Ricardo Wurmus
37200dbcc3
gnu: r-rhdf5lib: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0.
[source]: Add snippet to remove bundled binaries.
[arguments]: Replace references to hdf5 with references to hdf5-1.10.
[native-inputs]: Likewise.
[propagated-inputs]: Replace hdf5 with hdf5-1.10.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
8e48d36f26
gnu: r-hdf5array: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
611a255d2b
gnu: r-rhdf5: Update to 2.26.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
a1c2bf8e54
gnu: r-rcas: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.8.0.
[native-inputs]: Remove r-testthat and ghc-pandoc-citeproc.
[propagated-inputs]: Add r-annotationdbi, r-genomeinfodb, and r-genomicranges;
remove r-bsgenome-mmusculus-ucsc-mm9, r-bsgenome-celegans-ucsc-ce10,
r-bsgenome-dmelanogaster-ucsc-dm3, r-org-ce-eg-db, r-org-dm-eg-db, and
r-org-mm-eg-db.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
900ce2bafd
gnu: r-delayedmatrixstats: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.4.0.
[propagated-inputs]: Add r-biocparallel and r-hdf5array.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
70a3a76ba7
gnu: r-scran: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.1.
[propagated-inputs]: Add r-biocneighbors; remove r-dt, r-fnn, r-ggplot2,
r-shiny, and r-viridis.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
48f2791496
gnu: r-scater: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
[propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and r-tximport.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
f93ec63ccf
gnu: r-singlecellexperiment: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
3c833608f3
gnu: r-beachmat: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.4.0.
[propagated-inputs]: Add r-biocgenerics.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
edb91244c3
gnu: r-qvalue: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
d055f199a9
gnu: r-hitc: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.26.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
8023912934
gnu: r-fithic: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.8.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
7468a76480
gnu: r-sushi: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.20.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
85b16c05e8
gnu: r-gwascat: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.14.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
d57445c9b2
gnu: r-gviz: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
ea55326dc7
gnu: r-gqtlstats: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
da679b5202
gnu: r-ldblock: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.12.0.
2018-11-07 12:27:16 +01:00
Ricardo Wurmus
4b91335566
gnu: r-erma: Update to 0.14.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.14.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
220ac15e3f
gnu: r-snpstats: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.32.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
181a843143
gnu: r-gqtlbase: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.14.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
f20c766413
gnu: r-ggbio: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.30.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
e7a0bc1ccf
gnu: r-biovizbase: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
cdab2dcfea
gnu: r-organismdbi: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.24.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
e8e78c4966
gnu: r-ensembldb: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
0c96e4b290
gnu: r-dirichletmultinomial: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
5ae5a8ebfc
gnu: r-complexheatmap: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.20.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
d78c6aca55
gnu: r-genomicfiles: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.18.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
122e099e72
gnu: r-gage: Update to 2.32.0.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
4984212786
gnu: r-keggrest: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.22.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
95df764c01
gnu: r-fastseg: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.28.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
147633d4c1
gnu: r-annotationhub: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.1.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
d7ea34bf99
gnu: r-interactivedisplaybase: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.20.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
b03951f26b
gnu: r-edaseq: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
7812e6b82e
gnu: r-deseq: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
800954eba4
gnu: r-aroma-light: Update to 3.12.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.12.0.
2018-11-07 12:27:15 +01:00
Ricardo Wurmus
675d91a035
gnu: r-msnid: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
762aca7270
gnu: r-msnbase: Update to 2.8.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
73d7475246
gnu: r-pcamethods: Update to 1.74.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.74.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
2c4311dc7c
gnu: r-mzid: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
0e16fc4699
gnu: r-vsn: Update to 3.50.0.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.50.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
2b085484c0
gnu: r-affy: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.60.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
511abd7add
gnu: r-affyio: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.52.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
691ce09fd3
gnu: r-protgenerics: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
8af8688339
gnu: r-sva: Update to 3.30.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
18604a76e4
gnu: r-methylkit: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
739a856db8
gnu: r-copywriter: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
2e9d8116fb
gnu: r-chipseq: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.32.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
cec8f0920b
gnu: r-annotationfilter: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.6.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
d2b60be596
gnu: r-tximport: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
ad90921ddc
gnu: r-mutationalpatterns: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.8.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
338f860cc6
gnu: r-bamsignals: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
48196899cd
gnu: r-rhtslib: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
7d7c702c03
gnu: r-zlibbioc: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.28.0.
2018-11-07 12:27:14 +01:00
Ricardo Wurmus
2919fefe12
gnu: r-motifrg: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.26.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
34f1c60c78
gnu: r-seqlogo: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.48.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
c5b0815c44
gnu: r-genomation: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.14.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
45ba2caedb
gnu: r-seqpattern: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.14.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
d11bc259a8
gnu: r-impute: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.56.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
78ecdbc00a
gnu: r-bsgenome: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.50.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
44fa14dfa3
gnu: r-topgo: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.34.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
8a0d57d26e
gnu: r-genomicfeatures: Update to 1.34.1.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.1.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
c5f1d1ce80
gnu: r-rtracklayer: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
52b95337e8
gnu: r-genomicalignments: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
9fd4350e5a
gnu: r-summarizedexperiment: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.12.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
de4c38f80b
gnu: r-delayedarray: Update to 0.8.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.8.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
7f3778eb06
gnu: r-rsamtools: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
4804c59227
gnu: r-biostrings: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
cd8828918f
gnu: r-biocparallel: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
3359d44210
gnu: r-biomart: Update to 2.38.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.38.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
3986e0dee5
gnu: r-annotationdbi: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.44.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
5b82e12a99
gnu: r-biobase: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.42.0.
2018-11-07 12:27:13 +01:00
Ricardo Wurmus
8d3906a95f
gnu: r-genomicranges: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.34.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
fb10fb72ba
gnu: r-xvector: Update to 0.22.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.22.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
78d2ffdc73
gnu: r-limma: Update to 3.38.2.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.2.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
ca2945c316
gnu: r-variantannotation: Update to 1.28.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.1.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
08cd2d5b59
gnu: r-edger: Update to 3.24.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
12871693fe
gnu: r-genomeinfodb: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
9a8dd51979
gnu: r-iranges: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.16.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
a037453554
gnu: r-s4vectors: Update to 0.20.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
70f2758f71
gnu: r-dnacopy: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.56.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
a127d3522a
gnu: r-bioccheck: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.18.0.
[propagated-inputs]: Add r-knitr and r-biocmanager; remove r-biocinstaller.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
6087f5ce37
gnu: r-biocstyle: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.10.0.
[propagated-inputs]: Add biocmanager.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
c8dbb5fa7f
gnu: r-biocviews: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.1.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
36d7d823a4
gnu: r-biocinstaller: Update to 1.32.1.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.32.1.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
2f28ffd81d
gnu: r-biocgenerics: Update to 0.28.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.28.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
5c996cab4c
gnu: r-grohmm: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.16.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
bf25930cf6
gnu: r-systempiper: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
9adf78c21e
gnu: r-shortread: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.40.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
4a4b5b8537
gnu: r-gostats: Update to 2.48.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.48.0.
2018-11-07 12:27:12 +01:00
Ricardo Wurmus
95ae5acc89
gnu: r-category: Update to 2.48.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
6dfb0b25ae
gnu: r-gseabase: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.44.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
19a6149190
gnu: r-rbgl: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
2ff6604a53
gnu: r-annotationforge: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.24.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
856444a0a1
gnu: r-dexseq: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
b5c552e654
gnu: r-deseq2: Update to 1.22.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.1.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
85fb33a051
gnu: r-genefilter: Update to 1.64.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.64.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
f4a95a0d15
gnu: r-geneplotter: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.60.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
dadd682c53
gnu: r-copynumber: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.22.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
090d4c0159
gnu: r-annotate: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.60.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
00281ea3cd
gnu: r-modelmetrics: Update to 1.2.2.
...
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.2.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
9bd78484a2
gnu: r-preprocesscore: Update to 1.44.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.44.0.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
1b3552310d
gnu: r-tidyr: Update to 0.8.2.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.2.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
466397c35b
gnu: r-dt: Update to 0.5.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.5.
[propagated-inputs]: Add r-promises.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
9094eb892c
gnu: r-roxygen2: Update to 6.1.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.1.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
0de3ebb099
gnu: r-survival: Update to 2.43-1.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.43-1.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
83ca17d8e8
gnu: r-matrix: Update to 1.2-15.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-15.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
1966d8ffc7
gnu: r-lattice: Update to 0.20-38.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-38.
2018-11-07 12:26:34 +01:00
Ricardo Wurmus
600a25eb04
gnu: r-mass: Update to 7.3-51.1.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.1.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
a44f8b00fe
gnu: r-pander: Update to 0.6.3.
...
* gnu/packages/cran.scm (r-pander): Update to 0.6.3.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
7466c3bb06
gnu: r-rcmdcheck: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1.
[propagated-inputs]: Add r-sessioninfo.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
fc532b452f
gnu: r-remotes: Update to 2.0.2.
...
* gnu/packages/cran.scm (r-remotes): Update to 2.0.2.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
3d6fa1a3ad
gnu: r-sessioninfo: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
244a5c43ec
gnu: r-flextable: Update to 0.4.6.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
84d0d860e1
gnu: r-sjmisc: Update to 2.7.6.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6.
[propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
cea8a60747
gnu: r-xts: Update to 0.11-2.
...
* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
5d986a3b41
gnu: r-psych: Update to 1.8.10.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
56af171ffd
gnu: r-ipred: Update to 0.9-8.
...
* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
ec0ee08576
gnu: r-ffbase: Update to 0.12.7.
...
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
65dd0e6748
gnu: r-pkgload: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
0dd84df121
gnu: r-ps: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
269182b0f1
gnu: r-rgraphviz: Update to 2.26.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
bb47aca5e7
gnu: Add hdf5-1.10.
...
* gnu/packages/maths.scm (hdf5-1.10): New variable.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
d639d8884c
gnu: r-regioner: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
286157dc49
gnu: Add r-biocneighbors.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
2018-11-07 12:26:33 +01:00
Ricardo Wurmus
318bcbc451
gnu: r-dnabarcodes: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
6f1e1d0f88
gnu: r-inspect: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
c348cfed74
gnu: r-rots: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
016afac30f
gnu: r-glimma: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
6ea9ae9c39
gnu: r-goseq: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
b858338c76
gnu: r-ctc: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
bbc4787cf2
gnu: r-interactionset: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
c4fed658a9
gnu: r-riboseqr: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
e22e462b33
gnu: r-riboprofiling: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
e9427b2c78
gnu: r-ripseeker: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
aa802eafb6
gnu: r-chipcomp: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
4728e27511
gnu: r-bayseq: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
14520b640e
gnu: r-graph: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
95ee4a466b
gnu: r-multtest: Update to 2.38.0.
...
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
a92f523026
gnu: r-qdnaseq: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
9add0933d0
gnu: r-cghcall: Update to 2.44.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
46cdceef4c
gnu: r-cghbase: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
f1c606ce8c
gnu: r-marray: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
2018-11-07 12:26:32 +01:00
Ricardo Wurmus
98652568a4
gnu: r-diffbind: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus
6168692159
gnu: r-hpar: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus
1e605c030f
gnu: Add r-biocmanager.
...
* gnu/packages/cran.scm (r-biocmanager): New variable.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus
b58940cb03
gnu: Add r-ncdf4.
...
* gnu/packages/cran.scm (r-ncdf4): New variable.
2018-11-07 12:26:31 +01:00
Ricardo Wurmus
bfa5662e38
gnu: Add r-rcppannoy.
...
* gnu/packages/cran.scm (r-rcppannoy): New variable.
2018-11-07 12:26:31 +01:00
Mathieu Othacehe
8243f4e55a
gnu: slang: Use a correct location for terminfo dirs.
...
As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.
* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
2018-11-07 18:39:19 +09:00
Mathieu Othacehe
a7903ca150
gnu: terminals: Change libtsm and kmscon repositories.
...
Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.
* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm " as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon " as new origin and
switch to git-fetch method.
2018-11-07 18:27:01 +09:00
Mathieu Othacehe
581720bc74
gnu: Add guile-newt.
...
* gnu/packages/guile.scm (guile-newt): New variable.
2018-11-07 18:09:30 +09:00
Efraim Flashner
cbb5d2e145
gnu: kodi: Fix typo.
...
This is a follow-up to 2c17bd7b29
.
* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
2018-11-07 10:38:13 +02:00
Leo Famulari
02e2133bd2
gnu: LibreOffice: Update to 6.1.3.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
2018-11-06 23:13:50 -05:00
Leo Famulari
b20aef98a0
gnu: GnuPG: Update to 2.2.11.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
2018-11-06 17:26:45 -05:00
Marius Bakke
c6b05bacc0
gnu: nginx: Update to 1.14.1 [security fixes].
...
This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845.
* gnu/packages/web.scm (nginx): Update to 1.14.1.
2018-11-06 21:34:30 +01:00
Leo Famulari
f25614229b
gnu: Syncthing: Update to 0.14.52.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
2018-11-06 11:16:22 -05:00
Ludovic Courtès
4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms.
...
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06 17:08:46 +01:00
Stefan Stefanović
158c02dffa
gnu: Add xcb-util-errors.
...
* gnu/packages/xorg.scm (xcb-util-errors): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-06 17:00:02 +01:00
Ludovic Courtès
3527f600b5
gnu: guile-sqlite3: Update home page.
...
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
2018-11-06 17:00:01 +01:00
lakshmi
cddc0300b7
gnu: Add r-weights.
...
* gnu/packages/cran.scm (r-weights): New variable.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-11-06 16:06:42 +01:00
Tobias Geerinckx-Rice
fe4fb278b8
gnu: youtube-dl: Update to 2018.11.03.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
2018-11-06 15:34:37 +01:00
Tobias Geerinckx-Rice
b1eeeb8dd4
gnu: terraform-docs: Update to 0.5.0.
...
* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0.
[native-inputs]: Remove them all.
2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice
c3b8300af3
gnu: jq: Don't use NAME in source URI.
...
* gnu/packages/web.scm (jq)[source]: Code more hard.
2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice
418dd6adb5
gnu: jq: Update to 1.6.
...
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-06 15:34:36 +01:00
Rutger Helling
c58f3ebaf8
gnu: ffmpeg: Update to 4.1.
...
* gnu/packages/video.scm (ffmpeg): Update to 4.1.
2018-11-06 12:02:59 +01:00
Efraim Flashner
730e5fbc66
Revert "gnu: c-ares: Update to 1.15.0."
...
c-ares has more than 3000 dependant packages.
This reverts commit b588adc96f
.
2018-11-06 12:22:02 +02:00
Efraim Flashner
b588adc96f
gnu: c-ares: Update to 1.15.0.
...
* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
2018-11-06 08:32:56 +02:00
Marius Bakke
adde15186d
gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
2018-11-05 23:53:30 +01:00
Marius Bakke
208e82297c
gnu: xapian: Update to 1.4.9.
...
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
2018-11-05 23:46:38 +01:00
Marius Bakke
d79c8148cc
gnu: libssh: Update to 0.7.7.
...
* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
2018-11-05 23:46:38 +01:00
Marius Bakke
b5a887637c
gnu: strace: Update to 4.25.
...
* gnu/packages/linux.scm (strace): Update to 4.25.
2018-11-05 23:46:38 +01:00
Marius Bakke
876428dd98
gnu: libmtp: Update to 1.1.16.
...
* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
2018-11-05 23:46:38 +01:00
Marius Bakke
039241bc96
gnu: libgit2: Update to 0.26.8.
...
* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
2018-11-05 23:46:38 +01:00
Marius Bakke
c98a7e6b91
gnu: i3-wm: Update to 4.16.
...
* gnu/packages/wm.scm (i3-wm): Update to 4.16.
2018-11-05 23:46:38 +01:00
Marius Bakke
9c415f96ec
gnu: libgphoto2: Update to 2.5.20.
...
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
2018-11-05 23:46:38 +01:00
Marius Bakke
66044a3698
gnu: glm: Update to 0.9.9.3.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
2018-11-05 23:46:38 +01:00
Marius Bakke
64b60f38e7
gnu: ffmpeg: Update to 4.0.3.
...
* gnu/packages/video.scm (ffmpeg): Update to 4.0.3.
2018-11-05 23:46:38 +01:00
Marius Bakke
c5e5711002
gnu: ffmpeg@3.4: Update to 3.4.5.
...
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5.
2018-11-05 23:46:37 +01:00
Marius Bakke
196653145a
gnu: feh: Update to 2.28.1.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.28.1.
2018-11-05 23:46:37 +01:00
Marius Bakke
00815eea38
gnu: libsoup: Update to 2.64.2.
...
* gnu/packages/gnome.scm (libsoup): Update to 2.64.2.
2018-11-05 23:46:37 +01:00
Marius Bakke
0a56ffdf1f
gnu: mono: Update home page.
...
* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS.
2018-11-05 23:46:37 +01:00
Leo Famulari
288d24800d
gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}].
...
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6.
2018-11-05 16:22:11 -05:00
Pierre Neidhardt
426ffb830a
gnu: emacs-mu4e-conversation: Update to 20181105.
...
* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181105.
2018-11-05 20:22:06 +01:00
Pierre Neidhardt
695db2f98a
gnu: Add emacs-helm-slime.
...
* gnu/packages/emacs.scm (emacs-helm-slime): New variable.
2018-11-05 13:58:33 +01:00
Mark H Weaver
c9f3d38be4
gnu: linux-libre: Update to 4.19.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.1.
(%linux-libre-hash): Update hash.
2018-11-05 04:00:45 -05:00
Mark H Weaver
28c717213d
gnu: linux-libre@4.14: Update to 4.14.79.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.79.
(%linux-libre-4.14-hash): Update hash.
2018-11-05 04:00:43 -05:00
Eric Bavier
cddc044ce7
libreoffice: honor '--cores=...' during build.
...
* gnu/packages/libreoffice.scm (libreoffice)[configure-flags]: Add
'--with-parallelism' flag.
2018-11-04 21:56:39 -06:00
Danny Milosavljevic
64eb038eef
gnu: Add fswatch.
...
* gnu/packages/monitoring.scm (fswatch): New variable.
2018-11-05 03:01:21 +01:00
Luther Thompson
1417f50317
gnu: python-ilinkedlist: Update to 0.2.0.
...
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.2.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-05 00:08:47 +01:00
Vagrant Cascadian
b6e9514864
gnu: pelican: Update to 3.7.1.
...
* gnu/packages/python.scm (pelican): Update to 3.7.1.
[home-page]: Use HTTPS URL.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-05 00:08:47 +01:00
Pkill -9
c834bd3bb2
gnu: xonotic: Add icon and category to desktop files.
...
* gnu/packages/games.scm (xonotic): Add icon ("xonotic") and category
("Game") to the .desktop files for Xonotic.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-05 00:08:47 +01:00
Pierre Neidhardt
97b7b96efc
gnu: go-github-com-urfave-cli: Remove duplicate declaration.
...
* gnu/packages/golang.scm (go-github-com-urfave-cli): Remove duplicate declaration.
2018-11-04 23:33:24 +01:00
Efraim Flashner
30012b7408
gnu: myrepos: Wrap the webcheckout binary.
...
* gnu/packages/version-control.scm (myrepos)[arguments]: Add a custom
'wrap-webcheckout phase to wrap webcheckout with its perl libraries.
[inputs]: Add perl-encode-locale, perl-html-parser, perl-http-date,
perl-http-message, perl-libwww, perl-try-tiny, perl-uri.
2018-11-04 12:45:27 +02:00
Efraim Flashner
f909e21797
gnu: debian-archive-keyring: Update to 2018.1.
...
* gnu/packages/debian.scm (debian-archive-keyring): Update to 2018.1.
[source]: Download from git repository.
2018-11-04 12:00:13 +02:00
Efraim Flashner
2e77bbed71
gnu: ruby@2.3: Update to 2.3.8.
...
* gnu/packages/ruby.scm (ruby@2.3): Update to 2.3.8.
2018-11-04 12:00:13 +02:00
Efraim Flashner
d4b5e4bb73
gnu: debootstrap: Update to 1.0.109.
...
* gnu/packages/debian.scm (debootstrap): Update to 1.0.109.
2018-11-04 12:00:10 +02:00
Arun Isaac
3e84ce51fb
gnu: mpop: Update to 1.4.0.
...
* gnu/packages/mail.scm (mpop): Update to 1.4.0.
2018-11-04 10:36:17 +05:30
Efraim Flashner
e9f305a1c8
gnu: sbcl-lift: Don't keep the bundled website.
...
* gnu/packages/lisp.scm (sbcl-lift)[source]: Remove bundled website.
[arguments]: Remove custom 'make-gzips-writable phase.
2018-11-03 20:43:35 +02:00
Ludovic Courtès
0e091b3e93
gnu: totem: Update to 3.26.2.
...
* gnu/packages/gnome.scm (totem): Update to 3.26.2.
2018-11-03 15:44:40 +01:00
Ludovic Courtès
504f0cf198
gnu: emacs-debbugs: Update to 0.16.
...
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.16.
2018-11-03 15:44:24 +01:00
Ludovic Courtès
a7c8574f39
gnu: perl-image-exiftool: Update to 11.11.
...
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.11.
2018-11-03 15:16:42 +01:00
Ludovic Courtès
46c8f53ba8
gnu: emacs-dired-du: Update to 0.5.1.
...
* gnu/packages/emacs.scm (emacs-dired-du): Update to 0.5.1.
2018-11-03 15:16:20 +01:00
Ludovic Courtès
8e5c59868c
gnu: diffoscope: Update to 104.
...
* gnu/packages/package-management.scm (diffoscope): Update to 104.
2018-11-03 15:16:02 +01:00
Arun Isaac
b1c7f5fff9
gnu: emacs-emms: Update to 5.1.
...
* gnu/packages/emacs.scm (emacs-emms): Update to 5.1.
2018-11-03 19:14:05 +05:30
Tobias Geerinckx-Rice
3995e85462
gnu: tor: Update to 0.3.4.9.
...
* gnu/packages/tor.scm (tor): Update to 0.3.4.9.
2018-11-02 19:51:12 +01:00
Julien Lepiller
ff349415b2
gnu: python-apache-libcloud: Update to 2.3.0.
...
* gnu/packages/python.scm (python-apache-libcloud)
(python2-apache-libcloud): Update to 2.3.0.
2018-11-02 14:32:24 +01:00
Danny Milosavljevic
722aac1ea1
Merge remote-tracking branch 'origin/wip-rust' into master.
2018-11-02 11:01:45 +01:00
Leo Famulari
b3325eb306
gnu: Go 1.11: Avoid unnecessary store references.
...
This shrinks the closure of Go 1.11 from 1379 MiB to 581 MiB.
Fixes <https://bugs.gnu.org/32949 >.
* gnu/packages/golang.scm (go-1.11)[arguments]: Add a 'delete-extraneous-files'
phase.
2018-11-01 23:23:09 -04:00
Leo Famulari
7571ec3576
gnu: MPD: Update to 0.20.23.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.23.
2018-11-01 15:30:05 -04:00
Leo Famulari
33279c2a19
gnu: mpd-mpc: Update to 0.31.
...
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.31.
[native-inputs]: Add python-sphinx.
2018-11-01 15:30:05 -04:00
Leo Famulari
361dd8a556
gnu: icecast: Update to 2.4.4 [fixes CVE-2018-18820].
...
* gnu/packages/xiph.scm (icecast): Update to 2.4.4.
2018-11-01 12:33:14 -04:00
Rutger Helling
d7ca1899aa
gnu: mame: Update to 0.203.
...
* gnu/packages/emulators.scm (mame): Update to 0.203.
2018-11-01 09:24:52 +01:00
Rutger Helling
a769a4d432
gnu: xpra: Update to 2.4.1.
...
* gnu/packages/xorg.scm (xpra): Update to 2.4.1.
2018-11-01 08:32:45 +01:00
Rutger Helling
e7039f10ec
gnu: dolphin-emu: Use ffmpeg instead of ffmpeg@3.4.
...
* gnu/packages/emulators.scm (dolphin-emu): Use ffmpeg instead of ffmpeg@3.4.
2018-11-01 08:20:13 +01:00
Rutger Helling
ee3dd7a83a
gnu: sdl2: Update to 2.0.9.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.9.
2018-11-01 08:20:13 +01:00
Tobias Geerinckx-Rice
66a2a47117
gnu: whois: Update to 5.4.0.
...
* gnu/packages/networking.scm (whois): Update to 5.4.0.
2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice
38fda1cc36
gnu: highlight: Update to 3.47.
...
* gnu/packages/pretty-print.scm (highlight): Update to 3.47.
2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice
a72d337fbc
gnu: python-jsonrpclib-pelix: Update to 0.3.2.
...
* gnu/packages/python.scm (python-jsonrpclib-pelix): Update to 0.3.2.
[arguments]: Disable #:tests?.
2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice
60ed87871d
gnu: python-pynacl: Update to 1.3.0.
...
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.3.0.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
351a12b0a7
gnu: oniguruma: Update to 6.9.0.
...
* gnu/packages/textutils.scm (oniguruma): Update to 6.9.0.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
33bddd309c
gnu: motion: Install translations.
...
* gnu/packages/video.scm (motion)[native-inputs]: Add gettext-minimal.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
2ea678fabf
gnu: motion: Don't use unstable tarball.
...
* gnu/packages/video.scm (motion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
4fbcfc1482
Keep (gnu packages video) module imports in order.
...
* gnu/packages/video.scm (define-module): Re-order module imports
alphabetically.
2018-11-01 04:33:54 +01:00
Tobias Geerinckx-Rice
c3069cd183
gnu: motion: Update to 4.2.
...
* gnu/packages/video.scm (motion): Update to 4.2.
2018-11-01 04:32:35 +01:00
Tobias Geerinckx-Rice
2930a39b16
gnu: julia: Update objconv input to 2018-10-07.
...
* gnu/packages/julia.scm (julia)[input]: Update objconf to 2018-10-07.
2018-11-01 04:32:35 +01:00
Efraim Flashner
c16913d34d
gnu: myrepos: Update to 1.20180726.
...
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-31 21:57:02 +02:00
Leo Famulari
c438e0cc74
gnu: curl: Update grafted replacement to 7.62.0 [security fixes].
...
Fixes CVE-2018-{16839,16840,16842}.
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.62.0.
(curl-7.61.1): Replace with ...
(curl-7.62.0): ... new variable.
2018-10-31 13:54:20 -04:00
Rutger Helling
124e9d6e0a
gnu: dolphin-emu: Update to commit 22ddd11.
...
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 22ddd11.
[arguments]: Return #t with phase 'fixgcc7.
2018-10-31 10:40:04 +01:00
Rutger Helling
3126bee69a
gnu: wine-staging: Update to 3.19.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.19.
* gnu/packages/wine.scm (wine-staging): Update to 3.19.
2018-10-31 09:39:55 +01:00
Mark H Weaver
a45a92ccd8
gnu: webkitgtk@2.22: Update to 2.22.3.
...
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.3.
2018-10-31 01:47:52 -04:00
Arun Isaac
c7ac8e36e2
gnu: quaternion: Update to 0.0.9.3.
...
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.3.
[inputs]: Add qtquickcontrols, qtsvg and qttools.
[arguments]: Remove fix-libqmatrixclient-dynamic-linking phase. Add
wrap-program phase.
2018-10-31 09:31:59 +05:30
Arun Isaac
c6588749a6
gnu: libqmatrixclient: Update to 0.4.0.
...
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.4.0.
2018-10-31 09:31:59 +05:30
Tobias Geerinckx-Rice
b590951ff2
gnu: meandmyshadow: Update home page.
...
* gnu/packages/games.scm (meandmyshadow)[home-page]: Follow permanent
redirect.
2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice
1d9a9d27ae
gnu: meandmyshadow: Update to 0.5.
...
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice
4cae7e67f3
gnu: hyperrogue: Update to 10.4x.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.4x.
2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice
21fc352bad
gnu: yosys: Don't use unstable tarball.
...
* gnu/packages/fpga.scm (yosys)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice
becee7029f
gnu: disorderfs: Update to 0.5.5.
...
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.5.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
58cd3123ac
gnu: pulseview: Update to 0.4.1.
...
* gnu/packages/electronics.scm (pulseview): Update to 0.4.1.
[arguments]: Remove CMAKE_CXX_FLAGS from #:configure-flags. (Keep)
build(ing) the unit tests. Add a ‘remove-empty-doc-directory’ phase.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
61c58b7827
gnu: sigrok-cli: Update to 0.7.1.
...
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.1.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
295fc4152a
gnu: cloc: Update to 1.80.
...
* gnu/packages/code.scm (cloc): Update to 1.80.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
1204402a90
gnu: python-partd: Update to 0.3.9.
...
* gnu/packages/python.scm (python-partd): Update to 0.3.9.
2018-10-30 23:40:42 +01:00
Ricardo Wurmus
fd649d1e68
gnu: Add r-r2glmm.
...
* gnu/packages/cran.scm (r-r2glmm): New variable.
2018-10-30 22:47:35 +01:00
Ricardo Wurmus
7c02dd6268
gnu: Add r-lmertest.
...
* gnu/packages/cran.scm (r-lmertest): New variable.
2018-10-30 22:47:26 +01:00
Ricardo Wurmus
49863fd695
gnu: Add r-afex.
...
* gnu/packages/cran.scm (r-afex): New variable.
2018-10-30 22:47:18 +01:00
Ricardo Wurmus
20ff6e3a34
gnu: Add r-mvabund.
...
* gnu/packages/cran.scm (r-mvabund): New variable.
2018-10-30 22:47:10 +01:00
Ricardo Wurmus
4fb35ebd8d
gnu: Add r-rcppgsl.
...
* gnu/packages/cran.scm (r-rcppgsl): New variable.
2018-10-30 22:47:00 +01:00
Ricardo Wurmus
373cef0a0c
gnu: Add r-tweedie.
...
* gnu/packages/cran.scm (r-tweedie): New variable.
2018-10-30 22:46:47 +01:00
Ricardo Wurmus
32499b26e6
gnu: Add r-clusteval.
...
* gnu/packages/cran.scm (r-clusteval): New variable.
2018-10-30 22:13:01 +01:00
Ricardo Wurmus
7a06cdfa8c
gnu: r-analytics: Update to 3.0.
...
* gnu/packages/cran.scm (r-analytics): Update to 3.0.
[propagated-inputs]: Add r-vim.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
e5f9e9fa79
gnu: r-radiant-data: Update to 0.9.7.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7.
[propagated-inputs]: Add r-shinyfiles and r-summarytools.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
39528a5ee9
gnu: r-pracma: Update to 2.1.8.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
4633c8e6fc
gnu: r-shinydashboard: Update to 0.7.1.
...
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.1.
[propagated-inputs]: Add r-promises.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
65279cc8f3
gnu: Add r-shinyfiles.
...
* gnu/packages/web.scm (r-shinyfiles): New variable.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
a056e2251e
gnu: r-htmlwidgets: Update to 1.3.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.3.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
f697ef4a0d
gnu: r-servr: Update to 0.11.
...
* gnu/packages/web.scm (r-servr): Update to 0.11.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus
8871a51350
gnu: r-webshot: Update to 0.5.1.
...
* gnu/packages/cran.scm (r-webshot): Update to 0.5.1.
[propagated-inputs]: Add r-callr; remove r-processx and r-withr.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus
d42f741035
gnu: r-dendextend: Update to 1.9.0.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.9.0.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus
31c8d9fe00
gnu: r-emmeans: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.0.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus
bec74196ea
gnu: r-abps: Update to 0.3.
...
* gnu/packages/cran.scm (r-abps): Update to 0.3.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus
464676a970
gnu: r-proc: Update to 1.13.0.
...
* gnu/packages/cran.scm (r-proc): Update to 1.13.0.
2018-10-30 21:48:03 +01:00
Ricardo Wurmus
71d995392b
gnu: r-rdpack: Update to 0.10-1.
...
* gnu/packages/cran.scm (r-rdpack): Update to 0.10-1.
2018-10-30 21:47:54 +01:00
Ricardo Wurmus
081af9fae7
gnu: r-hdf5r: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
2018-10-30 21:47:46 +01:00
Ricardo Wurmus
08645fcff5
gnu: r-fansi: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
2018-10-30 21:47:37 +01:00
Ricardo Wurmus
7608984fe9
gnu: r-later: Update to 0.7.5.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
2018-10-30 21:47:28 +01:00
Ricardo Wurmus
80234d3294
gnu: r-maptools: Update to 0.9-4.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
2018-10-30 21:47:20 +01:00
Ricardo Wurmus
fda8dd58c2
gnu: r-shinyace: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
2018-10-30 21:47:06 +01:00
Ricardo Wurmus
02c57c018a
gnu: r-np: Update to 0.60-9.
...
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
2018-10-30 21:46:57 +01:00
Ricardo Wurmus
44de41b572
gnu: r-expm: Update to 0.999-3.
...
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
2018-10-30 21:46:48 +01:00
Ricardo Wurmus
484e81f73a
gnu: r-cubature: Update to 1.4-1.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
2018-10-30 21:46:36 +01:00
Ricardo Wurmus
905734fd7c
gnu: r-extradistr: Update to 1.8.10.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
2018-10-30 21:46:26 +01:00
Ricardo Wurmus
534bf85b9d
gnu: r-ttr: Update to 0.23-4.
...
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
2018-10-30 21:46:17 +01:00
Ricardo Wurmus
dda4ce560f
gnu: r-tinytex: Update to 0.9.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
2018-10-30 21:46:10 +01:00
Ricardo Wurmus
a8de3090d8
gnu: r-xfun: Update to 0.4.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
2018-10-30 21:46:00 +01:00
Ricardo Wurmus
8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11.
...
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
2018-10-30 21:45:51 +01:00
Ricardo Wurmus
bba80fadbe
gnu: r-magic: Update to 1.5-9.
...
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
2018-10-30 21:45:42 +01:00
Ricardo Wurmus
5621b8403b
gnu: r-sm: Update to 2.2-5.6.
...
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
2018-10-30 21:45:32 +01:00
Ricardo Wurmus
870faab4b7
gnu: r-xts: Update to 0.11-1.
...
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
2018-10-30 21:45:16 +01:00
Ricardo Wurmus
16a39c2d56
gnu: r-ggridges: Update to 0.5.1.
...
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
2018-10-30 21:45:07 +01:00
Ricardo Wurmus
9e82d6080e
gnu: r-cli: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
2018-10-30 21:44:59 +01:00
Ricardo Wurmus
2b8126a4ec
gnu: r-reshape: Update to 0.8.8.
...
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
2018-10-30 21:44:48 +01:00
Ricardo Wurmus
ecdfca05c8
gnu: r-ffbase: Update to 0.12.5.
...
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
2018-10-30 21:44:38 +01:00
Ricardo Wurmus
674c818560
gnu: r-rcpp: Update to 0.12.19.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
2018-10-30 21:44:28 +01:00
Ricardo Wurmus
0ab28e5450
gnu: r-pkgload: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
2018-10-30 21:43:38 +01:00
Ricardo Wurmus
2657e666cb
gnu: r-pkgbuild: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
2018-10-30 21:43:28 +01:00
Ricardo Wurmus
7e127ab128
gnu: r-ps: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
2018-10-30 21:43:19 +01:00
Ricardo Wurmus
b62e104b84
gnu: r-ape: Update to 5.2.
...
* gnu/packages/cran.scm (r-ape): Update to 5.2.
2018-10-30 21:43:10 +01:00
Ricardo Wurmus
1c9906c2dd
gnu: r-reprex: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
2018-10-30 21:42:59 +01:00
Ricardo Wurmus
6b451c0801
gnu: r-gprofiler: Update to 0.6.7.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
2018-10-30 21:42:48 +01:00
Ricardo Wurmus
4fc6609a0c
gnu: r-keggrest: Update to 1.20.2.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
2018-10-30 21:42:39 +01:00
Ricardo Wurmus
67cfb83ff1
gnu: r-msnbase: Update to 2.6.4.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
2018-10-30 21:42:31 +01:00
Ricardo Wurmus
807d961cc9
gnu: r-methylkit: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
2018-10-30 21:42:20 +01:00
Ricardo Wurmus
ac0166450d
gnu: r-wgcna: Update to 1.66.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
2018-10-30 21:42:09 +01:00
Ricardo Wurmus
1182460750
gnu: r-go-db: Update to 3.6.0.
...
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
2018-10-30 21:42:00 +01:00
Ricardo Wurmus
466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
2018-10-30 21:41:12 +01:00
Ricardo Wurmus
dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
2018-10-30 21:40:57 +01:00
Ricardo Wurmus
72408357fa
gnu: r-genomicranges: Update to 1.32.7.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
2018-10-30 21:40:48 +01:00
Ricardo Wurmus
9dad1957ab
gnu: r-limma: Update to 3.36.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
2018-10-30 21:40:40 +01:00
Ricardo Wurmus
57cf6a14f0
gnu: r-edger: Update to 3.22.5.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
2018-10-30 21:40:32 +01:00
Ricardo Wurmus
eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
2018-10-30 21:40:22 +01:00
Ricardo Wurmus
e563acb96b
gnu: r-iranges: Update to 2.14.12.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
2018-10-30 21:40:12 +01:00
Ricardo Wurmus
192c19f484
gnu: r-vegan: Update to 2.5-3.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
2018-10-30 21:40:00 +01:00
Ricardo Wurmus
696e1ce263
gnu: r-graph: Update to 1.58.2.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
2018-10-30 21:39:50 +01:00
Ricardo Wurmus
6ab5670aba
gnu: r-nloptr: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
2018-10-30 21:39:39 +01:00
Ricardo Wurmus
c5bd8a7c23
gnu: r-devtools: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
2018-10-30 21:39:29 +01:00
Ricardo Wurmus
aa99568639
gnu: r-evaluate: Update to 0.12.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
2018-10-30 21:39:16 +01:00
Ricardo Wurmus
60aac7ec16
gnu: r-robustbase: Update to 0.93-3.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
2018-10-30 21:39:06 +01:00
Ricardo Wurmus
16508df1d3
gnu: r-cardata: Update to 3.0-2.
...
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
2018-10-30 21:38:55 +01:00
Ricardo Wurmus
98a4b9d040
gnu: r-zoo: Update to 1.8-4.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
2018-10-30 21:38:35 +01:00
Ricardo Wurmus
834f203c07
gnu: r-tidyselect: Update to 0.2.5.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
2018-10-30 21:38:25 +01:00
Ricardo Wurmus
33fb92aacd
gnu: r-doparallel: Update to 1.0.14.
...
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
2018-10-30 21:38:16 +01:00
Ricardo Wurmus
3ea7aefd59
gnu: r-snow: Update to 0.4-3.
...
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
2018-10-30 21:38:03 +01:00
Ricardo Wurmus
62a7492c90
gnu: r-plotrix: Update to 3.7-4.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
2018-10-30 21:37:53 +01:00
Ricardo Wurmus
943cab4f72
gnu: r-rstudioapi: Update to 0.8.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
2018-10-30 21:37:35 +01:00
Ricardo Wurmus
960425c9e3
gnu: r-commonmark: Update to 1.6.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
2018-10-30 21:37:25 +01:00
Ricardo Wurmus
e028eaa992
gnu: r-coda: Update to 0.19-2.
...
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
2018-10-30 21:37:14 +01:00
Ricardo Wurmus
672ba7494b
gnu: r-data-table: Update to 1.11.8.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
2018-10-30 21:37:03 +01:00
Ricardo Wurmus
f75ee8c691
gnu: r-dplyr: Update to 0.7.7.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
2018-10-30 21:36:54 +01:00
Ricardo Wurmus
17f6198f06
gnu: r-rlang: Update to 0.3.0.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
2018-10-30 21:36:44 +01:00
Ricardo Wurmus
822863f8f9
gnu: r-r6: Update to 2.3.0.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
2018-10-30 21:36:35 +01:00
Ricardo Wurmus
3a83251c4f
gnu: r-testthat: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
2018-10-30 21:36:24 +01:00
Ricardo Wurmus
cb448dd251
gnu: r-microbenchmark: Update to 1.4-6.
...
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
2018-10-30 21:36:13 +01:00
Ricardo Wurmus
9f7438355d
gnu: r-mine: Update to 0.6.
...
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
2018-10-30 21:36:04 +01:00
Ricardo Wurmus
9413424d2d
gnu: r-ggplot2: Update to 3.1.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
2018-10-30 21:35:52 +01:00
Ricardo Wurmus
058394967c
gnu: r-digest: Update to 0.6.18.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
2018-10-30 21:35:40 +01:00
Ricardo Wurmus
b85f805090
gnu: r-mgcv: Update to 1.8-25.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
2018-10-30 21:35:26 +01:00
Ricardo Wurmus
2f5e8f6094
gnu: r-mass: Update to 7.3-51.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
2018-10-30 21:35:12 +01:00
Ricardo Wurmus
2ea75a8369
gnu: Add r-npsurv.
...
* gnu/packages/cran.scm (r-npsurv): New variable.
2018-10-30 21:35:03 +01:00
Ricardo Wurmus
7c7ee6cf4c
gnu: Add r-lsei.
...
* gnu/packages/cran.scm (r-lsei): New variable.
2018-10-30 21:34:55 +01:00
Ricardo Wurmus
74cc74e434
gnu: Add r-summarytools.
...
* gnu/packages/cran.scm (r-summarytools): New variable.
2018-10-30 21:34:45 +01:00
Ricardo Wurmus
319a80ce96
gnu: Add r-pander.
...
* gnu/packages/cran.scm (r-pander): New variable.
2018-10-30 21:34:35 +01:00
Ricardo Wurmus
9b02d1a11e
gnu: Add r-rapportools.
...
* gnu/packages/cran.scm (r-rapportools): New variable.
2018-10-30 21:34:25 +01:00
Ricardo Wurmus
5df4e27fec
gnu: Add r-rcmdcheck.
...
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
2018-10-30 21:34:15 +01:00
Ricardo Wurmus
7d8f34707a
gnu: Add r-xopen.
...
* gnu/packages/cran.scm (r-xopen): New variable.
2018-10-30 21:34:05 +01:00
Ricardo Wurmus
cbc8e6dd4a
gnu: Add r-remotes.
...
* gnu/packages/cran.scm (r-remotes): New variable.
2018-10-30 21:33:56 +01:00
Ricardo Wurmus
993426244e
gnu: Add r-sessioninfo.
...
* gnu/packages/cran.scm (r-sessioninfo): New variable.
2018-10-30 21:33:47 +01:00
Ricardo Wurmus
efefd3ec42
gnu: Add r-usethis.
...
* gnu/packages/cran.scm (r-usethis): New variable.
2018-10-30 21:33:37 +01:00
Ricardo Wurmus
153e5b2ddc
gnu: Add r-clisymbols.
...
* gnu/packages/cran.scm (r-clisymbols): New variable.
2018-10-30 21:33:25 +01:00
Ricardo Wurmus
d6871153c8
gnu: Add r-fs.
...
* gnu/packages/cran.scm (r-fs): New variable.
2018-10-30 21:33:13 +01:00
Ricardo Wurmus
21405e81e7
gnu: Add r-gh.
...
* gnu/packages/cran.scm (r-gh): New variable.
2018-10-30 21:33:00 +01:00
Ricardo Wurmus
03f8011220
gnu: Add r-ini.
...
* gnu/packages/cran.scm (r-ini): New variable.
2018-10-30 21:32:45 +01:00
Danny Milosavljevic
4df3e06210
gnu: rust: Document upstream's assessment.
...
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Add URL.
2018-10-30 20:42:04 +01:00
Danny Milosavljevic
52bc7df1a1
gnu: rust: Remove binary bootstrapper.
...
* gnu/packages/rust.scm (rust-bootstrap): Delete variable.
2018-10-30 20:42:00 +01:00
Danny Milosavljevic
44d530ef09
gnu: rust@1.23.0: Bootstrap from rust@1.22.0.
...
* gnu/packages/rust.scm (rust-1.23): Bootstrap from rust@1.22.0.
2018-10-30 20:41:55 +01:00
Danny Milosavljevic
a75b8c08c0
gnu: rust@1.23.0: Inherit from rust@1.22.0.
...
* gnu/packages/rust.scm (rust-1.23)[inherit]: Inherit from rust-1.22.
[arguments]: Inherit from rust-1.22. Delete "remove-ar" phase.
2018-10-30 20:41:50 +01:00
Danny Milosavljevic
7bf169f75c
gnu: rust: Hide "ar" entry from rust@1.21.0.
...
* gnu/packages/rust.scm (rust-1.21)[arguments]<#:phases>[remove-ar]: New
phase.
2018-10-30 20:41:45 +01:00
Danny Milosavljevic
46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums.
...
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
2018-10-30 20:20:55 +01:00
Efraim Flashner
a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments.
...
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
2018-10-30 11:15:40 +02:00
Efraim Flashner
24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4.
...
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-30 11:15:39 +02:00
Efraim Flashner
e726f0939e
gnu: mupdf: Update license list.
...
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
2018-10-30 11:15:36 +02:00
Efraim Flashner
b1435fe735
gnu: mupdf: Update to 1.14.
...
* gnu/packages/pdf.scm (mupdf): Update to 1.14.
[source]: Don't remove all the bundled libraries.
[arguments]: Add 'configure-flags to use system libraries.
2018-10-30 11:15:09 +02:00
Efraim Flashner
f8ddf719f3
gnu: mujs: Install shared library.
...
* gnu/packages/javascript.scm (mujs)[arguments]: Add custom phase to
install libmujs.so.
2018-10-30 11:03:48 +02:00
Efraim Flashner
1371e2250a
gnu: mujs: Update to 1.0.5.
...
* gnu/packages/javascript.scm (mujs): Update to 1.0.5.
2018-10-30 11:03:06 +02:00
Leo Famulari
a2717e6986
gnu: calcurse: Use HTTPS URLs.
...
Reported by Marco van Hulten <marco@hulten.org>.
* gnu/packages/calcurse.scm (calcurse)[source, home-page]: Use HTTPS URLs.
2018-10-29 20:45:57 -04:00
Leo Famulari
b4c93a78c8
gnu: xorg-server: Update to 1.20.3 [fixes CVE-2018-14665].
...
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.3.
2018-10-28 18:22:46 -04:00
Mathieu Othacehe
81f12f33b7
gnu: linux-libre: Enable BOCHS DRM support.
...
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Build DRM BOCHS support
as a module. It adds DRM support for BOCHS dispi vga interface used by
qemu (-vga std option). It will also be useful for QEMU 3.0 to enable the new
"bochs-display" display device.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
2018-10-28 20:42:50 +09:00
Efraim Flashner
852a5692bb
gnu: qt@4: Use invoke.
...
* gnu/packages/qt.scm (qt@4)[arguments]: Use invoke.
2018-10-28 09:52:46 +02:00
Efraim Flashner
1f71daf499
gnu: qt@4: Update build config.
...
* gnu/packages/qt.scm (qt@4)[arguments]: Substitute hardcoded '/bin/ls'
invocation. Add configure-flags to not build the examples or demos.
Don't use the precompiled headers.
2018-10-28 09:52:38 +02:00
Efraim Flashner
3ea61f9642
gnu: qt: Use invoke.
...
* gnu/packages/qt.scm (qt)[arguments]: Use invoke.
2018-10-28 09:52:16 +02:00
Efraim Flashner
124351efad
gnu: qt: Add vulkan support.
...
* gnu/packages/qt.scm (qt, qtbase)[native-inputs]: Add vulkan-headers.
(qt@4)[native-inputs]: Don't add vulkan-headers.
(qttools)[native-inputs]: Add vulkan-headers.
2018-10-28 09:51:56 +02:00
Efraim Flashner
d28af1991a
gnu: qt: Use system sqlite.
...
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
2018-10-28 09:51:25 +02:00
Efraim Flashner
7930cfc989
gnu: qt: Update to 5.11.2.
...
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.11.2.
2018-10-28 09:51:05 +02:00
Tobias Geerinckx-Rice
2b9b4b1fe3
gnu: hashcat-utils: Update to 1.9.
...
And trim lines to 80 characters.
* gnu/packages/password-utils.scm (hashcat-utils): Update to 1.9.
[source]: Parametrise.
2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice
2792d8a865
gnu: fzy: Update to 1.0.
...
* gnu/packages/shellutils.scm (fzy): Update to 1.0.
2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice
31b619566d
gnu: fzy: Don't use unstable tarball.
...
* gnu/packages/shellutils.scm (fzy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice
6135735b52
gnu: perl-www-mechanize: Update to 1.89.
...
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.89.
2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice
fc82538c15
gnu: perl-xml-xpath: Update to 1.44.
...
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.44.
2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice
a8b12397a1
gnu: flatbuffers: Fix typo in description.
...
* gnu/packages/serialization.scm (flatbuffers)[description]: Hyphenate.
2018-10-28 02:34:06 +01:00
Kei Kebreau
f3dd10dfe7
gnu: libmspack: Update to 0.8 [fixes CVE-2018-{18584,18585,18586}].
...
* gnu/packages/compression.scm (libmspack): Update to 0.8.
2018-10-27 20:04:20 -04:00
Ludovic Courtès
1f889cac4e
gnu: mailutils: Add dependency on GSASL.
...
* gnu/packages/mail.scm (mailutils)[inputs]: Add GSASL.
2018-10-28 01:10:55 +02:00
Ludovic Courtès
ac3b4b124f
gnu: mailutils: Install modules to …/guile/site/2.2.
...
* gnu/packages/mail.scm (mailutils)[arguments]: Pass
"--with-guile-site-dir".
2018-10-28 01:09:54 +02:00
Efraim Flashner
20a3df0fd3
gnu: mailutils: Update to 3.5.
...
* gnu/packages/mail.scm (mailutils): Update to 3.5.
[source]: Remove patch, remove snippet.
[native-inputs]: Remove flex, bison.
[inputs]: Remove guile-2.0, add guile-2.2.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-28 00:02:08 +03:00
Ricardo Wurmus
763d44920d
gnu: guile-sdl2: Update to 0.3.1.
...
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.1.
2018-10-27 20:08:50 +02:00
Mădălin Ionel Patrașcu
b509df82de
gnu: Add r-abundant.
...
* gnu/packages/cran.scm (r-abundant): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-10-27 18:54:39 +02:00
Mădălin Ionel Patrașcu
b5a310056c
gnu: Add r-quic.
...
* gnu/packages/cran.scm (r-quic): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-10-27 18:54:39 +02:00
Ricardo Wurmus
67e0fb8b49
gnu: Add xrandr-invert-colors.
...
* gnu/packages/xdisorg.scm (xrandr-invert-colors): New variable.
2018-10-27 18:54:39 +02:00
Tomáš Čech
e9a041577a
gnu: Add telegram-purple.
...
* gnu/packages/messaging.scm (telegram-purple): New variable.
* gnu/packages/patches/telegram-purple-adjust-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-10-27 16:39:29 +02:00
Ludovic Courtès
244a0d5aad
gnu: libzmf: Disable '-Werror'.
...
Fixes builds on i686-linux.
* gnu/packages/libreoffice.scm (libzmf)[arguments]: New field.
2018-10-27 16:39:29 +02:00
Pierre Neidhardt
1316413558
gnu: git: Add "subtree" output.
...
* gnu/packages/version-control.scm (git)[outputs]: Add "subtree".
2018-10-27 16:29:47 +02:00
Meiyo Peng
cbea1e8dd2
gnu: lxqt-build-tools: Define LXQT_DATA_DIR and LXQT_ETC_XDG_DIR.
...
* gnu/packages/lxqt.scm (lxqt-build-tools)[arguments]: Define LXQT_DATA_DIR
and LXQT_ETC_XDG_DIR in the configure flags.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-27 19:50:41 +08:00
Meiyo Peng
6f00fb75ca
gnu: lxqt: Correct licenses for several packages.
...
* gnu/packages/lxqt.scm (pcmanfm-qt, lximage-qt, pavucontrol-qt, qtermwidget)
(qterminal, screengrab, lxqt): Correct license to GPL2+.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-27 18:17:08 +08:00
宋文武
a46c00a3d8
gnu: lxqt: Propagate qterminal actually.
...
* gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Fix typo of 'qterminal'.
2018-10-27 11:34:57 +08:00
Tobias Geerinckx-Rice
3825b44448
gnu: xmlsec-nss: Fix tests (and hence build).
...
* gnu/packages/xml.scm (xmlsec-nss)[native-inputs]: Add nss:bin to
provide the certutil command.
2018-10-27 04:49:19 +02:00
Tobias Geerinckx-Rice
4795e5e177
gnu: units: Update to 2.18.
...
* gnu/packages/maths.scm (units): Update to 2.18.
2018-10-27 04:47:56 +02:00
Tobias Geerinckx-Rice
6d9a690927
gnu: parallel: Update to 20181022.
...
* gnu/packages/parallel.scm (parallel): Update to 20181022.
2018-10-27 04:47:19 +02:00
Tobias Geerinckx-Rice
574d877e40
gnu: gvpe: Update to 3.1.
...
* gnu/packages/vpn.scm (gvpe): Update to 3.1.
[source]: Remove obsolete snippet.
[native-inputs]: Add pkg-config.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice
b2d286545d
gnu: gama: Update to 2.01.
...
* gnu/packages/gps.scm (gama): Update to 2.01.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice
b106b78cf8
gnu: perl-x11-xcb: Update to 0.18.
...
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.18.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice
429a332b1c
gnu: flatbuffers: Update to 1.10.0.
...
* gnu/packages/serialization.scm (flatbuffers): Update to 1.10.0.
2018-10-27 04:47:18 +02:00
Eric Bavier
829785c11d
gnu: Add tnef.
...
* gnu/packages/mail.scm (tnef): New variable.
2018-10-26 21:16:42 -05:00
HiPhish
01a0a0c445
gnu: Add lua5.1-lpeg and lua5.1-lmpack.
...
* gnu/packages/lua.scm (lua5.1-lpeg): New variable.
* gnu/packages/serialization.scm (lua5.1-libmpack): New variable.
The packages lua-lpeg and lua-libmpack had no Lua 5.1 variants. These
packages will be needed to build Neovim properly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:17:00 +02:00
Pierre-Antoine Rouby
3239dcd38d
gnu: Add jp2a.
...
* gnu/packages/image.scm: New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:16:13 +02:00
Ludovic Courtès
fdf0248428
gnu: sbcl-lift: Fix 'license' field.
...
The invalid 'license' field was preventing evaluations from completing.
* gnu/packages/lisp.scm (sbcl-lift)[license]: Change to LICENSE:EXPAT.
2018-10-26 21:07:03 +02:00
Nikolai Merinov
2e2b8635b9
gnu: rust: Update to 1.28.
...
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.27): ... this.
(rust): New variable.
2018-10-26 18:11:15 +02:00
Nikolai Merinov
e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues.
...
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build. Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
2018-10-26 18:11:15 +02:00
Meiyo Peng
1fdcee026b
gnu: Add lxqt.
...
* gnu/packages/lxqt.scm (lxqt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng
a457e3f6ef
gnu: libqtxdg: Simplify configure flags.
...
* gnu/packages/lxqt.scm (libqtxdg)[arugemnts]: Use relative path for
'QTXDGX_ICONENGINEPLUGIN_INSTALL_PATH'.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng
097166dfb0
gnu: lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.
...
* gnu/packages/lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:04 +08:00
Meiyo Peng
31fd62c8ca
gnu: Add obconf-qt.
...
* gnu/packages/lxqt.scm (obconf-qt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:06:57 +08:00
Meiyo Peng
32b74b7028
gnu: Add compton-conf.
...
* gnu/packages/lxqt.scm (compton-conf): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:41:38 +08:00
Meiyo Peng
9886134cc6
gnu: Add qps.
...
* gnu/packages/lxqt.scm (qps): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:36:43 +08:00
Meiyo Peng
7e9e775f44
gnu: Add qterminal.
...
* gnu/packages/lxqt.scm (qterminal): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:31:15 +08:00
Meiyo Peng
4b88ab554c
gnu: Add screengrab.
...
* gnu/packages/lxqt.scm (screengrab): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:20:21 +08:00
Meiyo Peng
604bdae7e5
gnu: Add lximage-qt.
...
* gnu/packages/lxqt.scm (lximage-qt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:12:17 +08:00
Meiyo Peng
26127ebb97
gnu: lxqt.scm: Sort packages into base, core, etc.
...
* gnu/packages/lxqt.scm: Sort packages into base, core, etc.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:05:12 +08:00
Meiyo Peng
0aab234954
gnu: Add qtermwidget.
...
* gnu/packages/lxqt.scm (qtermwidget): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 18:54:16 +08:00
Tobias Geerinckx-Rice
21c51ebd66
gnu: hplip: Update home page.
...
* gnu/packages/cups.scm (hplip)[home-page]: Follow its permanent
redirection.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
b17004f9f9
gnu: hplip: Update to 3.18.9.
...
* gnu/packages/cups.scm (hplip): Update to 3.18.9.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
2fba511e0f
gnu: libsigrok: Update to 0.5.1.
...
* gnu/packages/electronics.scm (libsigrok): Update to 0.5.1.
[arguments]: Adjust to split udev rules and clean up a little.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
0e8e29088f
gnu: dnsmasq: Update to 2.80 [security fixes].
...
* gnu/packages/dns.scm (dnsmasq): Update to 2.80.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
e81ddedaef
gnu: tinc: Use HTTPS for sources and home page.
...
* gnu/packages/vpn.scm (tinc)[source, home-page]: Use HTTPS.
2018-10-26 02:30:51 +02:00
Leo Famulari
dea0178fb1
gnu: Mercurial: Update to 4.7.2.
...
* gnu/packages/version-control.scm (mercurial): Update to 4.7.2.
2018-10-25 20:00:27 -04:00
Meiyo Peng
84f6a9907b
gnu: Add pavucontrol-qt.
...
* gnu/packages/lxqt.scm (pavucontrol-qt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:38:57 +08:00
Meiyo Peng
8b1d43a755
gnu: Add lxqt-themes.
...
* gnu/packages/lxqt.scm (lxqt-themes): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:34:55 +08:00
Meiyo Peng
5663b5b073
gnu: Add lxqt-qtplugin.
...
* gnu/packages/lxqt.scm (lxqt-qtplugin): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:25:54 +08:00
Meiyo Peng
643961bbc6
gnu: Add lxqt-powermanagement.
...
* gnu/packages/lxqt.scm (lxqt-powermanagement): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:21:26 +08:00
Meiyo Peng
ca302c3e8c
gnu: Add lxqt-openssh-askpass.
...
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:17:16 +08:00
Meiyo Peng
bf0da63aae
gnu: Add lxqt-policykit.
...
* gnu/packages/lxqt.scm (lxqt-policykit): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng
a98000a462
gnu: Add lxqt-notificationd.
...
* gnu/packages/lxqt.scm (lxqt-notificationd): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng
f2b48558df
gnu: lxqt.scm: Move qttools from inputs to native-inputs.
...
* gnu/packages/lxqt.scm: Move qttools from inputs to native-inputs.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:13 +08:00
Meiyo Peng
35bfe41a01
gnu: Add lxqt-config.
...
* gnu/packages/lxqt.scm (lxqt-config): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 19:16:18 +08:00
Ricardo Wurmus
7b63047c94
gnu: Add r-sjplot.
...
* gnu/packages/cran.scm (r-sjplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
489a6178e6
gnu: Add r-ggeffects.
...
* gnu/packages/cran.scm (r-ggeffects): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
413944234c
gnu: Add r-glmmtmb.
...
* gnu/packages/cran.scm (r-glmmtmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
aa4bde0b3a
gnu: Add r-sjstats.
...
* gnu/packages/cran.scm (r-sjstats): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
3b8a3f5548
gnu: Add r-tmb.
...
* gnu/packages/cran.scm (r-tmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
9b3ecb60e2
gnu: Add r-bayesplot.
...
* gnu/packages/cran.scm (r-bayesplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
bd531e83d1
gnu: Add r-coin.
...
* gnu/packages/cran.scm (r-coin): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
63fcb88a50
gnu: Add r-pwr.
...
* gnu/packages/cran.scm (r-pwr): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
55a08dceb5
gnu: Add r-emmeans.
...
* gnu/packages/cran.scm (r-emmeans): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
7753b54366
gnu: Add r-multcomp.
...
* gnu/packages/cran.scm (r-multcomp): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
6ce07cf99d
gnu: Add r-th-data.
...
* gnu/packages/cran.scm (r-th-data): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
302db58552
gnu: Add r-sandwich.
...
* gnu/packages/cran.scm (r-sandwich): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
69bb2d9966
gnu: r-sjmisc: Update to 2.7.5.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus
9bf745c931
gnu: r-sjlabelled: Update to 1.0.14.
...
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14.
2018-10-25 05:17:42 +02:00
Tobias Geerinckx-Rice
9ac59ad30a
gnu: sfml: Update to 2.5.1.
...
* gnu/packages/game-development.scm (sfml): Update to 2.5.1.
2018-10-25 04:59:33 +02:00
Tobias Geerinckx-Rice
95f6adae34
gnu: sfml: Don't use unstable tarball.
...
* gnu/packages/game-development.scm (sfml)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-25 04:59:32 +02:00
Tobias Geerinckx-Rice
b865e7c254
gnu: cdogs-sdl: Update to 0.6.8.
...
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.8.
2018-10-25 04:59:29 +02:00
Ricardo Wurmus
e2ec95c4eb
gnu: Add pdfpc.
...
* gnu/packages/pdf.scm (pdfpc): New variable.
2018-10-25 01:08:09 +02:00
Tobias Geerinckx-Rice
f65fdd95df
gnu: Add hangups.
...
* gnu/packages/messaging.scm (hangups): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice
56a5ef4cb2
gnu: Add python-mechanicalsoup.
...
* gnu/packages/python-web.scm (python-mechanicalsoup)
(python2-mechanicalsoup): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice
11d99192c7
gnu: Add python-reparser.
...
* gnu/packages/python.scm (python-reparser, python2-reparser):
New public variable.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice
d4eb8a21a6
gnu: Add python-readlike.
...
* gnu/packages/python.scm (python-readlike, python2-readlike):
New public variables.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice
5b59c77585
gnu: minixml: Update to 2.12.
...
* gnu/packages/xml.scm (minixml): Update to 2.12.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice
ac9f481979
gnu: iproute2: Update to 4.19.0.
...
* gnu/packages/linux.scm (iproute): Update to 4.19.0.
2018-10-24 21:34:20 +02:00
Tobias Geerinckx-Rice
f437e39aa2
gnu: loksh: Use PREFIX.
...
* gnu/packages/shells.scm (loksh)[argumentss]: Substitute PREFIX for
DESTDIR #:make-flags.
2018-10-24 21:34:20 +02:00
Meiyo Peng
c1144c78ad
gnu: Add libkscreen.
...
* gnu/packages/kde.scm (libkscreen): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng
a6b941ddd1
gnu: lxqt.scm: Add prefix to licenses imports.
...
* gnu/packages/lxqt.scm: Import (guix licenses) with prefix "license:".
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng
34e08de321
gnu: Add lxqt-admin.
...
* gnu/packages/lxqt.scm (lxqt-admin): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00