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29760 Commits (79dc47c9c937ecf08680dace26cca029d7de4a2e)

Author SHA1 Message Date
Ricardo Wurmus 37200dbcc3
gnu: r-rhdf5lib: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0.
[source]: Add snippet to remove bundled binaries.
[arguments]: Replace references to hdf5 with references to hdf5-1.10.
[native-inputs]: Likewise.
[propagated-inputs]: Replace hdf5 with hdf5-1.10.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 8e48d36f26
gnu: r-hdf5array: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 611a255d2b
gnu: r-rhdf5: Update to 2.26.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus a1c2bf8e54
gnu: r-rcas: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.8.0.
[native-inputs]: Remove r-testthat and ghc-pandoc-citeproc.
[propagated-inputs]: Add r-annotationdbi, r-genomeinfodb, and r-genomicranges;
remove r-bsgenome-mmusculus-ucsc-mm9, r-bsgenome-celegans-ucsc-ce10,
r-bsgenome-dmelanogaster-ucsc-dm3, r-org-ce-eg-db, r-org-dm-eg-db, and
r-org-mm-eg-db.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 900ce2bafd
gnu: r-delayedmatrixstats: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.4.0.
[propagated-inputs]: Add r-biocparallel and r-hdf5array.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 70a3a76ba7
gnu: r-scran: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.1.
[propagated-inputs]: Add r-biocneighbors; remove r-dt, r-fnn, r-ggplot2,
r-shiny, and r-viridis.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 48f2791496
gnu: r-scater: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
[propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and r-tximport.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus f93ec63ccf
gnu: r-singlecellexperiment: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 3c833608f3
gnu: r-beachmat: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.4.0.
[propagated-inputs]: Add r-biocgenerics.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus edb91244c3
gnu: r-qvalue: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus d055f199a9
gnu: r-hitc: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.26.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 8023912934
gnu: r-fithic: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.8.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 7468a76480
gnu: r-sushi: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.20.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 85b16c05e8
gnu: r-gwascat: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.14.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus d57445c9b2
gnu: r-gviz: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus ea55326dc7
gnu: r-gqtlstats: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus da679b5202
gnu: r-ldblock: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.12.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus 4b91335566
gnu: r-erma: Update to 0.14.0.
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.14.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 220ac15e3f
gnu: r-snpstats: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.32.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 181a843143
gnu: r-gqtlbase: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.14.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus f20c766413
gnu: r-ggbio: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.30.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus e7a0bc1ccf
gnu: r-biovizbase: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus cdab2dcfea
gnu: r-organismdbi: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.24.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus e8e78c4966
gnu: r-ensembldb: Update to 2.6.0.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 0c96e4b290
gnu: r-dirichletmultinomial: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 5ae5a8ebfc
gnu: r-complexheatmap: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.20.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus d78c6aca55
gnu: r-genomicfiles: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.18.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 122e099e72
gnu: r-gage: Update to 2.32.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 4984212786
gnu: r-keggrest: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.22.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 95df764c01
gnu: r-fastseg: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.28.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 147633d4c1
gnu: r-annotationhub: Update to 2.14.1.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.1.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus d7ea34bf99
gnu: r-interactivedisplaybase: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.20.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus b03951f26b
gnu: r-edaseq: Update to 2.16.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 7812e6b82e
gnu: r-deseq: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 800954eba4
gnu: r-aroma-light: Update to 3.12.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.12.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus 675d91a035
gnu: r-msnid: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 762aca7270
gnu: r-msnbase: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 73d7475246
gnu: r-pcamethods: Update to 1.74.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.74.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2c4311dc7c
gnu: r-mzid: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 0e16fc4699
gnu: r-vsn: Update to 3.50.0.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.50.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2b085484c0
gnu: r-affy: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.60.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 511abd7add
gnu: r-affyio: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.52.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 691ce09fd3
gnu: r-protgenerics: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 8af8688339
gnu: r-sva: Update to 3.30.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 18604a76e4
gnu: r-methylkit: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 739a856db8
gnu: r-copywriter: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2e9d8116fb
gnu: r-chipseq: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.32.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus cec8f0920b
gnu: r-annotationfilter: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.6.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus d2b60be596
gnu: r-tximport: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus ad90921ddc
gnu: r-mutationalpatterns: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.8.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 338f860cc6
gnu: r-bamsignals: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 48196899cd
gnu: r-rhtslib: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 7d7c702c03
gnu: r-zlibbioc: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.28.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2919fefe12
gnu: r-motifrg: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.26.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 34f1c60c78
gnu: r-seqlogo: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.48.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus c5b0815c44
gnu: r-genomation: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.14.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 45ba2caedb
gnu: r-seqpattern: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.14.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus d11bc259a8
gnu: r-impute: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.56.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 78ecdbc00a
gnu: r-bsgenome: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.50.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 44fa14dfa3
gnu: r-topgo: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.34.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 8a0d57d26e
gnu: r-genomicfeatures: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.1.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus c5f1d1ce80
gnu: r-rtracklayer: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 52b95337e8
gnu: r-genomicalignments: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 9fd4350e5a
gnu: r-summarizedexperiment: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.12.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus de4c38f80b
gnu: r-delayedarray: Update to 0.8.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.8.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 7f3778eb06
gnu: r-rsamtools: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 4804c59227
gnu: r-biostrings: Update to 2.50.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus cd8828918f
gnu: r-biocparallel: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 3359d44210
gnu: r-biomart: Update to 2.38.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.38.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 3986e0dee5
gnu: r-annotationdbi: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.44.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 5b82e12a99
gnu: r-biobase: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.42.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus 8d3906a95f
gnu: r-genomicranges: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.34.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus fb10fb72ba
gnu: r-xvector: Update to 0.22.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.22.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 78d2ffdc73
gnu: r-limma: Update to 3.38.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.2.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus ca2945c316
gnu: r-variantannotation: Update to 1.28.1.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.1.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 08cd2d5b59
gnu: r-edger: Update to 3.24.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 12871693fe
gnu: r-genomeinfodb: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 9a8dd51979
gnu: r-iranges: Update to 2.16.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.16.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus a037453554
gnu: r-s4vectors: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 70f2758f71
gnu: r-dnacopy: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.56.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus a127d3522a
gnu: r-bioccheck: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.18.0.
[propagated-inputs]: Add r-knitr and r-biocmanager; remove r-biocinstaller.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 6087f5ce37
gnu: r-biocstyle: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.10.0.
[propagated-inputs]: Add biocmanager.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus c8dbb5fa7f
gnu: r-biocviews: Update to 1.50.1.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.1.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 36d7d823a4
gnu: r-biocinstaller: Update to 1.32.1.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.32.1.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 2f28ffd81d
gnu: r-biocgenerics: Update to 0.28.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.28.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 5c996cab4c
gnu: r-grohmm: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.16.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus bf25930cf6
gnu: r-systempiper: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 9adf78c21e
gnu: r-shortread: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.40.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 4a4b5b8537
gnu: r-gostats: Update to 2.48.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.48.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus 95ae5acc89
gnu: r-category: Update to 2.48.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 6dfb0b25ae
gnu: r-gseabase: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.44.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 19a6149190
gnu: r-rbgl: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 2ff6604a53
gnu: r-annotationforge: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.24.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 856444a0a1
gnu: r-dexseq: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus b5c552e654
gnu: r-deseq2: Update to 1.22.1.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.1.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 85fb33a051
gnu: r-genefilter: Update to 1.64.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.64.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus f4a95a0d15
gnu: r-geneplotter: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.60.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus dadd682c53
gnu: r-copynumber: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.22.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 090d4c0159
gnu: r-annotate: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.60.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 00281ea3cd
gnu: r-modelmetrics: Update to 1.2.2.
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.2.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 9bd78484a2
gnu: r-preprocesscore: Update to 1.44.0.
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.44.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 1b3552310d
gnu: r-tidyr: Update to 0.8.2.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.2.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 466397c35b
gnu: r-dt: Update to 0.5.
* gnu/packages/statistics.scm (r-dt): Update to 0.5.
[propagated-inputs]: Add r-promises.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 9094eb892c
gnu: r-roxygen2: Update to 6.1.1.
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.1.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 0de3ebb099
gnu: r-survival: Update to 2.43-1.
* gnu/packages/statistics.scm (r-survival): Update to 2.43-1.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 83ca17d8e8
gnu: r-matrix: Update to 1.2-15.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-15.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 1966d8ffc7
gnu: r-lattice: Update to 0.20-38.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-38.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus 600a25eb04
gnu: r-mass: Update to 7.3-51.1.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.1.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus a44f8b00fe
gnu: r-pander: Update to 0.6.3.
* gnu/packages/cran.scm (r-pander): Update to 0.6.3.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 7466c3bb06
gnu: r-rcmdcheck: Update to 1.3.1.
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1.
[propagated-inputs]: Add r-sessioninfo.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus fc532b452f
gnu: r-remotes: Update to 2.0.2.
* gnu/packages/cran.scm (r-remotes): Update to 2.0.2.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 3d6fa1a3ad
gnu: r-sessioninfo: Update to 1.1.1.
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 244a5c43ec
gnu: r-flextable: Update to 0.4.6.
* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 84d0d860e1
gnu: r-sjmisc: Update to 2.7.6.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6.
[propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus cea8a60747
gnu: r-xts: Update to 0.11-2.
* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 5d986a3b41
gnu: r-psych: Update to 1.8.10.
* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 56af171ffd
gnu: r-ipred: Update to 0.9-8.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus ec0ee08576
gnu: r-ffbase: Update to 0.12.7.
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 65dd0e6748
gnu: r-pkgload: Update to 1.0.2.
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 0dd84df121
gnu: r-ps: Update to 1.2.1.
* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 269182b0f1
gnu: r-rgraphviz: Update to 2.26.0.
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus bb47aca5e7
gnu: Add hdf5-1.10.
* gnu/packages/maths.scm (hdf5-1.10): New variable.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus d639d8884c
gnu: r-regioner: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 286157dc49
gnu: Add r-biocneighbors.
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus 318bcbc451
gnu: r-dnabarcodes: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6f1e1d0f88
gnu: r-inspect: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus c348cfed74
gnu: r-rots: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 016afac30f
gnu: r-glimma: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6ea9ae9c39
gnu: r-goseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus b858338c76
gnu: r-ctc: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus bbc4787cf2
gnu: r-interactionset: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus c4fed658a9
gnu: r-riboseqr: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus e22e462b33
gnu: r-riboprofiling: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus e9427b2c78
gnu: r-ripseeker: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus aa802eafb6
gnu: r-chipcomp: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 4728e27511
gnu: r-bayseq: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 14520b640e
gnu: r-graph: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 95ee4a466b
gnu: r-multtest: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus a92f523026
gnu: r-qdnaseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 9add0933d0
gnu: r-cghcall: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 46cdceef4c
gnu: r-cghbase: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus f1c606ce8c
gnu: r-marray: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus 98652568a4
gnu: r-diffbind: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus 6168692159
gnu: r-hpar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus 1e605c030f
gnu: Add r-biocmanager.
* gnu/packages/cran.scm (r-biocmanager): New variable.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus b58940cb03
gnu: Add r-ncdf4.
* gnu/packages/cran.scm (r-ncdf4): New variable.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus bfa5662e38
gnu: Add r-rcppannoy.
* gnu/packages/cran.scm (r-rcppannoy): New variable.
2018-11-07 12:26:31 +01:00
Mathieu Othacehe 8243f4e55a
gnu: slang: Use a correct location for terminfo dirs.
As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.

* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
2018-11-07 18:39:19 +09:00
Mathieu Othacehe a7903ca150
gnu: terminals: Change libtsm and kmscon repositories.
Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.

* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and
switch to git-fetch method.
2018-11-07 18:27:01 +09:00
Mathieu Othacehe 581720bc74
gnu: Add guile-newt.
* gnu/packages/guile.scm (guile-newt): New variable.
2018-11-07 18:09:30 +09:00
Efraim Flashner cbb5d2e145
gnu: kodi: Fix typo.
This is a follow-up to 2c17bd7b29.

* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
2018-11-07 10:38:13 +02:00
Leo Famulari 02e2133bd2
gnu: LibreOffice: Update to 6.1.3.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
2018-11-06 23:13:50 -05:00
Leo Famulari b20aef98a0
gnu: GnuPG: Update to 2.2.11.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
2018-11-06 17:26:45 -05:00
Marius Bakke c6b05bacc0
gnu: nginx: Update to 1.14.1 [security fixes].
This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845.

* gnu/packages/web.scm (nginx): Update to 1.14.1.
2018-11-06 21:34:30 +01:00
Leo Famulari f25614229b
gnu: Syncthing: Update to 0.14.52.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
2018-11-06 11:16:22 -05:00
Ludovic Courtès 4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms.
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06 17:08:46 +01:00
Stefan Stefanović 158c02dffa
gnu: Add xcb-util-errors.
* gnu/packages/xorg.scm (xcb-util-errors): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-06 17:00:02 +01:00
Ludovic Courtès 3527f600b5
gnu: guile-sqlite3: Update home page.
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
2018-11-06 17:00:01 +01:00
lakshmi cddc0300b7
gnu: Add r-weights.
* gnu/packages/cran.scm (r-weights): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-11-06 16:06:42 +01:00
Tobias Geerinckx-Rice fe4fb278b8
gnu: youtube-dl: Update to 2018.11.03.
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
2018-11-06 15:34:37 +01:00
Tobias Geerinckx-Rice b1eeeb8dd4
gnu: terraform-docs: Update to 0.5.0.
* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0.
[native-inputs]: Remove them all.
2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice c3b8300af3
gnu: jq: Don't use NAME in source URI.
* gnu/packages/web.scm (jq)[source]: Code more hard.
2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice 418dd6adb5
gnu: jq: Update to 1.6.
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-06 15:34:36 +01:00
Rutger Helling c58f3ebaf8
gnu: ffmpeg: Update to 4.1.
* gnu/packages/video.scm (ffmpeg): Update to 4.1.
2018-11-06 12:02:59 +01:00
Efraim Flashner 730e5fbc66
Revert "gnu: c-ares: Update to 1.15.0."
c-ares has more than 3000 dependant packages.

This reverts commit b588adc96f.
2018-11-06 12:22:02 +02:00
Efraim Flashner b588adc96f
gnu: c-ares: Update to 1.15.0.
* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
2018-11-06 08:32:56 +02:00
Marius Bakke adde15186d
gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c.
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
2018-11-05 23:53:30 +01:00
Marius Bakke 208e82297c
gnu: xapian: Update to 1.4.9.
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
2018-11-05 23:46:38 +01:00
Marius Bakke d79c8148cc
gnu: libssh: Update to 0.7.7.
* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
2018-11-05 23:46:38 +01:00
Marius Bakke b5a887637c
gnu: strace: Update to 4.25.
* gnu/packages/linux.scm (strace): Update to 4.25.
2018-11-05 23:46:38 +01:00
Marius Bakke 876428dd98
gnu: libmtp: Update to 1.1.16.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
2018-11-05 23:46:38 +01:00
Marius Bakke 039241bc96
gnu: libgit2: Update to 0.26.8.
* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
2018-11-05 23:46:38 +01:00
Marius Bakke c98a7e6b91
gnu: i3-wm: Update to 4.16.
* gnu/packages/wm.scm (i3-wm): Update to 4.16.
2018-11-05 23:46:38 +01:00
Marius Bakke 9c415f96ec
gnu: libgphoto2: Update to 2.5.20.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
2018-11-05 23:46:38 +01:00
Marius Bakke 66044a3698
gnu: glm: Update to 0.9.9.3.
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
2018-11-05 23:46:38 +01:00
Marius Bakke 64b60f38e7
gnu: ffmpeg: Update to 4.0.3.
* gnu/packages/video.scm (ffmpeg): Update to 4.0.3.
2018-11-05 23:46:38 +01:00
Marius Bakke c5e5711002
gnu: ffmpeg@3.4: Update to 3.4.5.
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5.
2018-11-05 23:46:37 +01:00
Marius Bakke 196653145a
gnu: feh: Update to 2.28.1.
* gnu/packages/image-viewers.scm (feh): Update to 2.28.1.
2018-11-05 23:46:37 +01:00
Marius Bakke 00815eea38
gnu: libsoup: Update to 2.64.2.
* gnu/packages/gnome.scm (libsoup): Update to 2.64.2.
2018-11-05 23:46:37 +01:00
Marius Bakke 0a56ffdf1f
gnu: mono: Update home page.
* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS.
2018-11-05 23:46:37 +01:00
Leo Famulari 288d24800d
gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}].
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6.
2018-11-05 16:22:11 -05:00
Pierre Neidhardt 426ffb830a
gnu: emacs-mu4e-conversation: Update to 20181105.
* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181105.
2018-11-05 20:22:06 +01:00
Pierre Neidhardt 695db2f98a
gnu: Add emacs-helm-slime.
* gnu/packages/emacs.scm (emacs-helm-slime): New variable.
2018-11-05 13:58:33 +01:00
Mark H Weaver c9f3d38be4
gnu: linux-libre: Update to 4.19.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.1.
(%linux-libre-hash): Update hash.
2018-11-05 04:00:45 -05:00
Mark H Weaver 28c717213d
gnu: linux-libre@4.14: Update to 4.14.79.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.79.
(%linux-libre-4.14-hash): Update hash.
2018-11-05 04:00:43 -05:00
Eric Bavier cddc044ce7
libreoffice: honor '--cores=...' during build.
* gnu/packages/libreoffice.scm (libreoffice)[configure-flags]: Add
'--with-parallelism' flag.
2018-11-04 21:56:39 -06:00
Danny Milosavljevic 64eb038eef
gnu: Add fswatch.
* gnu/packages/monitoring.scm (fswatch): New variable.
2018-11-05 03:01:21 +01:00
Luther Thompson 1417f50317
gnu: python-ilinkedlist: Update to 0.2.0.
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-05 00:08:47 +01:00
Vagrant Cascadian b6e9514864
gnu: pelican: Update to 3.7.1.
* gnu/packages/python.scm (pelican): Update to 3.7.1.
  [home-page]: Use HTTPS URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-05 00:08:47 +01:00
Pkill -9 c834bd3bb2
gnu: xonotic: Add icon and category to desktop files.
* gnu/packages/games.scm (xonotic): Add icon ("xonotic") and category
("Game") to the .desktop files for Xonotic.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-05 00:08:47 +01:00
Pierre Neidhardt 97b7b96efc
gnu: go-github-com-urfave-cli: Remove duplicate declaration.
* gnu/packages/golang.scm (go-github-com-urfave-cli): Remove duplicate declaration.
2018-11-04 23:33:24 +01:00
Efraim Flashner 30012b7408
gnu: myrepos: Wrap the webcheckout binary.
* gnu/packages/version-control.scm (myrepos)[arguments]: Add a custom
'wrap-webcheckout phase to wrap webcheckout with its perl libraries.
[inputs]: Add perl-encode-locale, perl-html-parser, perl-http-date,
perl-http-message, perl-libwww, perl-try-tiny, perl-uri.
2018-11-04 12:45:27 +02:00
Efraim Flashner f909e21797
gnu: debian-archive-keyring: Update to 2018.1.
* gnu/packages/debian.scm (debian-archive-keyring): Update to 2018.1.
[source]: Download from git repository.
2018-11-04 12:00:13 +02:00
Efraim Flashner 2e77bbed71
gnu: ruby@2.3: Update to 2.3.8.
* gnu/packages/ruby.scm (ruby@2.3): Update to 2.3.8.
2018-11-04 12:00:13 +02:00
Efraim Flashner d4b5e4bb73
gnu: debootstrap: Update to 1.0.109.
* gnu/packages/debian.scm (debootstrap): Update to 1.0.109.
2018-11-04 12:00:10 +02:00
Arun Isaac 3e84ce51fb
gnu: mpop: Update to 1.4.0.
* gnu/packages/mail.scm (mpop): Update to 1.4.0.
2018-11-04 10:36:17 +05:30
Efraim Flashner e9f305a1c8
gnu: sbcl-lift: Don't keep the bundled website.
* gnu/packages/lisp.scm (sbcl-lift)[source]: Remove bundled website.
[arguments]: Remove custom 'make-gzips-writable phase.
2018-11-03 20:43:35 +02:00
Ludovic Courtès 0e091b3e93
gnu: totem: Update to 3.26.2.
* gnu/packages/gnome.scm (totem): Update to 3.26.2.
2018-11-03 15:44:40 +01:00
Ludovic Courtès 504f0cf198
gnu: emacs-debbugs: Update to 0.16.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.16.
2018-11-03 15:44:24 +01:00
Ludovic Courtès a7c8574f39
gnu: perl-image-exiftool: Update to 11.11.
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.11.
2018-11-03 15:16:42 +01:00
Ludovic Courtès 46c8f53ba8
gnu: emacs-dired-du: Update to 0.5.1.
* gnu/packages/emacs.scm (emacs-dired-du): Update to 0.5.1.
2018-11-03 15:16:20 +01:00
Ludovic Courtès 8e5c59868c
gnu: diffoscope: Update to 104.
* gnu/packages/package-management.scm (diffoscope): Update to 104.
2018-11-03 15:16:02 +01:00
Arun Isaac b1c7f5fff9
gnu: emacs-emms: Update to 5.1.
* gnu/packages/emacs.scm (emacs-emms): Update to 5.1.
2018-11-03 19:14:05 +05:30
Tobias Geerinckx-Rice 3995e85462
gnu: tor: Update to 0.3.4.9.
* gnu/packages/tor.scm (tor): Update to 0.3.4.9.
2018-11-02 19:51:12 +01:00
Julien Lepiller ff349415b2
gnu: python-apache-libcloud: Update to 2.3.0.
* gnu/packages/python.scm (python-apache-libcloud)
(python2-apache-libcloud): Update to 2.3.0.
2018-11-02 14:32:24 +01:00
Danny Milosavljevic 722aac1ea1
Merge remote-tracking branch 'origin/wip-rust' into master. 2018-11-02 11:01:45 +01:00
Leo Famulari b3325eb306
gnu: Go 1.11: Avoid unnecessary store references.
This shrinks the closure of Go 1.11 from 1379 MiB to 581 MiB.

Fixes <https://bugs.gnu.org/32949>.

* gnu/packages/golang.scm (go-1.11)[arguments]: Add a 'delete-extraneous-files'
phase.
2018-11-01 23:23:09 -04:00
Leo Famulari 7571ec3576
gnu: MPD: Update to 0.20.23.
* gnu/packages/mpd.scm (mpd): Update to 0.20.23.
2018-11-01 15:30:05 -04:00
Leo Famulari 33279c2a19
gnu: mpd-mpc: Update to 0.31.
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.31.
[native-inputs]: Add python-sphinx.
2018-11-01 15:30:05 -04:00
Leo Famulari 361dd8a556
gnu: icecast: Update to 2.4.4 [fixes CVE-2018-18820].
* gnu/packages/xiph.scm (icecast): Update to 2.4.4.
2018-11-01 12:33:14 -04:00
Rutger Helling d7ca1899aa
gnu: mame: Update to 0.203.
* gnu/packages/emulators.scm (mame): Update to 0.203.
2018-11-01 09:24:52 +01:00
Rutger Helling a769a4d432
gnu: xpra: Update to 2.4.1.
* gnu/packages/xorg.scm (xpra): Update to 2.4.1.
2018-11-01 08:32:45 +01:00
Rutger Helling e7039f10ec
gnu: dolphin-emu: Use ffmpeg instead of ffmpeg@3.4.
* gnu/packages/emulators.scm (dolphin-emu): Use ffmpeg instead of ffmpeg@3.4.
2018-11-01 08:20:13 +01:00
Rutger Helling ee3dd7a83a
gnu: sdl2: Update to 2.0.9.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.9.
2018-11-01 08:20:13 +01:00
Tobias Geerinckx-Rice 66a2a47117
gnu: whois: Update to 5.4.0.
* gnu/packages/networking.scm (whois): Update to 5.4.0.
2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice 38fda1cc36
gnu: highlight: Update to 3.47.
* gnu/packages/pretty-print.scm (highlight): Update to 3.47.
2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice a72d337fbc
gnu: python-jsonrpclib-pelix: Update to 0.3.2.
* gnu/packages/python.scm (python-jsonrpclib-pelix): Update to 0.3.2.
[arguments]: Disable #:tests?.
2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice 60ed87871d
gnu: python-pynacl: Update to 1.3.0.
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.3.0.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 351a12b0a7
gnu: oniguruma: Update to 6.9.0.
* gnu/packages/textutils.scm (oniguruma): Update to 6.9.0.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 33bddd309c
gnu: motion: Install translations.
* gnu/packages/video.scm (motion)[native-inputs]: Add gettext-minimal.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 2ea678fabf
gnu: motion: Don't use unstable tarball.
* gnu/packages/video.scm (motion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 4fbcfc1482
Keep (gnu packages video) module imports in order.
* gnu/packages/video.scm (define-module): Re-order module imports
alphabetically.
2018-11-01 04:33:54 +01:00
Tobias Geerinckx-Rice c3069cd183
gnu: motion: Update to 4.2.
* gnu/packages/video.scm (motion): Update to 4.2.
2018-11-01 04:32:35 +01:00
Tobias Geerinckx-Rice 2930a39b16
gnu: julia: Update objconv input to 2018-10-07.
* gnu/packages/julia.scm (julia)[input]: Update objconf to 2018-10-07.
2018-11-01 04:32:35 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726.
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-31 21:57:02 +02:00
Leo Famulari c438e0cc74
gnu: curl: Update grafted replacement to 7.62.0 [security fixes].
Fixes CVE-2018-{16839,16840,16842}.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.62.0.
(curl-7.61.1): Replace with ...
(curl-7.62.0): ... new variable.
2018-10-31 13:54:20 -04:00
Rutger Helling 124e9d6e0a
gnu: dolphin-emu: Update to commit 22ddd11.
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 22ddd11.
[arguments]: Return #t with phase 'fixgcc7.
2018-10-31 10:40:04 +01:00
Rutger Helling 3126bee69a
gnu: wine-staging: Update to 3.19.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.19.
* gnu/packages/wine.scm (wine-staging): Update to 3.19.
2018-10-31 09:39:55 +01:00
Mark H Weaver a45a92ccd8
gnu: webkitgtk@2.22: Update to 2.22.3.
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.3.
2018-10-31 01:47:52 -04:00
Arun Isaac c7ac8e36e2
gnu: quaternion: Update to 0.0.9.3.
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.3.
[inputs]: Add qtquickcontrols, qtsvg and qttools.
[arguments]: Remove fix-libqmatrixclient-dynamic-linking phase. Add
wrap-program phase.
2018-10-31 09:31:59 +05:30
Arun Isaac c6588749a6
gnu: libqmatrixclient: Update to 0.4.0.
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.4.0.
2018-10-31 09:31:59 +05:30
Tobias Geerinckx-Rice b590951ff2
gnu: meandmyshadow: Update home page.
* gnu/packages/games.scm (meandmyshadow)[home-page]: Follow permanent
redirect.
2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 1d9a9d27ae
gnu: meandmyshadow: Update to 0.5.
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 4cae7e67f3
gnu: hyperrogue: Update to 10.4x.
* gnu/packages/games.scm (hyperrogue): Update to 10.4x.
2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice 21fc352bad
gnu: yosys: Don't use unstable tarball.
* gnu/packages/fpga.scm (yosys)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice becee7029f
gnu: disorderfs: Update to 0.5.5.
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.5.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 58cd3123ac
gnu: pulseview: Update to 0.4.1.
* gnu/packages/electronics.scm (pulseview): Update to 0.4.1.
[arguments]: Remove CMAKE_CXX_FLAGS from #:configure-flags. (Keep)
build(ing) the unit tests. Add a ‘remove-empty-doc-directory’ phase.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 61c58b7827
gnu: sigrok-cli: Update to 0.7.1.
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.1.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 295fc4152a
gnu: cloc: Update to 1.80.
* gnu/packages/code.scm (cloc): Update to 1.80.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 1204402a90
gnu: python-partd: Update to 0.3.9.
* gnu/packages/python.scm (python-partd): Update to 0.3.9.
2018-10-30 23:40:42 +01:00
Ricardo Wurmus fd649d1e68
gnu: Add r-r2glmm.
* gnu/packages/cran.scm (r-r2glmm): New variable.
2018-10-30 22:47:35 +01:00
Ricardo Wurmus 7c02dd6268
gnu: Add r-lmertest.
* gnu/packages/cran.scm (r-lmertest): New variable.
2018-10-30 22:47:26 +01:00
Ricardo Wurmus 49863fd695
gnu: Add r-afex.
* gnu/packages/cran.scm (r-afex): New variable.
2018-10-30 22:47:18 +01:00
Ricardo Wurmus 20ff6e3a34
gnu: Add r-mvabund.
* gnu/packages/cran.scm (r-mvabund): New variable.
2018-10-30 22:47:10 +01:00
Ricardo Wurmus 4fb35ebd8d
gnu: Add r-rcppgsl.
* gnu/packages/cran.scm (r-rcppgsl): New variable.
2018-10-30 22:47:00 +01:00
Ricardo Wurmus 373cef0a0c
gnu: Add r-tweedie.
* gnu/packages/cran.scm (r-tweedie): New variable.
2018-10-30 22:46:47 +01:00
Ricardo Wurmus 32499b26e6
gnu: Add r-clusteval.
* gnu/packages/cran.scm (r-clusteval): New variable.
2018-10-30 22:13:01 +01:00
Ricardo Wurmus 7a06cdfa8c
gnu: r-analytics: Update to 3.0.
* gnu/packages/cran.scm (r-analytics): Update to 3.0.
[propagated-inputs]: Add r-vim.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus e5f9e9fa79
gnu: r-radiant-data: Update to 0.9.7.
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7.
[propagated-inputs]: Add r-shinyfiles and r-summarytools.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 39528a5ee9
gnu: r-pracma: Update to 2.1.8.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 4633c8e6fc
gnu: r-shinydashboard: Update to 0.7.1.
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.1.
[propagated-inputs]: Add r-promises.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 65279cc8f3
gnu: Add r-shinyfiles.
* gnu/packages/web.scm (r-shinyfiles): New variable.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus a056e2251e
gnu: r-htmlwidgets: Update to 1.3.
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.3.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus f697ef4a0d
gnu: r-servr: Update to 0.11.
* gnu/packages/web.scm (r-servr): Update to 0.11.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 8871a51350
gnu: r-webshot: Update to 0.5.1.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.1.
[propagated-inputs]: Add r-callr; remove r-processx and r-withr.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus d42f741035
gnu: r-dendextend: Update to 1.9.0.
* gnu/packages/cran.scm (r-dendextend): Update to 1.9.0.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus 31c8d9fe00
gnu: r-emmeans: Update to 1.3.0.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.0.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus bec74196ea
gnu: r-abps: Update to 0.3.
* gnu/packages/cran.scm (r-abps): Update to 0.3.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus 464676a970
gnu: r-proc: Update to 1.13.0.
* gnu/packages/cran.scm (r-proc): Update to 1.13.0.
2018-10-30 21:48:03 +01:00
Ricardo Wurmus 71d995392b
gnu: r-rdpack: Update to 0.10-1.
* gnu/packages/cran.scm (r-rdpack): Update to 0.10-1.
2018-10-30 21:47:54 +01:00
Ricardo Wurmus 081af9fae7
gnu: r-hdf5r: Update to 1.0.1.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
2018-10-30 21:47:46 +01:00
Ricardo Wurmus 08645fcff5
gnu: r-fansi: Update to 0.4.0.
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
2018-10-30 21:47:37 +01:00
Ricardo Wurmus 7608984fe9
gnu: r-later: Update to 0.7.5.
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
2018-10-30 21:47:28 +01:00
Ricardo Wurmus 80234d3294
gnu: r-maptools: Update to 0.9-4.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
2018-10-30 21:47:20 +01:00
Ricardo Wurmus fda8dd58c2
gnu: r-shinyace: Update to 0.3.2.
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
2018-10-30 21:47:06 +01:00
Ricardo Wurmus 02c57c018a
gnu: r-np: Update to 0.60-9.
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
2018-10-30 21:46:57 +01:00
Ricardo Wurmus 44de41b572
gnu: r-expm: Update to 0.999-3.
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
2018-10-30 21:46:48 +01:00
Ricardo Wurmus 484e81f73a
gnu: r-cubature: Update to 1.4-1.
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
2018-10-30 21:46:36 +01:00
Ricardo Wurmus 905734fd7c
gnu: r-extradistr: Update to 1.8.10.
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
2018-10-30 21:46:26 +01:00
Ricardo Wurmus 534bf85b9d
gnu: r-ttr: Update to 0.23-4.
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
2018-10-30 21:46:17 +01:00
Ricardo Wurmus dda4ce560f
gnu: r-tinytex: Update to 0.9.
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
2018-10-30 21:46:10 +01:00
Ricardo Wurmus a8de3090d8
gnu: r-xfun: Update to 0.4.
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
2018-10-30 21:46:00 +01:00
Ricardo Wurmus 8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11.
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
2018-10-30 21:45:51 +01:00
Ricardo Wurmus bba80fadbe
gnu: r-magic: Update to 1.5-9.
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
2018-10-30 21:45:42 +01:00
Ricardo Wurmus 5621b8403b
gnu: r-sm: Update to 2.2-5.6.
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
2018-10-30 21:45:32 +01:00
Ricardo Wurmus 870faab4b7
gnu: r-xts: Update to 0.11-1.
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
2018-10-30 21:45:16 +01:00
Ricardo Wurmus 16a39c2d56
gnu: r-ggridges: Update to 0.5.1.
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
2018-10-30 21:45:07 +01:00
Ricardo Wurmus 9e82d6080e
gnu: r-cli: Update to 1.0.1.
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
2018-10-30 21:44:59 +01:00
Ricardo Wurmus 2b8126a4ec
gnu: r-reshape: Update to 0.8.8.
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
2018-10-30 21:44:48 +01:00
Ricardo Wurmus ecdfca05c8
gnu: r-ffbase: Update to 0.12.5.
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
2018-10-30 21:44:38 +01:00
Ricardo Wurmus 674c818560
gnu: r-rcpp: Update to 0.12.19.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
2018-10-30 21:44:28 +01:00
Ricardo Wurmus 0ab28e5450
gnu: r-pkgload: Update to 1.0.1.
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
2018-10-30 21:43:38 +01:00
Ricardo Wurmus 2657e666cb
gnu: r-pkgbuild: Update to 1.0.2.
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
2018-10-30 21:43:28 +01:00
Ricardo Wurmus 7e127ab128
gnu: r-ps: Update to 1.2.0.
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
2018-10-30 21:43:19 +01:00
Ricardo Wurmus b62e104b84
gnu: r-ape: Update to 5.2.
* gnu/packages/cran.scm (r-ape): Update to 5.2.
2018-10-30 21:43:10 +01:00
Ricardo Wurmus 1c9906c2dd
gnu: r-reprex: Update to 0.2.1.
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
2018-10-30 21:42:59 +01:00
Ricardo Wurmus 6b451c0801
gnu: r-gprofiler: Update to 0.6.7.
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
2018-10-30 21:42:48 +01:00
Ricardo Wurmus 4fc6609a0c
gnu: r-keggrest: Update to 1.20.2.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
2018-10-30 21:42:39 +01:00
Ricardo Wurmus 67cfb83ff1
gnu: r-msnbase: Update to 2.6.4.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
2018-10-30 21:42:31 +01:00
Ricardo Wurmus 807d961cc9
gnu: r-methylkit: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
2018-10-30 21:42:20 +01:00
Ricardo Wurmus ac0166450d
gnu: r-wgcna: Update to 1.66.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
2018-10-30 21:42:09 +01:00
Ricardo Wurmus 1182460750
gnu: r-go-db: Update to 3.6.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
2018-10-30 21:42:00 +01:00
Ricardo Wurmus 466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
2018-10-30 21:41:12 +01:00
Ricardo Wurmus dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
2018-10-30 21:40:57 +01:00
Ricardo Wurmus 72408357fa
gnu: r-genomicranges: Update to 1.32.7.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
2018-10-30 21:40:48 +01:00
Ricardo Wurmus 9dad1957ab
gnu: r-limma: Update to 3.36.5.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
2018-10-30 21:40:40 +01:00
Ricardo Wurmus 57cf6a14f0
gnu: r-edger: Update to 3.22.5.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
2018-10-30 21:40:32 +01:00
Ricardo Wurmus eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
2018-10-30 21:40:22 +01:00
Ricardo Wurmus e563acb96b
gnu: r-iranges: Update to 2.14.12.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
2018-10-30 21:40:12 +01:00
Ricardo Wurmus 192c19f484
gnu: r-vegan: Update to 2.5-3.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
2018-10-30 21:40:00 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
2018-10-30 21:39:50 +01:00
Ricardo Wurmus 6ab5670aba
gnu: r-nloptr: Update to 1.2.1.
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
2018-10-30 21:39:39 +01:00
Ricardo Wurmus c5bd8a7c23
gnu: r-devtools: Update to 2.0.1.
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
2018-10-30 21:39:29 +01:00
Ricardo Wurmus aa99568639
gnu: r-evaluate: Update to 0.12.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
2018-10-30 21:39:16 +01:00
Ricardo Wurmus 60aac7ec16
gnu: r-robustbase: Update to 0.93-3.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
2018-10-30 21:39:06 +01:00
Ricardo Wurmus 16508df1d3
gnu: r-cardata: Update to 3.0-2.
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
2018-10-30 21:38:55 +01:00
Ricardo Wurmus 98a4b9d040
gnu: r-zoo: Update to 1.8-4.
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
2018-10-30 21:38:35 +01:00
Ricardo Wurmus 834f203c07
gnu: r-tidyselect: Update to 0.2.5.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
2018-10-30 21:38:25 +01:00
Ricardo Wurmus 33fb92aacd
gnu: r-doparallel: Update to 1.0.14.
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
2018-10-30 21:38:16 +01:00
Ricardo Wurmus 3ea7aefd59
gnu: r-snow: Update to 0.4-3.
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
2018-10-30 21:38:03 +01:00
Ricardo Wurmus 62a7492c90
gnu: r-plotrix: Update to 3.7-4.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
2018-10-30 21:37:53 +01:00
Ricardo Wurmus 943cab4f72
gnu: r-rstudioapi: Update to 0.8.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
2018-10-30 21:37:35 +01:00
Ricardo Wurmus 960425c9e3
gnu: r-commonmark: Update to 1.6.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
2018-10-30 21:37:25 +01:00
Ricardo Wurmus e028eaa992
gnu: r-coda: Update to 0.19-2.
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
2018-10-30 21:37:14 +01:00
Ricardo Wurmus 672ba7494b
gnu: r-data-table: Update to 1.11.8.
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
2018-10-30 21:37:03 +01:00
Ricardo Wurmus f75ee8c691
gnu: r-dplyr: Update to 0.7.7.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
2018-10-30 21:36:54 +01:00
Ricardo Wurmus 17f6198f06
gnu: r-rlang: Update to 0.3.0.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
2018-10-30 21:36:44 +01:00
Ricardo Wurmus 822863f8f9
gnu: r-r6: Update to 2.3.0.
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
2018-10-30 21:36:35 +01:00
Ricardo Wurmus 3a83251c4f
gnu: r-testthat: Update to 2.0.1.
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
2018-10-30 21:36:24 +01:00
Ricardo Wurmus cb448dd251
gnu: r-microbenchmark: Update to 1.4-6.
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
2018-10-30 21:36:13 +01:00
Ricardo Wurmus 9f7438355d
gnu: r-mine: Update to 0.6.
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
2018-10-30 21:36:04 +01:00
Ricardo Wurmus 9413424d2d
gnu: r-ggplot2: Update to 3.1.0.
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
2018-10-30 21:35:52 +01:00
Ricardo Wurmus 058394967c
gnu: r-digest: Update to 0.6.18.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
2018-10-30 21:35:40 +01:00
Ricardo Wurmus b85f805090
gnu: r-mgcv: Update to 1.8-25.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
2018-10-30 21:35:26 +01:00
Ricardo Wurmus 2f5e8f6094
gnu: r-mass: Update to 7.3-51.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
2018-10-30 21:35:12 +01:00
Ricardo Wurmus 2ea75a8369
gnu: Add r-npsurv.
* gnu/packages/cran.scm (r-npsurv): New variable.
2018-10-30 21:35:03 +01:00
Ricardo Wurmus 7c7ee6cf4c
gnu: Add r-lsei.
* gnu/packages/cran.scm (r-lsei): New variable.
2018-10-30 21:34:55 +01:00
Ricardo Wurmus 74cc74e434
gnu: Add r-summarytools.
* gnu/packages/cran.scm (r-summarytools): New variable.
2018-10-30 21:34:45 +01:00
Ricardo Wurmus 319a80ce96
gnu: Add r-pander.
* gnu/packages/cran.scm (r-pander): New variable.
2018-10-30 21:34:35 +01:00
Ricardo Wurmus 9b02d1a11e
gnu: Add r-rapportools.
* gnu/packages/cran.scm (r-rapportools): New variable.
2018-10-30 21:34:25 +01:00
Ricardo Wurmus 5df4e27fec
gnu: Add r-rcmdcheck.
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
2018-10-30 21:34:15 +01:00
Ricardo Wurmus 7d8f34707a
gnu: Add r-xopen.
* gnu/packages/cran.scm (r-xopen): New variable.
2018-10-30 21:34:05 +01:00
Ricardo Wurmus cbc8e6dd4a
gnu: Add r-remotes.
* gnu/packages/cran.scm (r-remotes): New variable.
2018-10-30 21:33:56 +01:00
Ricardo Wurmus 993426244e
gnu: Add r-sessioninfo.
* gnu/packages/cran.scm (r-sessioninfo): New variable.
2018-10-30 21:33:47 +01:00
Ricardo Wurmus efefd3ec42
gnu: Add r-usethis.
* gnu/packages/cran.scm (r-usethis): New variable.
2018-10-30 21:33:37 +01:00
Ricardo Wurmus 153e5b2ddc
gnu: Add r-clisymbols.
* gnu/packages/cran.scm (r-clisymbols): New variable.
2018-10-30 21:33:25 +01:00
Ricardo Wurmus d6871153c8
gnu: Add r-fs.
* gnu/packages/cran.scm (r-fs): New variable.
2018-10-30 21:33:13 +01:00
Ricardo Wurmus 21405e81e7
gnu: Add r-gh.
* gnu/packages/cran.scm (r-gh): New variable.
2018-10-30 21:33:00 +01:00
Ricardo Wurmus 03f8011220
gnu: Add r-ini.
* gnu/packages/cran.scm (r-ini): New variable.
2018-10-30 21:32:45 +01:00
Danny Milosavljevic 4df3e06210
gnu: rust: Document upstream's assessment.
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Add URL.
2018-10-30 20:42:04 +01:00
Danny Milosavljevic 52bc7df1a1
gnu: rust: Remove binary bootstrapper.
* gnu/packages/rust.scm (rust-bootstrap): Delete variable.
2018-10-30 20:42:00 +01:00
Danny Milosavljevic 44d530ef09
gnu: rust@1.23.0: Bootstrap from rust@1.22.0.
* gnu/packages/rust.scm (rust-1.23): Bootstrap from rust@1.22.0.
2018-10-30 20:41:55 +01:00
Danny Milosavljevic a75b8c08c0
gnu: rust@1.23.0: Inherit from rust@1.22.0.
* gnu/packages/rust.scm (rust-1.23)[inherit]: Inherit from rust-1.22.
[arguments]: Inherit from rust-1.22.  Delete "remove-ar" phase.
2018-10-30 20:41:50 +01:00
Danny Milosavljevic 7bf169f75c
gnu: rust: Hide "ar" entry from rust@1.21.0.
* gnu/packages/rust.scm (rust-1.21)[arguments]<#:phases>[remove-ar]: New
phase.
2018-10-30 20:41:45 +01:00
Danny Milosavljevic 46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums.
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
2018-10-30 20:20:55 +01:00
Efraim Flashner a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments.
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
2018-10-30 11:15:40 +02:00
Efraim Flashner 24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4.
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-30 11:15:39 +02:00
Efraim Flashner e726f0939e
gnu: mupdf: Update license list.
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
2018-10-30 11:15:36 +02:00
Efraim Flashner b1435fe735
gnu: mupdf: Update to 1.14.
* gnu/packages/pdf.scm (mupdf): Update to 1.14.
[source]: Don't remove all the bundled libraries.
[arguments]: Add 'configure-flags to use system libraries.
2018-10-30 11:15:09 +02:00
Efraim Flashner f8ddf719f3
gnu: mujs: Install shared library.
* gnu/packages/javascript.scm (mujs)[arguments]: Add custom phase to
install libmujs.so.
2018-10-30 11:03:48 +02:00
Efraim Flashner 1371e2250a
gnu: mujs: Update to 1.0.5.
* gnu/packages/javascript.scm (mujs): Update to 1.0.5.
2018-10-30 11:03:06 +02:00
Leo Famulari a2717e6986
gnu: calcurse: Use HTTPS URLs.
Reported by Marco van Hulten <marco@hulten.org>.

* gnu/packages/calcurse.scm (calcurse)[source, home-page]: Use HTTPS URLs.
2018-10-29 20:45:57 -04:00
Leo Famulari b4c93a78c8
gnu: xorg-server: Update to 1.20.3 [fixes CVE-2018-14665].
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.3.
2018-10-28 18:22:46 -04:00
Mathieu Othacehe 81f12f33b7
gnu: linux-libre: Enable BOCHS DRM support.
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Build DRM BOCHS support
as a module.  It adds DRM support for BOCHS dispi vga interface used by
qemu (-vga std option). It will also be useful for QEMU 3.0 to enable the new
"bochs-display" display device.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
2018-10-28 20:42:50 +09:00
Efraim Flashner 852a5692bb
gnu: qt@4: Use invoke.
* gnu/packages/qt.scm (qt@4)[arguments]: Use invoke.
2018-10-28 09:52:46 +02:00
Efraim Flashner 1f71daf499
gnu: qt@4: Update build config.
* gnu/packages/qt.scm (qt@4)[arguments]: Substitute hardcoded '/bin/ls'
invocation. Add configure-flags to not build the examples or demos.
Don't use the precompiled headers.
2018-10-28 09:52:38 +02:00
Efraim Flashner 3ea61f9642
gnu: qt: Use invoke.
* gnu/packages/qt.scm (qt)[arguments]: Use invoke.
2018-10-28 09:52:16 +02:00
Efraim Flashner 124351efad
gnu: qt: Add vulkan support.
* gnu/packages/qt.scm (qt, qtbase)[native-inputs]: Add vulkan-headers.
(qt@4)[native-inputs]: Don't add vulkan-headers.
(qttools)[native-inputs]: Add vulkan-headers.
2018-10-28 09:51:56 +02:00
Efraim Flashner d28af1991a
gnu: qt: Use system sqlite.
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
2018-10-28 09:51:25 +02:00
Efraim Flashner 7930cfc989
gnu: qt: Update to 5.11.2.
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.11.2.
2018-10-28 09:51:05 +02:00
Tobias Geerinckx-Rice 2b9b4b1fe3
gnu: hashcat-utils: Update to 1.9.
And trim lines to 80 characters.

* gnu/packages/password-utils.scm (hashcat-utils): Update to 1.9.
[source]: Parametrise.
2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 2792d8a865
gnu: fzy: Update to 1.0.
* gnu/packages/shellutils.scm (fzy): Update to 1.0.
2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 31b619566d
gnu: fzy: Don't use unstable tarball.
* gnu/packages/shellutils.scm (fzy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 6135735b52
gnu: perl-www-mechanize: Update to 1.89.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.89.
2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice fc82538c15
gnu: perl-xml-xpath: Update to 1.44.
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.44.
2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice a8b12397a1
gnu: flatbuffers: Fix typo in description.
* gnu/packages/serialization.scm (flatbuffers)[description]: Hyphenate.
2018-10-28 02:34:06 +01:00
Kei Kebreau f3dd10dfe7
gnu: libmspack: Update to 0.8 [fixes CVE-2018-{18584,18585,18586}].
* gnu/packages/compression.scm (libmspack): Update to 0.8.
2018-10-27 20:04:20 -04:00
Ludovic Courtès 1f889cac4e
gnu: mailutils: Add dependency on GSASL.
* gnu/packages/mail.scm (mailutils)[inputs]: Add GSASL.
2018-10-28 01:10:55 +02:00
Ludovic Courtès ac3b4b124f
gnu: mailutils: Install modules to …/guile/site/2.2.
* gnu/packages/mail.scm (mailutils)[arguments]: Pass
"--with-guile-site-dir".
2018-10-28 01:09:54 +02:00
Efraim Flashner 20a3df0fd3
gnu: mailutils: Update to 3.5.
* gnu/packages/mail.scm (mailutils): Update to 3.5.
[source]: Remove patch, remove snippet.
[native-inputs]: Remove flex, bison.
[inputs]: Remove guile-2.0, add guile-2.2.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-28 00:02:08 +03:00
Ricardo Wurmus 763d44920d
gnu: guile-sdl2: Update to 0.3.1.
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.1.
2018-10-27 20:08:50 +02:00
Mădălin Ionel Patrașcu b509df82de
gnu: Add r-abundant.
* gnu/packages/cran.scm (r-abundant): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-10-27 18:54:39 +02:00
Mădălin Ionel Patrașcu b5a310056c
gnu: Add r-quic.
* gnu/packages/cran.scm (r-quic): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-10-27 18:54:39 +02:00
Ricardo Wurmus 67e0fb8b49
gnu: Add xrandr-invert-colors.
* gnu/packages/xdisorg.scm (xrandr-invert-colors): New variable.
2018-10-27 18:54:39 +02:00
Tomáš Čech e9a041577a
gnu: Add telegram-purple.
* gnu/packages/messaging.scm (telegram-purple): New variable.
* gnu/packages/patches/telegram-purple-adjust-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-10-27 16:39:29 +02:00
Ludovic Courtès 244a0d5aad
gnu: libzmf: Disable '-Werror'.
Fixes builds on i686-linux.

* gnu/packages/libreoffice.scm (libzmf)[arguments]: New field.
2018-10-27 16:39:29 +02:00
Pierre Neidhardt 1316413558
gnu: git: Add "subtree" output.
* gnu/packages/version-control.scm (git)[outputs]: Add "subtree".
2018-10-27 16:29:47 +02:00
Meiyo Peng cbea1e8dd2
gnu: lxqt-build-tools: Define LXQT_DATA_DIR and LXQT_ETC_XDG_DIR.
* gnu/packages/lxqt.scm (lxqt-build-tools)[arguments]: Define LXQT_DATA_DIR
and LXQT_ETC_XDG_DIR in the configure flags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-27 19:50:41 +08:00
Meiyo Peng 6f00fb75ca
gnu: lxqt: Correct licenses for several packages.
* gnu/packages/lxqt.scm (pcmanfm-qt, lximage-qt, pavucontrol-qt, qtermwidget)
(qterminal, screengrab, lxqt): Correct license to GPL2+.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-27 18:17:08 +08:00
宋文武 a46c00a3d8
gnu: lxqt: Propagate qterminal actually.
* gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Fix typo of 'qterminal'.
2018-10-27 11:34:57 +08:00
Tobias Geerinckx-Rice 3825b44448
gnu: xmlsec-nss: Fix tests (and hence build).
* gnu/packages/xml.scm (xmlsec-nss)[native-inputs]: Add nss:bin to
provide the certutil command.
2018-10-27 04:49:19 +02:00
Tobias Geerinckx-Rice 4795e5e177
gnu: units: Update to 2.18.
* gnu/packages/maths.scm (units): Update to 2.18.
2018-10-27 04:47:56 +02:00
Tobias Geerinckx-Rice 6d9a690927
gnu: parallel: Update to 20181022.
* gnu/packages/parallel.scm (parallel): Update to 20181022.
2018-10-27 04:47:19 +02:00
Tobias Geerinckx-Rice 574d877e40
gnu: gvpe: Update to 3.1.
* gnu/packages/vpn.scm (gvpe): Update to 3.1.
[source]: Remove obsolete snippet.
[native-inputs]: Add pkg-config.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b2d286545d
gnu: gama: Update to 2.01.
* gnu/packages/gps.scm (gama): Update to 2.01.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b106b78cf8
gnu: perl-x11-xcb: Update to 0.18.
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.18.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice 429a332b1c
gnu: flatbuffers: Update to 1.10.0.
* gnu/packages/serialization.scm (flatbuffers): Update to 1.10.0.
2018-10-27 04:47:18 +02:00
Eric Bavier 829785c11d
gnu: Add tnef.
* gnu/packages/mail.scm (tnef): New variable.
2018-10-26 21:16:42 -05:00
HiPhish 01a0a0c445
gnu: Add lua5.1-lpeg and lua5.1-lmpack.
* gnu/packages/lua.scm (lua5.1-lpeg): New variable.
* gnu/packages/serialization.scm (lua5.1-libmpack): New variable.

The packages lua-lpeg and lua-libmpack had no Lua 5.1 variants. These
packages will be needed to build Neovim properly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:17:00 +02:00
Pierre-Antoine Rouby 3239dcd38d
gnu: Add jp2a.
* gnu/packages/image.scm: New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:16:13 +02:00
Ludovic Courtès fdf0248428
gnu: sbcl-lift: Fix 'license' field.
The invalid 'license' field was preventing evaluations from completing.

* gnu/packages/lisp.scm (sbcl-lift)[license]: Change to LICENSE:EXPAT.
2018-10-26 21:07:03 +02:00
Nikolai Merinov 2e2b8635b9
gnu: rust: Update to 1.28.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.27): ... this.
(rust): New variable.
2018-10-26 18:11:15 +02:00
Nikolai Merinov e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues.
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
2018-10-26 18:11:15 +02:00
Meiyo Peng 1fdcee026b
gnu: Add lxqt.
* gnu/packages/lxqt.scm (lxqt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng a457e3f6ef
gnu: libqtxdg: Simplify configure flags.
* gnu/packages/lxqt.scm (libqtxdg)[arugemnts]: Use relative path for
'QTXDGX_ICONENGINEPLUGIN_INSTALL_PATH'.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng 097166dfb0
gnu: lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.
* gnu/packages/lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:04 +08:00
Meiyo Peng 31fd62c8ca
gnu: Add obconf-qt.
* gnu/packages/lxqt.scm (obconf-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:06:57 +08:00
Meiyo Peng 32b74b7028
gnu: Add compton-conf.
* gnu/packages/lxqt.scm (compton-conf): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:41:38 +08:00
Meiyo Peng 9886134cc6
gnu: Add qps.
* gnu/packages/lxqt.scm (qps): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:36:43 +08:00
Meiyo Peng 7e9e775f44
gnu: Add qterminal.
* gnu/packages/lxqt.scm (qterminal): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:31:15 +08:00
Meiyo Peng 4b88ab554c
gnu: Add screengrab.
* gnu/packages/lxqt.scm (screengrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:20:21 +08:00
Meiyo Peng 604bdae7e5
gnu: Add lximage-qt.
* gnu/packages/lxqt.scm (lximage-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:12:17 +08:00
Meiyo Peng 26127ebb97
gnu: lxqt.scm: Sort packages into base, core, etc.
* gnu/packages/lxqt.scm: Sort packages into base, core, etc.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:05:12 +08:00
Meiyo Peng 0aab234954
gnu: Add qtermwidget.
* gnu/packages/lxqt.scm (qtermwidget): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 18:54:16 +08:00
Tobias Geerinckx-Rice 21c51ebd66
gnu: hplip: Update home page.
* gnu/packages/cups.scm (hplip)[home-page]: Follow its permanent
redirection.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice b17004f9f9
gnu: hplip: Update to 3.18.9.
* gnu/packages/cups.scm (hplip): Update to 3.18.9.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 2fba511e0f
gnu: libsigrok: Update to 0.5.1.
* gnu/packages/electronics.scm (libsigrok): Update to 0.5.1.
[arguments]: Adjust to split udev rules and clean up a little.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 0e8e29088f
gnu: dnsmasq: Update to 2.80 [security fixes].
* gnu/packages/dns.scm (dnsmasq): Update to 2.80.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice e81ddedaef
gnu: tinc: Use HTTPS for sources and home page.
* gnu/packages/vpn.scm (tinc)[source, home-page]: Use HTTPS.
2018-10-26 02:30:51 +02:00
Leo Famulari dea0178fb1
gnu: Mercurial: Update to 4.7.2.
* gnu/packages/version-control.scm (mercurial): Update to 4.7.2.
2018-10-25 20:00:27 -04:00
Meiyo Peng 84f6a9907b
gnu: Add pavucontrol-qt.
* gnu/packages/lxqt.scm (pavucontrol-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:38:57 +08:00
Meiyo Peng 8b1d43a755
gnu: Add lxqt-themes.
* gnu/packages/lxqt.scm (lxqt-themes): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:34:55 +08:00
Meiyo Peng 5663b5b073
gnu: Add lxqt-qtplugin.
* gnu/packages/lxqt.scm (lxqt-qtplugin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:25:54 +08:00
Meiyo Peng 643961bbc6
gnu: Add lxqt-powermanagement.
* gnu/packages/lxqt.scm (lxqt-powermanagement): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:21:26 +08:00
Meiyo Peng ca302c3e8c
gnu: Add lxqt-openssh-askpass.
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:17:16 +08:00
Meiyo Peng bf0da63aae
gnu: Add lxqt-policykit.
* gnu/packages/lxqt.scm (lxqt-policykit): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng a98000a462
gnu: Add lxqt-notificationd.
* gnu/packages/lxqt.scm (lxqt-notificationd): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng f2b48558df
gnu: lxqt.scm: Move qttools from inputs to native-inputs.
* gnu/packages/lxqt.scm: Move qttools from inputs to native-inputs.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:13 +08:00
Meiyo Peng 35bfe41a01
gnu: Add lxqt-config.
* gnu/packages/lxqt.scm (lxqt-config): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 19:16:18 +08:00
Ricardo Wurmus 7b63047c94
gnu: Add r-sjplot.
* gnu/packages/cran.scm (r-sjplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 489a6178e6
gnu: Add r-ggeffects.
* gnu/packages/cran.scm (r-ggeffects): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 413944234c
gnu: Add r-glmmtmb.
* gnu/packages/cran.scm (r-glmmtmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus aa4bde0b3a
gnu: Add r-sjstats.
* gnu/packages/cran.scm (r-sjstats): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 3b8a3f5548
gnu: Add r-tmb.
* gnu/packages/cran.scm (r-tmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9b3ecb60e2
gnu: Add r-bayesplot.
* gnu/packages/cran.scm (r-bayesplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus bd531e83d1
gnu: Add r-coin.
* gnu/packages/cran.scm (r-coin): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 63fcb88a50
gnu: Add r-pwr.
* gnu/packages/cran.scm (r-pwr): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 55a08dceb5
gnu: Add r-emmeans.
* gnu/packages/cran.scm (r-emmeans): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 7753b54366
gnu: Add r-multcomp.
* gnu/packages/cran.scm (r-multcomp): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 6ce07cf99d
gnu: Add r-th-data.
* gnu/packages/cran.scm (r-th-data): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 302db58552
gnu: Add r-sandwich.
* gnu/packages/cran.scm (r-sandwich): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 69bb2d9966
gnu: r-sjmisc: Update to 2.7.5.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9bf745c931
gnu: r-sjlabelled: Update to 1.0.14.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14.
2018-10-25 05:17:42 +02:00
Tobias Geerinckx-Rice 9ac59ad30a
gnu: sfml: Update to 2.5.1.
* gnu/packages/game-development.scm (sfml): Update to 2.5.1.
2018-10-25 04:59:33 +02:00
Tobias Geerinckx-Rice 95f6adae34
gnu: sfml: Don't use unstable tarball.
* gnu/packages/game-development.scm (sfml)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-25 04:59:32 +02:00
Tobias Geerinckx-Rice b865e7c254
gnu: cdogs-sdl: Update to 0.6.8.
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.8.
2018-10-25 04:59:29 +02:00
Ricardo Wurmus e2ec95c4eb
gnu: Add pdfpc.
* gnu/packages/pdf.scm (pdfpc): New variable.
2018-10-25 01:08:09 +02:00
Tobias Geerinckx-Rice f65fdd95df
gnu: Add hangups.
* gnu/packages/messaging.scm (hangups): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 56a5ef4cb2
gnu: Add python-mechanicalsoup.
* gnu/packages/python-web.scm (python-mechanicalsoup)
(python2-mechanicalsoup): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 11d99192c7
gnu: Add python-reparser.
* gnu/packages/python.scm (python-reparser, python2-reparser):
New public variable.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice d4eb8a21a6
gnu: Add python-readlike.
* gnu/packages/python.scm (python-readlike, python2-readlike):
New public variables.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice 5b59c77585
gnu: minixml: Update to 2.12.
* gnu/packages/xml.scm (minixml): Update to 2.12.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice ac9f481979
gnu: iproute2: Update to 4.19.0.
* gnu/packages/linux.scm (iproute): Update to 4.19.0.
2018-10-24 21:34:20 +02:00
Tobias Geerinckx-Rice f437e39aa2
gnu: loksh: Use PREFIX.
* gnu/packages/shells.scm (loksh)[argumentss]: Substitute PREFIX for
DESTDIR #:make-flags.
2018-10-24 21:34:20 +02:00
Meiyo Peng c1144c78ad
gnu: Add libkscreen.
* gnu/packages/kde.scm (libkscreen): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng a6b941ddd1
gnu: lxqt.scm: Add prefix to licenses imports.
* gnu/packages/lxqt.scm: Import (guix licenses) with prefix "license:".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 34e08de321
gnu: Add lxqt-admin.
* gnu/packages/lxqt.scm (lxqt-admin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00