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Author SHA1 Message Date
Ludovic Courtès ba40ce5b2c
gnu: flann: Update to 1.9.1. 
* gnu/packages/maths.scm (flann): Update to 1.9.1.
[source]: Use 'git-fetch'.
[home-page]: Change to github.com.
 2020-05-10 16:08:37 +02:00
Ludovic Courtès f8bb53caad
gnu: flann: Remove "octave" output. 
Octave support currently fails to build and is not used by any other
package in Guix.

* gnu/packages/maths.scm (flann)[outputs]: Remove "octave" output.
[inputs]: Remove OCTAVE-CLI.
[arguments]: Remove 'set-octave-directory' phase.
 2020-05-10 16:08:37 +02:00
Marius Bakke 8bf8cd9b85
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/backup.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/guile.scm
	gnu/packages/lisp.scm
	gnu/packages/openldap.scm
	gnu/packages/package-management.scm
	gnu/packages/web.scm
	gnu/packages/xorg.scm
 2020-04-30 23:47:49 +02:00
Ricardo Wurmus 0b2c883828
gnu: Add hdf5-blosc. 
* gnu/packages/maths.scm (hdf5-blosc): New variable.
 2020-04-28 12:23:28 +02:00
Marius Bakke 030f6f489f
Merge branch 'master' into core-updates 
Conflicts:
	etc/news.scm
	gnu/local.mk
	gnu/packages/bootloaders.scm
	gnu/packages/linphone.scm
	gnu/packages/linux.scm
	gnu/packages/tls.scm
	gnu/system.scm
 2020-04-23 13:33:09 +02:00
Felix Gruber 6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7 
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-22 19:23:58 +02:00
R Veera Kumar 9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file. 
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-20 20:05:09 +02:00
Marius Bakke 109bf6a0e7
gnu: dune-localfunctions: Fix build failure. 
* gnu/packages/maths.scm (dune-localfunctions)[arguments]: Add phase
'hide-gfortran'.
 2020-04-14 22:33:01 +02:00
Marius Bakke f7cbf403ef
gnu: dune-istl: Fix build failure. 
* gnu/packages/maths.scm (dune-istl)[arguments]: Add phase 'hide-gfortran'.
 2020-04-14 22:33:01 +02:00
Marius Bakke fc58cb5bd2
Merge branch 'master' into core-updates 2020-04-13 20:26:21 +02:00
Vagrant Cascadian 48b0d9c071
gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks". 
* gnu/packages/maths (dune-subgrid): Fix grammar.
 2020-04-12 13:34:56 -07:00
Vagrant Cascadian 67e2e1718c
gnu: libqalculate: Fix spelling of "uncertainty". 
* gnu/packages/maths (libqalculate): Fix typo.
 2020-04-12 12:03:37 -07:00
Marius Bakke 2778302399
Merge branch 'master' into core-updates 
Conflicts:
	etc/news.scm
	gnu/local.mk
	gnu/packages/check.scm
	gnu/packages/cross-base.scm
	gnu/packages/gimp.scm
	gnu/packages/java.scm
	gnu/packages/mail.scm
	gnu/packages/sdl.scm
	gnu/packages/texinfo.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2020-04-08 13:00:50 +02:00
Nicolò Balzarotti b60e2d480a
gnu: Add dsfmt. 
* gnu/packages/maths.scm (dsfmt): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-07 17:31:55 +03:00
Marius Bakke a533c5a183
gnu: octave-cli: Fix build. 
* gnu/packages/maths.scm (octave-cli)[inputs]: Add LIBJPEG-TURBO.
[arguments]: Add "--enable-link-all-dependencies" in #:configure-flags.
 2020-04-05 22:45:15 +02:00
Vincent Legoll 525e83ec83
gnu: scotch: Make some inputs native. 
* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here...
[native-inputs]: ...to this new field.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-04 20:19:03 +02:00
Marius Bakke 0ad05c15e3
gnu: GSL: Remove unnecessary (%current-system) call. 
* gnu/packages/maths.scm (gsl)[arguments]: Use the let-bound SYSTEM variable
instead of %CURRENT-SYSTEM.
 2020-04-03 18:32:56 +02:00
R Veera Kumar 72c71d2497
gnu: Add qalculate-gtk. 
* gnu/packages/maths.scm (qalculate-gtk): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-03 16:26:38 +02:00
R Veera Kumar 70c98efaf6
gnu: Add libqalculate. 
* gnu/packages/maths.scm (libqalculate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-03 16:26:38 +02:00
Marius Bakke c745b6f62c
gnu: GSL: Disable failing tests on i686-linux and aarch64-linux. 
This follows up commit 7ad3c81240, which enabled
tests that were previously disabled on i686, and takes into account new tests
with similar issues.  While at it, selectively disable tests on aarch64
instead of disabling all tests.

* gnu/packages/maths.scm (gsl)[arguments]: On i686 and aarch64, add #:phases.
 2020-04-03 15:53:10 +02:00
Marius Bakke ae0badf5bb
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/admin.scm
	gnu/packages/commencement.scm
	gnu/packages/guile.scm
	gnu/packages/linux.scm
	gnu/packages/package-management.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/web.scm
 2020-03-30 12:17:33 +02:00
Jakub Kądziołka 8b87d095b3
gnu: z3: Fix build determinism. 
* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set
  PYTHONHASHSEED=0.
 2020-03-29 20:35:33 +02:00
Tobias Geerinckx-Rice 53b9df20c1
gnu: Remove more packages deprecated for over almost a year. 
* gnu/packages/games.scm (armagetron-advanced)
(cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts)
(the-battle-for-wesnoth, the-battle-for-wesnoth-server)
(project-starfighter, kiki-the-nano-bot, fish-fillets-ng)
(dungeon-crawl-stone-soup): Let's forget this ever happened.
* gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name)
(magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb)
(ert-runner, groovy-emacs-modes): Remove variable.
* gnu/packages/engineering.scm (emacs-emms-player-simple-mpv)
(emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise.
* gnu/packages/finance.scm (monero-core): Likewise.
* gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles)
(tales-of-maj-eyal, battle-tanks, the-legend-of-edgar)
(gnome-tweak-tool): Likewise.
* gnu/packages/gnuzilla.scm (conkeror): Likewise.
* gnu/packages/guile-xyz.scm (mcron2): Likewise.
* gnu/packages/image.scm (pngcrunch): Likewise.
* gnu/packages/linux.scm (eudev-with-hwdb): Likewise.
* gnu/packages/maths.scm (qtoctave): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Likewise.
* gnu/packages/php.scm (php-with-bcmath): Likewise.
* gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next):
Likewise.
* gnu/packages/video.scm (livestreamer): Likewise.
* gnu/packages/virtualization.scm (lookingglass): Likewise.
* gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
(newsboat)[description]: Remove historical footnote.
 2020-03-29 18:40:56 +02:00
Amin Bandali c2cf286c62
Update email address and Savannah handle for Amin Bandali. 
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
 2020-03-28 16:30:07 -04:00
Nicolas Goaziou 255fb17b25
gnu: armadillo: Fix typo in description. 
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
 2020-03-28 21:27:33 +01:00
Marius Bakke 18af687037
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/icu4c.scm
	gnu/packages/man.scm
	gnu/packages/python-xyz.scm
	guix/scripts/environment.scm
	guix/scripts/pack.scm
	guix/scripts/package.scm
	guix/scripts/pull.scm
	guix/store.scm
 2020-03-27 00:12:15 +01:00
Kei Kebreau 6607aad53c
gnu: wxmaxima: Update to 20.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
 2020-03-22 19:22:42 -04:00
Marius Bakke d19b14c834
Merge branch 'master' into core-updates 2020-03-21 22:16:02 +01:00
Tobias Geerinckx-Rice 2aaa09f17d
gnu: hdf-eos2: Use HTTPS home page. 
* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
 2020-03-21 03:09:51 +01:00
Marius Bakke c4d769d359
Merge branch 'master' into core-updates 2020-03-18 19:41:08 +01:00
Marius Bakke 961d2ee269
Merge branch 'master' into core-updates 2020-03-14 13:13:40 +01:00
Marius Bakke b471337dea
gnu: suitesparse: Build with cmake-minimal. 
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
 2020-03-14 11:55:33 +01:00
Tobias Geerinckx-Rice d3be522036
gnu: openlibm: Use HTTPS home page. 
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
 2020-03-14 22:01:40 +01:00
Felix Gruber 6ceb771657
gnu: define dune-*-openmpi packages 
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber 393dc1cc0b
gnu: dune-*: remove openmpi dependency 
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
  [arguments]: remove code to setup openmpi for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber 0a703c0486
gnu: dune-istl: Build with suitesparse 
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber f1f9466e33
gnu: Add dune-subgrid 
* gnu/packages/maths.scm (dune-subgrid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber 07ebb75d17
gnu: Add dune-uggrid. 
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber a669f6e27b
gnu: dune-*: set up MPI for tests 
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Marius Bakke 50b99c90c8
Merge branch 'master' into core-updates 2020-03-10 20:50:02 +01:00
Tobias Geerinckx-Rice 80fafdba1c
gnu: speedcrunch: Use HTTPS home page. 
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Kei Kebreau 1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
 2020-03-06 15:04:34 -05:00
Marius Bakke df5a2e4f83
gnu: OpenBLAS: Update to 0.3.9. 
* gnu/packages/maths.scm (openblas): Update to 0.3.9.
 2020-03-05 23:36:05 +01:00
Felix Gruber aac148a87b
gnu: SuiteSparse: Update to 5.7.1. 
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-04 18:08:13 -05:00
Marius Bakke ebb7cf9e21
Merge branch 'master' into core-updates 2020-03-04 23:16:17 +01:00
Jakub Kądziołka f6b4d395fd
gnu: z3: Build the Python bindings 
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and
  --pypkgdir flags to configure. To facilitate the latter, add
  (guix build python-build-system) to #:modules and #:imported-modules.
 2020-02-23 17:58:38 +01:00
Andreas Enge b457f3cc16
gnu: Add vinci. 
* gnu/packages/maths.scm (vinci): New variable.
 2020-02-21 13:30:25 +01:00
Marius Bakke 087c94019d
gnu: OpenBLAS: Update to 0.3.8. 
* gnu/packages/maths.scm (openblas): Update to 0.3.8.
 2020-02-15 22:02:56 +01:00
Marius Bakke 7edafc884c
Merge branch 'master' into core-updates 2020-02-14 19:05:45 +01:00
Kei Kebreau 8a0dd289c5
gnu: octave, octave-cli: Update to 5.2.0. 
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
 2020-02-10 14:43:06 -05:00
Marius Bakke 52665d2b6b
Merge branch 'staging' into core-updates 2020-02-03 15:45:44 +01:00
Eric Bavier aa2e83cce2
gnu: superlu-dist: Update to 6.2.0. 
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url.  Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-01-31 09:17:16 -06:00
Eric Bavier 48fe5c36a2
gnu: superlu: Update upstream url. 
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
 2020-01-31 09:13:57 -06:00
Marius Bakke 12d8adbfc0
Merge branch 'staging' into core-updates 2020-01-23 23:11:11 +01:00
Kei Kebreau 48446f0f94
gnu: wxmaxima: Update to 20.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3.
[home-page]: Update URL.
 2020-01-23 14:22:41 -05:00
Marius Bakke 4bd428a7ce
gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'. 
* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to
LIBJPEG-TURBO.
* gnu/packages/admin.scm (testdisk)[inputs]: Likewise.
* gnu/packages/algebra.scm (giac)[inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[inputs]: Likewise.
* gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise.
* gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise.
* gnu/packages/display-managers.scm (slim)[inputs]: Likewise.
* gnu/packages/ebook.scm (fbreader)[inputs]: Likewise.
* gnu/packages/emacs.scm (emacs)[inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise.
* gnu/packages/freedesktop.scm (weston)[inputs]: Likewise.
* gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame,
eureka, ioquake3)[inputs]: Likewise.
* gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest,
fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise.
* gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise.
* gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise.
(ghostscript)[inputs, native-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise.
* gnu/packages/graphics.scm (blender, blender-2.79, openimageio,
openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise.
* gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise.
* gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise.
* gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl,
insight-toolkit)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage,
vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise.
* gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise.
* gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11,
openjdk12)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise.
* gnu/packages/mate.scm (atril, eom)[inputs]: Likewise.
* gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise.
* gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise.
* gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise.
* gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin,
rawtherapee)[inputs]: Likewise.
* gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise.
* gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise.
* gnu/packages/scheme.scm (racket)[inputs]: Likewise.
* gnu/packages/scribus.scm (scribus)[inputs]: Likewise.
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise.
(guile-sdl)[native-inputs]: Likewise.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise.
* gnu/packages/upnp.scm (readymedia)[inputs]: Likewise.
* gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise.
* gnu/packages/web.scm (netsurf)[inputs]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise.
* gnu/packages/wine.scm (wine)[inputs]: Likewise.
* gnu/packages/wv.scm (wv)[inputs]: Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise.
* gnu/packages/xfce.scm (tumbler)[inputs]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise.
* gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
 2020-01-22 22:12:34 +01:00
Marius Bakke 8ed9be3fac
Merge branch 'staging' into core-updates 2020-01-21 22:39:42 +01:00
Tobias Geerinckx-Rice 1e05e837c7
gnu: elemental: Update home page. 
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home
page.
 2020-01-19 17:57:09 +01:00
Tobias Geerinckx-Rice 2299d83e2f
gnu: petsc: Use HTTPS home page. 
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
 2020-01-19 06:09:02 +01:00
Tobias Geerinckx-Rice 0a44f9c4e4
gnu: Use HTTPS for www.hdfgroup.org. 
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS.
(hdf-java, h5check)[source]: Likewise.
 2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice 821aa687b4
gnu: netcdf: Use HTTPS home page. 
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
 2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice d5730000e2
gnu: scotch: Use HTTPS home page. 
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
 2020-01-17 23:32:34 +01:00
Amin Bandali a3143063ae
Update email address for Amin Bandali. 
* .mailmap: Add name and email addresses for Amin Bandali.
* gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm:
Update email address for Amin Bandali.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-01-17 18:30:33 +01:00
Marius Bakke 3cfe76bec0
Merge branch 'master' into core-updates 2020-01-15 00:09:46 +01:00
Paul Garlick 09bad3cd42
gnu: python-slepc4py: Update to 3.11.0. 
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
 2020-01-14 17:24:11 +00:00
Paul Garlick f1cc312e15
gnu: python-petsc4py: Update to 3.11.0. 
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
 2020-01-14 17:23:50 +00:00
Marius Bakke b7bf02a418
Merge branch 'master' into core-updates 2020-01-11 22:38:24 +01:00
Tobias Geerinckx-Rice cb169aae81
gnu: hdf5@1.10: Update to 1.10.6. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
 2020-01-10 23:47:28 +01:00
Konrad Hinsen e6de152dc1
gnu: lapack: Update to 3.9.0. 
* gnu/packages/maths.scm (lapack): Update to 3.9.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-07 12:25:09 +01:00
Mathieu Othacehe ce9383c090
Merge remote-tracking branch 'master' into core-updates. 2019-12-31 11:04:51 +01:00
Ludovic Courtès 94fea21b21
gnu: hdf5@1.10: Update to 1.10.5. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-12-13 18:04:04 +01:00
Efraim Flashner c9e676d0b1
Merge remote-tracking branch 'origin/master' into core-updates 2019-12-12 04:10:59 +02:00
Andreas Enge 0ffc2d537d
gnu: Add lrslib. 
* gnu/packages/maths.scm (lrslib): New variable.
 2019-12-06 22:56:02 +01:00
Marius Bakke 9d5aa00906
Merge branch 'master' into core-updates 2019-12-05 17:57:35 +01:00
Marius Bakke 33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Tobias Geerinckx-Rice dbef037ff4
gnu: z3: Update to 4.8.7. 
* gnu/packages/maths.scm (z3): Update to 4.8.7.
 2019-12-01 00:49:15 +01:00
Tobias Geerinckx-Rice 1ff64c503a
gnu: nauty: Update to 2.6r12. 
* gnu/packages/maths.scm (nauty): Update to 2.6r12.
 2019-12-01 00:49:14 +01:00
Marius Bakke 0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Ricardo Wurmus f3640e7395
gnu: Remove obsolete import of R build system module. 
* gnu/packages/maths.scm: Remove import of (guix build-system r).
 2019-11-27 18:29:32 +01:00
zimoun ef7944b94f
gnu: r-subplex: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun 682768deb0
gnu: r-pracma: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun 9bd56b1a77
gnu: r-desolve: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun 0eb59d9eac
gnu: r-quadprog: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
Efraim Flashner 7ad3c81240
gnu: gsl: Update to 2.6. 
* gnu/packages/maths.scm (gsl): Update to 2.6.
[source]: Remove patch.
* gnu/packages/patches/gsl-test-i686.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-11-26 22:26:20 +02:00
Kei Kebreau 1e8609f238
gnu: wxmaxima: Update to 19.11.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
 2019-11-23 15:33:14 -05:00
Tobias Geerinckx-Rice ec9a15c2eb
gnu: r-quadprog: Update to 1.5-8. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
 2019-11-23 02:00:40 +01:00
Tobias Geerinckx-Rice 3db9cbf676
gnu: r-desolve: Update to 1.25. 
* gnu/packages/maths.scm (r-desolve): Update to 1.25.
 2019-11-23 02:00:40 +01:00
Marius Bakke b60d2bfff9
Merge branch 'master' into staging 2019-11-21 22:44:15 +01:00
Robert Smith 3b7828cc7f
gnu: Add minisat. 
* gnu/packages/patches/minisat-friend-declaration.patch: New file.
* gnu/packages/patches/minisat-install.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add both files above.
* gnu/packages/maths.scm (minisat): New exported variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-11-19 17:27:58 +01:00
Marius Bakke 023522d3a1
Merge branch 'master' into staging 2019-10-21 00:33:43 +02:00
Marius Bakke 9d731fb61d
gnu: vc: Update to 1.4.1. 
* gnu/packages/maths.scm (vc): Update to 1.4.1.
[native-inputs]: Add VIRTEST and a test data origin.
[arguments]: Add phase to copy test data.
 2019-10-20 00:31:15 +02:00
Marius Bakke b95d1b3289
Merge branch 'master' into staging 2019-10-18 18:10:47 +02:00
Maurice Brémond 06e1239502
gnu: mumps: Build and install shared libraries. 
* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support.  In 'install' phase, install libmpiseq.so when it
exists.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Maurice Brémond 5dbc79eb60
gnu: mumps: Update to 5.2.1. 
* gnu/packages/maths.scm (mumps): Update to 5.2.1.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Marius Bakke 378ebc048c
Merge branch 'master' into staging 2019-10-13 23:04:06 +02:00
Jan Nieuwenhuizen 185152e39e
gnu: mcrl2: Update source url. 
* gnu/packages/maths.scm (mcrl2): Update source url.
 2019-10-08 23:25:51 +02:00
Marius Bakke 2ea095300a
gnu: OpenBLAS: Update to 0.3.7. 
* gnu/packages/maths.scm (openblas): Update to 0.3.7.
 2019-10-08 21:23:06 +02:00
Marius Bakke a4384dc970
gnu: OpenBLAS: Incorporate grafted changes. 
* gnu/packages/maths.scm (openblas)[replacement]: Remove.
[arguments]: Add NUM_THREADS in #:make-flags.
(openblas/fixed-num-threads): Remove variable.
 2019-10-08 21:23:06 +02:00
Ludovic Courtès cf3d1763ed
Merge branch 'core-updates' 2019-10-08 11:37:07 +02:00