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Author SHA1 Message Date
Ricardo Wurmus f3e16115ba
gnu: r-progeny: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.26.0.

Change-Id: Ie4aa637d7579bf5f966aa48469ee9774b9be72eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 33270b8f5b
gnu: r-rbowtie2: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.10.0.

Change-Id: Ia0479b81f8fafec85967c3f040921265672da0bc
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 11fa847d63
gnu: r-zfpkm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.26.0.

Change-Id: Iaedb6614daf04de16a4a7f1ac5d62e2a886627db
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 9932e631b4
gnu: r-zinbwave: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.26.0.

Change-Id: I0ca075c1d53c8637f096c3d5d37b8af82e913d7a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 0612b39e4a
gnu: r-webbioc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.76.0.

Change-Id: I15d7018f71115f9105ab8bcb375d0085acda5e27
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 269d807b8b
gnu: r-widgettools: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.82.0.

Change-Id: Ifbf93eaef653f353c07198d3ab492db0d48c2a5d
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 772e6bd326
gnu: r-wiggleplotr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.28.0.

Change-Id: I812e2117c9fc082e665a2d257a14d6825bd2d983
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 4290e9c021
gnu: r-wrench: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.22.0.

Change-Id: Ic5b0bc0ca63f073b121041bb3779cd6440dadf22
2024-05-08 12:53:33 +02:00
Ricardo Wurmus ee4ba2b6d7
gnu: r-wppi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.12.0.

Change-Id: Ifb378d20553d74bfca3a3311e1139f8bccc79a8b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 649def40b8
gnu: r-xcms: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.0.
[propagated-inputs]: Remove r-multtest, r-plyr, r-rann, and r-robustbase; add r-jsonlite
and r-metabocoreutils.

Change-Id: I8ebcedc2c4b7fc073589c474de8a3ea52071d278
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 218d7093e5
gnu: r-massspecwavelet: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.70.0.

Change-Id: I0c19c85365065a5918c9236b8789798edbd69431
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3d31071378
gnu: r-roar: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.40.0.

Change-Id: I86b612f9a1d4715d22a30fd6dc3c564f53400bdb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus bf13473e7f
gnu: r-yarn: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.30.0.

Change-Id: Ibc82dc44f5f1b61b5adefaee2a16de1e159ff865
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e873fea1c1
gnu: r-quantro: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.38.0.

Change-Id: Ib9b1c373c0f7820c1944d49e6cdc9e0da30c752c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 67584d7d08
gnu: r-gcrma: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.76.0.

Change-Id: I224f243340bed970d72a8186d1f286d6e87a339b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus f6f96b1e5d
gnu: r-yapsa: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.30.0.

Change-Id: Iaf62b6d599e1a7e3cd3255877a9faf9c3d8b28c1
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78ca6efb7d
gnu: r-somaticsignatures: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.40.0.

Change-Id: I599c3b6a521a93dfa056d3ea42a27906360f4e92
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3458fcb7e0
gnu: r-gtrellis: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.36.0.

Change-Id: I3d0e77d8406b71adfcce754c0df5d82fbfa54d29
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e03461e6ab
gnu: r-yamss: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.30.0.

Change-Id: Id552217ad9a7a8273e38face0f016c410b6d2f25
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 1815859a6b
gnu: r-ebimage: Update to 4.46.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.46.0.

Change-Id: I18b62127bbd91d4c443a29a376506ffb95bdf74f
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 5b0edd7546
gnu: r-aucell: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.26.0.
[propagated-inputs]: Remove r-shiny.

Change-Id: I258ef1c0dbe0b3039cccc52b45bcd279e13448eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78668dc53f
gnu: r-allelicimbalance: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.42.0.

Change-Id: I2317a273e56cec77dfc2904a9f4b394954b4452c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 69baa29212
gnu: r-annotationtools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.78.0.

Change-Id: I03cfc05951d2385d129299857ab33dca14b9a09c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus af398adbe3
gnu: r-gofuncr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.24.0.

Change-Id: I3a9519ce281638bded1674efdcedee2792653edd
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f5d18100fe
gnu: r-atacseqqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.28.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: Ie8b4dfaeb8d2dace4222edcc453206c92038ccf3
2024-05-08 12:53:32 +02:00
Ricardo Wurmus c05269694a
gnu: r-genomicscores: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.16.0.

Change-Id: I5e16fcbdb0539d1549703c5613637a45dd394f19
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00
Ricardo Wurmus b367f31127
gnu: r-motifdb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.46.0.

Change-Id: I59ea594a6f60475130842a9f1184fc2347610ca4
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f51df09015
gnu: r-rgadem: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.52.0.

Change-Id: Icb79e5feac3f3d62236ddc2a11b69cdcd41e2adb
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 6681ecd758
gnu: r-bacon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.32.0.

Change-Id: I7205d0816ada2cd36892f8c60bc51745d8bb5b3c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 4bff48490a
gnu: r-abseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.22.0.

Change-Id: I0dccf1f24b03770773e7c4bf46a290091ecf4639
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 31a2196712
gnu: r-a4: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.52.0.

Change-Id: I9d5e462c3a85085e3d4e6a6e029facb15ecc75a8
2024-05-08 12:53:32 +02:00
Ricardo Wurmus e99c0cb450
gnu: r-a4base: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.52.0.

Change-Id: Ib453338c9f5120152401b63316875563dcfa8a6f
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 316a754148
gnu: r-a4reporting: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.52.0.

Change-Id: Ibbf221deb0fe3a25832e028d4428daca86638aae
2024-05-08 12:53:32 +02:00
Ricardo Wurmus fe2386ed67
gnu: r-a4preproc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.52.0.

Change-Id: If57e045b95a93fc6f3219563c14cb75d8b7def09
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f76b77319c
gnu: r-a4classif: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.52.0.

Change-Id: I80ac898550980c35b035fdb1d9830107eef81fbe
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 2de96b1cac
gnu: r-a4core: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.52.0.

Change-Id: Ic773aab10e8d25897b3d656ef97302ccc6c4e585
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 42069fa4f3
gnu: r-annaffy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.76.0.

Change-Id: Id4e02486fc59d4a1522d2a5ad4bdcb952656bb35
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 863e4f3fad
gnu: r-mlinterfaces: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.84.0.

Change-Id: I92ed0cc7b971ac04eac715d47031ce2dcee1fd65
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 38a5a2ee34
gnu: r-clusterexperiment: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.24.0.
[propagated-inputs]: Remove r-howmany.

Change-Id: Ibd0ea9c9ea87c3eddc86b6d7e13198575cc10418
2024-05-08 12:53:32 +02:00
Ricardo Wurmus d4eec5ad55
gnu: r-clusterprofiler: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.0.

Change-Id: If7fcff996d1c7341bb9e9faa0499dd259e894afc
2024-05-08 12:53:32 +02:00
Ricardo Wurmus de0f76d329
gnu: r-enrichplot: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.24.0.

Change-Id: Ide2c42c7df2f76742242df9191b51e56b4bcfc20
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a1f70d410a
gnu: r-enrichedheatmap: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.34.0.

Change-Id: I08fa610c96dd70460daf90f1a55adfe14119c12a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0806704ab3
gnu: r-dose: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.0.

Change-Id: I28254605db5026df5624ff6495dbeb294624a210
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 233ed5688e
gnu: r-fgsea: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.30.0.

Change-Id: Ib82a7b868f39594f0b2211a892596d638a5805d0
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 9c78531a2a
gnu: r-fcscan: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.18.0.

Change-Id: Iaa8325f526e06c25775421023d9f05ede76a54a3
2024-05-08 12:53:31 +02:00
Ricardo Wurmus e82b89a306
gnu: r-anota2seq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.26.0.

Change-Id: I9cfa5e25e1b0d7c1b0ae86b3d3d99c836579f3dc
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 3187bbde7b
gnu: r-anota: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.52.0.

Change-Id: I31b0c1073f1b00b3b5d37cf7660edfd0660e4510
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0e31943e5e
gnu: r-gosemsim: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.0.

Change-Id: I68681741553872d7928d8ef6388d9cecfb67c98f
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f8ac2124cb
gnu: r-heatplus: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.12.0.

Change-Id: Ib77fe8736bcd1a2e893de81afe77b66fd9a6d730
2024-05-08 12:53:31 +02:00
Ricardo Wurmus db03970daf
gnu: r-varianttools: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.46.0.

Change-Id: Icd4ad4878d0bcd47f14fae911adae373dbcabe90
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5fee991a00
gnu: r-tradeseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.18.0.

Change-Id: Ifb79112bed8aed760a3c100894f42554ed363e42
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 61bcb44396
gnu: r-ioniser: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.28.0.

Change-Id: Iae0b93ca195793240e5e5e9202685207868636f9
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5180609ccf
gnu: r-linnorm: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.28.0.

Change-Id: Iaead2fd1bb4044ceccb9192f4fefb014f9a6c08b
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 7c84c1d56b
gnu: r-lumi: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.56.0.

Change-Id: I99c34bf0c24123b0be4580b3d2211c55690fa248
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 2181f4cfb6
gnu: r-lefser: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.

Change-Id: Ife3994b119fe09ae9c1cf7b6604fd20aea59332a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 8ae01e0e56
gnu: r-methylumi: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.50.0.

Change-Id: I05ada9bb2d21c34f0d89b45efd3aca05c7e4bd55
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 16704ec29d
gnu: r-missmethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.38.0.

Change-Id: I525d9a3697b621b6f9e9eb09830950653ff571a4
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f71b4cc8c4
gnu: r-minfi: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.50.0.

Change-Id: I998622a5e1e7591819c18615c69784178710b168
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 339681b5c7
gnu: r-milor: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.0.0.
[propagated-inputs]: Add r-matrixgenerics, r-numderiv, r-rcpp, and r-rcpparmadillo.

Change-Id: I5d228959211ba4cdfbd6e8786f5fa801fdb38795
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 37ec72581f
gnu: r-microbiome: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.26.0.

Change-Id: I8ff4db42954af3dbf118f58838cae12c54998fa5
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 6040bcf1d5
gnu: r-mia: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.12.0.

Change-Id: I916224f840fe4f64b3307d09ca2bc00d18b2dcbf
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 32854c58f9
gnu: r-bumpymatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.12.0.

Change-Id: I87baf5a3ad2909cb927d363dd3a379487cc596fd
2024-05-08 12:53:31 +02:00
Ricardo Wurmus c990a72c67
gnu: r-bumphunter: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.46.0.

Change-Id: I171983cd2e64539fcd2d8f9a07421ff2418382f2
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f24b16fa41
gnu: r-siggenes: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.78.0.

Change-Id: I3b25af173de02555d4be229fb5f10ec03ee81298
2024-05-08 12:53:31 +02:00
Ricardo Wurmus cb38250d1d
gnu: r-illuminaio: Update to 0.46.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.46.0.

Change-Id: I5c7a518114f64ae05daec56467a30076313b1bb2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus f439044038
gnu: r-geoquery: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.72.0.

Change-Id: I8042f082559a8215013f18ebfbb44b019b40c8d6
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 9ec23ccb00
gnu: r-scone: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.28.0.

Change-Id: I94c44dd6323d6ae93e91ef6fadd12de66af4c3b0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 8fc95f20db
gnu: r-scdd: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.28.0.

Change-Id: I42916e2eb192bbb1f24d039eb07d20f066887c3e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus b0499b5e7f
gnu: r-noiseq: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.48.0.

Change-Id: I2e8160ba86fadcbe804b2690977e993e6ebdb433
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 986711225a
gnu: r-sangerseqr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I8b140d95d6de99a334372116e81c13b28816a5cb
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 617d87d764
gnu: r-monocle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.32.0.

Change-Id: I44260b60dc8faea338177ffbd190efa619be4bf0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 6f44c3769a
gnu: r-mast: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.30.0.

Change-Id: Ifed0788bf9e12d4b658493a345b66d66642cb508
2024-05-08 12:53:30 +02:00
Ricardo Wurmus bd79bfd298
gnu: r-batchelor: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.20.0.

Change-Id: I2b481fbf2d0f519782afb1338ff62b793f48b02b
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 851bebc7bd
gnu: r-residualmatrix: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.0.

Change-Id: I868b4a1c8543baf517eb7bdef1be52d854213749
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 427f9232e1
gnu: r-icobra: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.32.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I00098c395e56dd476d7eee1bd5f69e25b1311799
2024-05-08 12:53:30 +02:00
Ricardo Wurmus fcfa770494
gnu: r-ihw: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.32.0.

Change-Id: Id002b977b421c761f0b5776700283e71f937a04e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus ce4f5ee13f
gnu: r-lpsymphony: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.32.0.

Change-Id: Ia032fb628cc3a70176f5b34c4d448f0993466200
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 12d37b0c57
gnu: r-karyoploter: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.30.0.

Change-Id: Ie63e8e9a5945d99354d6f98248cddb4fcb0d9655
2024-05-08 12:53:30 +02:00
Ricardo Wurmus bf52c2a0e9
gnu: r-ebseq: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.2.0.

Change-Id: Id136b108abe6d3ee372d08f4a6d6e03f7c285c71
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 81d3077cc7
gnu: r-dnacopy: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.78.0.

Change-Id: Id303aec39ec0b2f2d532267301151fea2e9bf4c7
2024-05-08 12:53:30 +02:00
Ricardo Wurmus fc71927c70
gnu: r-chipexoqual: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.28.0.

Change-Id: I0cf774225c8cf595cb28e8775ba16eadc2604d63
2024-05-08 12:53:30 +02:00
Ricardo Wurmus f223fd6e70
gnu: r-destiny: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.18.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I94f4f6b317b300f3abb91520cfece0791c45bba2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 3a80eb8171
gnu: r-biocsingular: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.20.0.

Change-Id: If23353503d25e3e9b9333b55092360c4dcd02931
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 0f9edc8535
gnu: r-metapod: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.12.0.

Change-Id: I82e4487b9495f94b224fac47d0b86bfe49de7438
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 2d5e861383
gnu: r-ggtree: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.12.0.

Change-Id: Id0230ecfd45c9a02ef1076a603409512ae9cab04
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 0578399109
gnu: r-treesummarizedexperiment: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.12.0.

Change-Id: I3e541e10d3331a79c1b5eed6df49b07ad31694fd
2024-05-08 12:53:30 +02:00
Ricardo Wurmus a5a48afd52
gnu: r-treeio: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.28.0.
[propagated-inputs]: Add r-yulab-utils.

Change-Id: Icbb80a1fb2a5f1b1a9c0f38fdd92a9af22fafa58
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 5a7511551c
gnu: r-scaledmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.12.0.

Change-Id: I886c3f2c39a9385a6a1546fd5aacb14b2e744c69
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 6c9dbaa1f0
gnu: r-biocneighbors: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.22.0.

Change-Id: Idef84694ed38033d5aa211a51c83e96d61e000c1
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 6d03ea0bf3
gnu: r-ruvseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.38.0.

Change-Id: I20cd79c28c77979213dde9e298b78bd200686bc5
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 4e1e996469
gnu: r-dnabarcodes: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.34.0.

Change-Id: I19ec9fa1eb4d2a205ce0ef3f0925e42db11fe0d7
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 83bbfba994
gnu: r-inspect: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.34.0.

Change-Id: I4e5ba976f557f06bbfd0a2c4834a18a9f5c39641
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 5452fb5042
gnu: r-plyranges: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.24.0.

Change-Id: I99a8d90d6286e1d1fc3ec2ee02fa11d327bd49d0
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 48e8e177c4
gnu: r-plgem: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.76.0.

Change-Id: Ie827507d649f0eb5e9ccf7ed7c7ae6836284262f
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 7f22e3693b
gnu: r-rots: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.32.0.

Change-Id: Iff0ed11cedadfc65e20cc5d39a4262e7974de2db
2024-05-08 12:53:29 +02:00
Ricardo Wurmus a4edee3e48
gnu: r-glmgampoi: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.16.0.

Change-Id: I2bf8dfb35cb318b146cbe5ff0746fff50cff5245
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 3456d23e24
gnu: r-glimma: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.14.0.

Change-Id: I6c6d182612f065abca75dfc34db0c0a330d1c673
2024-05-08 12:53:29 +02:00
Ricardo Wurmus d3bef5339c
gnu: r-ctc: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.78.0.

Change-Id: I80cc97542cd21358b0037103d237b7beaf369a41
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 8938e52e40
gnu: r-genomicinteractions: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.38.0.

Change-Id: Ib21a06dcd29cb365ac892a4acddc3d4ac849a82a
2024-05-08 12:53:29 +02:00
Ricardo Wurmus b1f4794ea4
gnu: r-interactionset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.32.0.

Change-Id: Ic463139eb4d1b528b945c82854ea6d170ff6d5d0
2024-05-08 12:53:29 +02:00
Ricardo Wurmus a1197f2e69
gnu: r-riboseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.38.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I3db5790e20901be4e17e80d17e4e32a4185d4e06
2024-05-08 12:53:29 +02:00
Ricardo Wurmus a1e7f331a2
gnu: r-riboprofiling: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.34.0.

Change-Id: I93cf780c9e31684f976c5b4d9a5e207d3f3fcd4d
2024-05-08 12:53:29 +02:00
Ricardo Wurmus ee42719f25
gnu: r-chipcomp: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.34.0.

Change-Id: Ib25d9e41d6378d60328a8461f379a19d87615cd5
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 2eac018b3b
gnu: r-bayseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.38.0.

Change-Id: I06fe6bb886c0a8c52f96ae021987e221a4cfd73d
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 6cf5506514
gnu: r-qdnaseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.40.0.

Change-Id: I15030171a4e2eafa324131fe29800c3004b1c3b3
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 10cba6e840
gnu: r-cghcall: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.66.0.

Change-Id: I14bced655bea4c34d9d97ffafdf7435c5bab9d91
2024-05-08 12:53:29 +02:00
Ricardo Wurmus edabbba1a5
gnu: r-cghbase: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.64.0.

Change-Id: I0a2dc81941c373e7f8d4ecefc196aadf5a2375cd
2024-05-08 12:53:29 +02:00
Ricardo Wurmus c4e5ed070a
gnu: r-marray: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.82.0.

Change-Id: I5e89a79a53539ffbc503ba08f3f14b4baba14c97
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 8f4d63e09b
gnu: r-matrixgenerics: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.16.0.

Change-Id: I123ac9451ff9a71027c3d2ebd6cb74baf2a2b70e
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 26bcd09be5
gnu: r-chippeakanno: Update to 3.38.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.38.0.
[propagated-inputs]: Add r-data-table, r-pwalign, r-scales, r-stringr, r-tibble, r-tidyr,
and r-universalmotif.

Change-Id: If1a8bd01cf741f7eaca1a70abbcf438ce09967f3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus e8978ca774
gnu: r-pepsnmr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.22.0.

Change-Id: I4a24be4f4e27f597abcdf2bc12038148ce944725
2024-05-08 12:53:28 +02:00
Ricardo Wurmus be96c69430
gnu: r-ggtreeextra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.14.0.

Change-Id: I2eae5f5d3bc4e3aeb4f4a5dfc9d62382c8eced3a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus b85c1852b6
gnu: r-graph: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.82.0.

Change-Id: Ia146b27aff043a4726fe740ca525e9b54fe14d6d
2024-05-08 12:53:28 +02:00
Ricardo Wurmus a6b86197f1
gnu: r-multtest: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.60.0.

Change-Id: I62f4002526c565e117947ff790e217012e55aac3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 4d6e9dca31
gnu: r-multibac: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.14.0.

Change-Id: Ia10f5477a6dc12d43577b80c66140fc8f3954da4
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 962f125a58
gnu: r-mbkmeans: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.20.0.

Change-Id: Ia6d03cd59abdbe1fe407ccccc658d2b88c8ace0c
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 0e592e5d44
gnu: r-mbecs: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.8.0.

Change-Id: I4bda3ad7f6e1635c51effed99b079bac494f3e0b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus f48ef2b2be
gnu: r-diffbind: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.14.0.

Change-Id: Ibc1d511db31e2d3db6c44d1fcd992ad291a57c7e
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 65d1491d69
gnu: r-greylistchip: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.36.0.

Change-Id: If072acdcf878e86c95f1f66a13b899cfc9adc2b7
2024-05-08 12:53:28 +02:00
Ricardo Wurmus aaac3ebdc8
gnu: r-apeglm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.26.0.

Change-Id: I6f6770c0f45287baae74300422795c40a7fb9485
2024-05-08 12:53:28 +02:00
Ricardo Wurmus aa265d655b
gnu: r-apcomplex: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.70.0.

Change-Id: Ic8641d7e20d1db3fb101807e27eb908d3da47d7b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 8db1cd28aa
gnu: r-qvalue: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.36.0.

Change-Id: I571e437c7f3d16d616ef45a9b89dd8a21b3f4951
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 63f3f86f03
gnu: r-quantsmooth: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.70.0.

Change-Id: I030e55293e73ab143dc542e9de0f5b33acc1ce11
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 1ca2afaef6
gnu: r-qfeatures: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.14.0.
[propagated-inputs]: Add r-tidyr and r-tidyselect.

Change-Id: I3adff30be5528c7a14f8895baaeadbac9a403630
2024-05-08 12:53:28 +02:00
Ricardo Wurmus e9dab24f53
gnu: r-oligo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.68.0.

Change-Id: I13c81497f607deaea44d258513fe797147b33d1b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 21c3f68c29
gnu: r-oligoclasses: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.66.0.

Change-Id: Ic0ab82b4e1e6e400d6b78bc1fc743b72ffe8fb5a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 2832730fce
gnu: r-geneplotter: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.82.0.

Change-Id: I0fe3974fc5db878ca316eec339e29d669d80cfa3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus b877e13cb0
gnu: r-zellkonverter: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.14.0.

Change-Id: Id3ae955b285c16c11f3e8ffb13d46f73c75c8d28
2024-05-08 12:53:28 +02:00
Ricardo Wurmus c0f07c73fd
gnu: r-zlibbioc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.50.0.

Change-Id: I9328dc1aac9f1a9818eb2d3db535443357fbdb96
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 61ff644dbc
gnu: r-xvector: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.44.0.

Change-Id: I0fc1b77f6713dd21c880a8dc3560538f3dd64f2a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 09d56eba55
gnu: r-xmapbridge: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.62.0.

Change-Id: I47d9cd20a6a11ecd83d51737766ea528f27cea5b
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e883e06151
gnu: r-xina: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.22.0.

Change-Id: I6c6678b36e138132be262a79fd026e5c3b5a8025
2024-05-08 12:53:27 +02:00
Ricardo Wurmus b1d1af4ae6
gnu: r-vsn: Update to 3.72.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.72.0.

Change-Id: I0ffe22d61eb7e8395873701dc993e1bb4da01ea0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 017232eb6c
gnu: r-variantannotation: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.50.0.

Change-Id: I9cc7974bbf682e85b8813f10e5351bd97c6541fe
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 6e8ce08d51
gnu: r-tximport: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.32.0.

Change-Id: Ie592907eda6aeaecedacfab5ab46b6083c079c10
2024-05-08 12:53:27 +02:00
Ricardo Wurmus bf1b1e3a1c
gnu: r-topgo: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.56.0.

Change-Id: I092b5d3592e05fef80b04866fac8a40ccea258fd
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 16a794f8ed
gnu: r-systempiper: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.10.0.

Change-Id: I5a58172e4a622d132430a6332d95c1547f60a178
2024-05-08 12:53:27 +02:00
Ricardo Wurmus d739f83b6b
gnu: r-sva: Update to 3.52.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.52.0.

Change-Id: Ib4243cc0d61a98703e2abf35fafa761a1c465f21
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 118aff2e0e
gnu: r-survcomp: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.54.0.

Change-Id: I4d4e7523d555484d1fef46622d968c4ea4206fa7
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 65973abaf1
gnu: r-summarizedexperiment: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.34.0.

Change-Id: Ia321ab98a3ef414687556e5c81f82891fce8ff27
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e6522075ec
gnu: r-structuralvariantannotation: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.20.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If835644b8f25b491953270d4de43bc52295c6a1d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 7f5b5e9b11
gnu: r-structstrings: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structstrings): Update to 1.20.0.

Change-Id: Idd71d968a31bb85fac334a635c0084bfadb569c3
2024-05-08 12:53:27 +02:00
Ricardo Wurmus ba92e738d3
gnu: r-stringdb: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.0.

Change-Id: I8ab6ff63f94f4d6e9c8b9bfa7b8017030a55bfef
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e13e3edd17
gnu: r-stager: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.26.0.

Change-Id: Ie5eab32c083443149be319d92d8025aea9b00fb4
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 11d71e1831
gnu: r-spectra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.0.

Change-Id: I473834e66f7d6a2721a71bafe17b1b3797f469c0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus a23a4ca88e
gnu: r-slingshot: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.12.0.

Change-Id: Ic7cdd2989054686a0e204c1a7c5f824241395506
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 30ddcaad69
gnu: r-scds: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.20.0.

Change-Id: I1b2a63d6110e84f2afa0814e63d7d51ce7b60cf9
2024-05-08 12:53:27 +02:00
Ricardo Wurmus f8940f24c6
gnu: r-trnadbimport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trnadbimport): Update to 1.22.0.

Change-Id: I0414b8517d6fb685b031b0f4db9a1d12887f1b96
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 0f1d300f88
gnu: r-trna: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trna): Update to 1.22.0.

Change-Id: I8963719a1115e1c5ee4994e41a1aa54bc22fcaad
2024-05-08 12:53:27 +02:00
Ricardo Wurmus cda28c3a25
gnu: r-trajectoryutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.12.0.

Change-Id: I34fe4ddcfefbc5e630b980a1f5efa95651b57d4d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 13510c9f98
gnu: r-transcriptr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.32.0.

Change-Id: Ia667543961c1512ada20fe9c52e3e7ed09d0f65e
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 014cb61aec
gnu: r-trackviewer: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.40.0.
[propagated-inputs]: Remove r-graph and r-rgraphviz; add r-igraph and r-txdbmaker.

Change-Id: I90fbb82ff3261d78d5a34398319032f18068fe6a
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e5db1eda48
gnu: r-toast: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-toast): Update to 1.18.0.

Change-Id: Id9859f9e2cdb7ca883851dfe6898d1303a352a38
2024-05-08 12:53:27 +02:00
Ricardo Wurmus aba6649da3
gnu: r-tkwidgets: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.82.0.

Change-Id: I8651a8b1266c181aac615895c9f39380f0351057
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 643ef0df61
gnu: r-tcgautils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.24.0.

Change-Id: Ie461dd5c2e2799c6cd32cc5e88a13337bcf82096
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d77e1f3c10
gnu: r-singscore: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.24.0.

Change-Id: I8e7b85d05a7e9f7d4e724dc5de30cdab5dc23e57
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 6f901f6078
gnu: r-simplifyenrichment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.14.0.

Change-Id: Ie857137bb1320f3720b005a3f85b9af5b91f921e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 1140cfd70c
gnu: r-sictools: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sictools): Update to 1.34.0.

Change-Id: I99b7c71edd1eb82ee8b2430de49559713b7b190a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 04949bab4a
gnu: r-shortread: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.62.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If2d4d238f239f2acda2f8bffc29851dbfa5e6242
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 3919266295
gnu: r-shinymethyl: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.40.0.

Change-Id: Ifb3c81587b465500bc09e05da2d3dc8f0ca360b5
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 19da768a9f
gnu: r-sesame: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.0.

Change-Id: I0efac0bf86ee98a8e75fc27c4deebeeb3b285501
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 18b93942a1
gnu: r-seqpattern: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.36.0.

Change-Id: I34fdeb5b2c758a61d3c51b661c3f368962041a7b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 28ec187b57
gnu: r-seqlogo: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.70.0.

Change-Id: I201297ab8f83e29de02014ec4e714ea9660a9f7d
2024-05-08 12:53:26 +02:00
Ricardo Wurmus c85aa7b104
gnu: r-seqarray: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.44.0.

Change-Id: I056ebc6080d3a2d82c2f1a2ffcc45d5c6bfdbb9e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus a1b6df6cf7
gnu: r-scry: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.16.0.

Change-Id: I47c4da2763a994a1763eca403597b41b4514852e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 5ac1127f4a
gnu: r-scrnaseq: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.18.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-sce, r-dbi,
r-delayedarray, r-gypsum, r-jsonlite, r-matrix, r-rsqlite, and
r-sparsearray.

Change-Id: Ib72ccf01386df1bc464bea2922e4539968b97805
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d4094eaef4
gnu: r-screpertoire: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.0.0.
[propagated-inputs]: Remove r-doparallel, r-powertcr, and r-vegan; add r-cubature,
r-evmix, r-ggdendro, r-hash, r-inext, r-quantreg, r-rcpp, r-rjson,
r-s4vectors, r-truncdist, and r-vgam.

Change-Id: I0d2647f9d2cee66503e0d76f4ff913fd5662971c
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 0ddc2665e0
gnu: r-scmap: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.26.0.

Change-Id: I8ca259c16274a11e5767e3d652394144418cb91b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 23dd82f6d0
gnu: r-scdblfinder: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.18.0.

Change-Id: Id0180b229c58d25c67ab45725714a07ced6a4f69
2024-05-08 12:53:26 +02:00
Ricardo Wurmus b8959272c5
gnu: r-scannotatr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.10.0.

Change-Id: I3f13f54e33f1d615ef234853c425894239031399
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 51093471ce
gnu: r-saturn: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.12.0.

Change-Id: I187d36aa6b0a29a12c738e4e1c36c12905d3bbd9
2024-05-08 12:53:26 +02:00
Ricardo Wurmus dae9e19df4
gnu: r-rtracklayer: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.64.0.
[inputs]: Add curl.
[propagated-inputs]: Remove r-rcurl; add r-curl and r-httr.

Change-Id: I1d5f33e9feb54fa0ce6e8d7b98fca461e8480c06
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 43cced246b
gnu: r-rtcgatoolbox: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.34.0.

Change-Id: I4d1c6d5f1d6dffe4cd5acf074c86eae1e008a44b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 92ed002d7f
gnu: r-rtcga: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.34.0.

Change-Id: I84fa90b4e055fbce4415f25d9638b7579c73eda8
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d27d69bd4b
gnu: r-rsamtools: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.20.0.

Change-Id: I3ac6535dc9dec0530df1ff5f5552539bd7345c2a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 27f6990d05
gnu: r-rhdf5filters: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.16.0.

Change-Id: I8730bd79c8f560ff792ad81d34f07f9e28f114e8
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 2871646f25
gnu: r-rhdf5: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.48.0.
[propagated-inputs]: Remove r-s4vectors.

Change-Id: I106a2b526f6baad8b2ccfa2f0376dc1de6f39598
2024-05-08 12:53:25 +02:00
Ricardo Wurmus b5c64bf298
gnu: r-reportingtools: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.44.0.

Change-Id: I18c2701eeefd845562b5d0f26a4bdcb847f9aaeb
2024-05-08 12:53:25 +02:00
Ricardo Wurmus f266dc542f
gnu: r-regioner: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.36.0.

Change-Id: I6eb3497c259eb291094fcc18e1e1f2b0d439d483
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 610170b467
gnu: r-rcy3: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.24.0.

Change-Id: I73d35d39e215d2f2bca53be25efd9e30279cfb43
2024-05-08 12:53:25 +02:00
Ricardo Wurmus e13f15ad19
gnu: r-rcas: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.30.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I4c941340d3f31478744c0fedd36ad171e9fe1170
2024-05-08 12:53:25 +02:00
Ricardo Wurmus b31da9257b
gnu: r-rbgl: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.80.0.

Change-Id: I73f6c60bd442c6a660406bbc00929784731e7b77
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 9529783d05
gnu: r-protgenerics: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.36.0.

Change-Id: I6742405e19ef294b39bd5e52d200ac6439656692
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 2cdc26b06b
gnu: r-protgear: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-protgear): Update to 1.8.0.

Change-Id: Ib25dc0ffb76e81a17b95cd3ace591dea8cca3381
2024-05-08 12:53:25 +02:00
Ricardo Wurmus f433fb7a41
gnu: r-powertcr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-powertcr): Update to 1.24.0.

Change-Id: Id89108c25415b044535a8f97d8652e9421f0c244
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 973e3b930b
gnu: r-polyester: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-polyester): Update to 1.39.0.

Change-Id: I9459129d18e6ad150a64c630dfc66827ff66d2b0
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 884574d5f4
gnu: r-piano: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.20.0.

Change-Id: I172d499e19af64eedd5a1a6a224c0e3712607804
2024-05-08 12:53:25 +02:00
Ricardo Wurmus c112c15aa4
gnu: r-pfamanalyzer: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.4.0.

Change-Id: I43cc527998df850b53d3f9ab50dabc528df4f966
2024-05-08 12:53:25 +02:00
Ricardo Wurmus c7f7ce8c9d
gnu: r-pcamethods: Update to 1.96.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.96.0.

Change-Id: I6443fc5882c1ea7b24580802a6463de3928ded05
2024-05-08 12:53:25 +02:00
Ricardo Wurmus cc2d111ba5
gnu: r-pcaexplorer: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.30.0.

Change-Id: I86c2dc6da62836bcf896f1806379aeaccd0acd8a
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 60287e583e
gnu: r-oscope: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.34.0.

Change-Id: I76719b29a735b50e86c5264a3a515da7607f36a0
2024-05-08 12:53:25 +02:00
Ricardo Wurmus d7fd4fc3e5
gnu: r-organismdbi: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.46.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: If4bfdc334732ee3cd3c2d7cf3891b3c1c421b2f5
2024-05-08 12:53:25 +02:00
Ricardo Wurmus d0ca4e40f1
gnu: r-organism-dplyr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.32.0.

Change-Id: If97310018f8ce54fbf5ea8cd1fdb8ee25d6a9315
2024-05-08 12:53:25 +02:00
Ricardo Wurmus a0c5170668
gnu: r-mzr: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.38.0.

Change-Id: Ia7208452ea50f9864c0285b5da0632e5cf32bbae
2024-05-08 12:53:25 +02:00
Ricardo Wurmus c049e9663d
gnu: r-mzid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.42.0.

Change-Id: I7a810fb9ee71910a1ca7dad6aacf570f50ab408e
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 58bb51e074
gnu: r-msnid: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.38.0.

Change-Id: Ic42c4c0383c09e6f5cecb50d8a7f1f69b6334307
2024-05-08 12:53:25 +02:00
Ricardo Wurmus b1fb666896
gnu: r-msnbase: Update to 2.30.1.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.30.1.
[propagated-inputs]: Remove r-xml; add r-psmatch.

Change-Id: Ief36282f6d24273d64cd2408f1e81281d7a1208c
2024-05-08 12:53:25 +02:00
Ricardo Wurmus f39bb85461
gnu: r-msa: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.36.0.

Change-Id: I5c2303570cbdb31c87485bbb8a38aaf5ca902364
2024-05-08 12:53:25 +02:00
Ricardo Wurmus a249750984
gnu: r-mutationalpatterns: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.14.0.

Change-Id: I157e2820d25d629a15247dbeffdff9026f164eab
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 175da97b80
gnu: r-muscat: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.18.0.

Change-Id: I4615d459a867a26f296d0d4ab8f3a24ecac36bc5
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 16a2fd2158
gnu: r-modstrings: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-modstrings): Update to 1.20.0.

Change-Id: Ibd73b4256e9b13f8276aa0018e0d6c93cfc88aa8
2024-05-08 12:53:24 +02:00
Ricardo Wurmus b7419a5ff5
gnu: r-mmuphin: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.18.0.

Change-Id: I71b37e4f6a5393cd7b350fefa169fdf50c055673
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 0f31eb0546
gnu: r-mfuzz: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.64.0.

Change-Id: Idaffd1df4a9a48181cb724d69eac26cd4fe6fdc6
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 90025fcdd9
gnu: r-methylkit: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.30.0.

Change-Id: I0004c3878192ac3ca5e7671c8cdd475214dcdf1e
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 5243f41783
gnu: r-methylaid: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-methylaid): Update to 1.38.0.

Change-Id: I7313f0d99c9a7089fe39aae2798d990eca991583
2024-05-08 12:53:24 +02:00
Ricardo Wurmus f1bb1608b7
gnu: r-metaneighbor: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.24.0.

Change-Id: I96685ea4835b1a0f4e7683c875a90deb68909c47
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 48020fd3ad
gnu: r-metagenomeseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.46.0.

Change-Id: Ie55a3af0fd2fb3389aa79eee67425997be6037c9
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 983174d9ac
gnu: r-metabocoreutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.12.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: I813eb21649c200a04e71b0f8831765f8f419fbb1
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 9123f8a7e9
gnu: r-mdqc: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.66.0.

Change-Id: I1b37db994acc66091cb79f08015ae938a1220a0d
2024-05-08 12:53:24 +02:00
Ricardo Wurmus b8e2f249b2
gnu: r-maser: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.22.0.

Change-Id: I88e64d3571fd105d9c52160570ba121db7d7a741
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 331d6c7d3a
gnu: r-manor: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.76.0.

Change-Id: I7d9cb874f02dc0154f3a79e086af9afd9b286271
2024-05-08 12:53:24 +02:00
Ricardo Wurmus c5c343a7c3
gnu: r-makecdfenv: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.80.0.

Change-Id: I8efc1851412352c5b3fc194a7343c910cde7e0dd
2024-05-08 12:53:24 +02:00
Ricardo Wurmus c268d433b8
gnu: r-made4: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.78.0.

Change-Id: Ifd79c7a15515466d14d088ae45775d11e7e3b36b
2024-05-08 12:53:24 +02:00
Ricardo Wurmus d8b6bb9707
gnu: r-maaslin2: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.18.0.

Change-Id: I73d0c755e83fd7c3da4e3198884a708cc1c0b3bf
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 3217303d2d
gnu: r-limma: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.60.0.

Change-Id: I55142eccce0230fa8f96ff88948fd68ab2d67bdc
2024-05-08 12:53:24 +02:00
Ricardo Wurmus d9159c5bf7
gnu: r-lfa: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.4.0.

Change-Id: I249d9c6e24a30ea6b214afe5d48289184ada132a
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 62c868854c
gnu: r-lea: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.16.0.

Change-Id: Id74077d5fbcee1c01df06e56f60efe3b75ad6be8
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 7d732b0a0e
gnu: r-keggrest: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.44.0.

Change-Id: I09a55fb30b482cadc9fedd8e2e2b703c8d9f4cb4
2024-05-08 12:53:24 +02:00
Ricardo Wurmus f7e6c6592b
gnu: r-interactivedisplaybase: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.42.0.

Change-Id: I403f2554ae1312fc12388d0c291ba727d9825e1d
2024-05-08 12:53:24 +02:00
Ricardo Wurmus af492d1f48
gnu: r-interactivedisplay: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.42.0.

Change-Id: Id8afe194c00e3c17e2953027ae167bb924245ceb
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 7e49068c5d
gnu: r-impute: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.78.0.

Change-Id: I53c06ca20ec8553294cc44af527181f6e03b39b8
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 822b15d310
gnu: r-rnbeads: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-rnbeads): Update to 2.22.0.

Change-Id: I2b368fb296a05e0e4f0c7dd634d07203580b409b
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 2c1a7b4ee3
gnu: r-rhtslib: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 3.0.0.

Change-Id: I274d28c16b20e7fbb4e23fa83d438e126bb56fcf
2024-05-08 12:53:23 +02:00
Ricardo Wurmus a12af56abd
gnu: r-rdisop: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.64.0.

Change-Id: Ife4ff5b23ce4827280d9a905f95a53119d5a3adb
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 1d58369140
gnu: r-raggedexperiment: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.28.0.

Change-Id: I6a0d62fdad2c6a0d63cbf0227a32bf41f43cf8b7
2024-05-08 12:53:23 +02:00
Ricardo Wurmus b262fe9435
gnu: r-radiogx: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.8.0.

Change-Id: I31e473c038c3750c82eb1ba92265793a33e079d5
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 50e803b4e4
gnu: r-r4rna: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.32.0.

Change-Id: I90b410b47fa10eedc33f39117c2e3bad8c5704c1
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 0f78db0b7c
gnu: r-r3cseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.50.0.

Change-Id: Id35b1b4b6e4b7fe469738601ba7342733211006e
2024-05-08 12:53:23 +02:00
Ricardo Wurmus a5aec1a666
gnu: r-hpar: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.46.0.

Change-Id: I19cec4798c2e3cc0027bc617f69be899308f37e0
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 7881ac326f
gnu: r-harshlight: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.76.0.

Change-Id: I5e64edbe1204d588395dfc3de9d993a1b768f60e
2024-05-08 12:53:23 +02:00
Ricardo Wurmus d21eedf535
gnu: r-gsva: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.52.0.
[propagated-inputs]: Add r-spatialexperiment.

Change-Id: Ie6b62b430699d2f09853c9fb5e32fae4026d231c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 1a6aaa7def
gnu: r-gseabase: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.66.0.

Change-Id: I3bdcaba553a3f23216cb12320700a0a3e4a9b1e9
2024-05-08 12:53:23 +02:00
Ricardo Wurmus f3bba92781
gnu: r-gostats: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.70.0.

Change-Id: I8d5294d59bffc77e1ffc756322eb4c366a33378c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 527a14c683
gnu: r-globaltest: Update to 5.58.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.58.0.

Change-Id: Ia73f602887c43ed4e565e75bcf370819127d0b73
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 9dc7f60a11
gnu: r-globalancova: Update to 4.22.0.
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.22.0.

Change-Id: I0838f628cafd72a81338834d23725af8006484be
2024-05-08 12:53:23 +02:00
Ricardo Wurmus d24da52e01
gnu: r-glad: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-glad): Update to 2.68.0.

Change-Id: I23a9ae3774df25944d152670505a33045a9d080a
2024-05-08 12:53:23 +02:00
Ricardo Wurmus e86eca3600
gnu: r-genomicranges: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.56.0.

Change-Id: If3a2bee7626fc0ff189baf5454ecd32ec924dccc
2024-05-08 12:53:23 +02:00
Ricardo Wurmus d8967c42bd
gnu: r-genomicfiles: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.40.0.

Change-Id: I388879e7bf8c79298aeea2e9efe919cacd03dfc3
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 5cbbe74dfb
gnu: r-genomicfeatures: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.56.0.
[propagated-inputs]: Remove r-biobase, r-biocio, r-biomart, r-httr, r-rjson, and r-rsqlite.

Change-Id: I6278eb17ce4257263d3461ae10c7592bc4ff2858
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 33d4483b83
gnu: r-genomicdatacommons: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.28.0.

Change-Id: I806d1a8f81f9f4541e6b318c623078e018f0367c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus f315a4f790
gnu: r-genomicalignments: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.40.0.

Change-Id: I01b78a49c0c4d1cd28181a2c135e987fd9106d7c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 279dd07d97
gnu: r-genomeinfodb: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.40.0.
[propagated-inputs]: Remove r-rcurl; add r-ucsc-utils.

Change-Id: I5146dbd585fa622b50879832bdaa0034c38fd4ba
2024-05-08 12:53:23 +02:00
Ricardo Wurmus 8e690a6950
gnu: r-genomation: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.36.0.

Change-Id: I55871cadc7e391f1c3af61a5ed83c36d7e8a5253
2024-05-08 12:53:23 +02:00
Ricardo Wurmus d69d0f84b8
gnu: r-geneoverlap: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.40.0.

Change-Id: I602463977ac37403ee938fd309f901ebd11d1f77
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 22a6c1f765
gnu: r-genefilter: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.86.0.

Change-Id: Iab450b1502832422bb45ee7b00247368a6898818
2024-05-08 12:53:22 +02:00
Ricardo Wurmus cddd24c450
gnu: r-gage: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.54.0.

Change-Id: Ie455bb98bca5d3d7a741ef0172d064a375cf1556
2024-05-08 12:53:22 +02:00
Ricardo Wurmus d0c40e12ae
gnu: r-fastseg: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.50.0.

Change-Id: I4ec7016587a6a497009b04b59a1fd33cdd72b9cb
2024-05-08 12:53:22 +02:00
Ricardo Wurmus d7efd3ea46
gnu: r-epidish: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-epidish): Update to 2.20.0.

Change-Id: I836109020ba9ae3cc0ed3a0b8334fd6ff0930c44
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 0f4c0d59c7
gnu: r-ensembldb: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.28.0.

Change-Id: If88b3d9dd605a4129b3602e680347a4a148312ae
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 5392532dbf
gnu: r-enmix: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.40.0.

Change-Id: I5e98695357d26e3aef02f25140cd25295ed6f783
2024-05-08 12:53:22 +02:00
Ricardo Wurmus a1cf3f862a
gnu: r-enhancedvolcano: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.22.0.

Change-Id: I9390eb439700daf7ab53d5883688a05757004c99
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 30be4dea15
gnu: r-edger: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.2.0.

Change-Id: Ide6a7aaf2a313923dd1e6ff9e768dfce03010c34
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 02f37641c7
gnu: r-edaseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.38.0.

Change-Id: I44c161680cf0d49d4b72b8ed4f40841a74cbf948
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 602331607d
gnu: r-dittoseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.16.0.

Change-Id: I9159c299fd82883a2d03e2fa17399c1d24cb7c62
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 64474d5d84
gnu: r-dirichletmultinomial: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.46.0.

Change-Id: I0ef2d8bbca26042d001babd7bd25120144bad7cc
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 0e9bde0048
gnu: r-diffcyt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.24.0.

Change-Id: Ib7c5cf3735f78eb183ce4dc17307ad863d16c010
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 2d5d0ab72f
gnu: r-dexseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.50.0.

Change-Id: I5b695996799b23aeebf0545346264e3b02cf3ec5
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 4c5c6b070e
gnu: r-deseq2: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.44.0.

Change-Id: I7108fee1c2bf927a43d339ee5640d4a1bed6a2f4
2024-05-08 12:53:22 +02:00
Ricardo Wurmus b30d4d1cc8
gnu: r-complexheatmap: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.20.0.

Change-Id: I9b557819bac13ba00ee86dd43709c4e1b7517cde
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 1de2a99743
gnu: r-chipseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.54.0.

Change-Id: If80fc00811bd2707cbba97a64c2efe46848a8b60
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 0298c87534
gnu: r-chipseeker: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.40.0.

Change-Id: I6eb05f4da33610aa1ecb90ea75470bda1c184f0a
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 0b92bb1f1e
gnu: r-category: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.70.0.

Change-Id: Ia102f873af5883aeba3379366953cecdec2be342
2024-05-08 12:53:22 +02:00
Ricardo Wurmus e6032ad668
gnu: r-bsgenome: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.72.0.

Change-Id: Id0855145e079e607ab915ef9076c637059c81fd8
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 9a071ad941
gnu: r-biovizbase: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.52.0.

Change-Id: I71ac5375c00fadedc44c4f027b236648b3e2a4cd
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 472ed71761
gnu: r-biostrings: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.0.

Change-Id: I7ddcf26e34210dd6065fdd8c937e68f256fee43e
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 065b98f30d
gnu: r-biocparallel: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.38.0.

Change-Id: I943f443a0f6f3182c9f7fd11f57e1bfabb6c04df
2024-05-08 12:53:22 +02:00
Ricardo Wurmus cfddce9f42
gnu: r-biomart: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.0.
[propagated-inputs]: Remove r-httr and r-xml; add r-httr2.

Change-Id: I6460b29e2a4d92be9e4675ddf461f65f79585449
2024-05-08 12:53:21 +02:00
Ricardo Wurmus a1d32a9206
gnu: r-biobase: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.64.0.

Change-Id: I5330e457bbabd007683ed869b539bd38a407df30
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 5970c028f0
gnu: r-bamsignals: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.36.0.

Change-Id: I99174b5d88723a8e6606cf067353f2051bab39d1
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 9b11dc5b0b
gnu: r-aroma-light: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.34.0.

Change-Id: I88f47a7143e875b60fea818bdb4d7b037345d055
2024-05-08 12:53:21 +02:00
Ricardo Wurmus c2a3f81a63
gnu: r-annotationhub: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.12.0.
[propagated-inputs]: Remove r-interactivedisplaybase.

Change-Id: I849b7fcc5eea1cc48076b134fddda17bc8461973
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 5c889fbcfd
gnu: r-annotationforge: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.46.0.

Change-Id: Ieabb5d5d3f990d961014003d47eb5dd21656ebc2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 131109f910
gnu: r-annotationfilter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.28.0.

Change-Id: Ib4cad5054f1cf174ee2ecb589f8442e9dc86e5dc
2024-05-08 12:53:21 +02:00
Ricardo Wurmus d90bc96e17
gnu: r-annotationdbi: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.66.0.

Change-Id: Ia103d540fc7e872fd96bffa044076c969c072319
2024-05-08 12:53:21 +02:00
Ricardo Wurmus cb56dc94bc
gnu: r-annotate: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.82.0.

Change-Id: I9940d1837c62c2421513021fe12fb87e629ba0df
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 55dca2271e
gnu: r-affxparser: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.76.0.

Change-Id: I9c412f0ef4f29d50e07f32a6944f13ba470cc6c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 563de39417
gnu: r-affyio: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.74.0.

Change-Id: If694dbba3f447019bb822ba94ff73976b77864c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 2299ed5417
gnu: r-affycoretools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.76.0.

Change-Id: I486f8aca7a0d2a9640b3ae05ba50fdc6420fde24
2024-05-08 12:53:21 +02:00
Ricardo Wurmus b563dc47fd
gnu: r-affycontam: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.62.0.

Change-Id: Ia2688e906b16b11d96925beded22d47cbb3f67c0
2024-05-08 12:53:21 +02:00
Ricardo Wurmus fdd6664fb1
gnu: r-affycomp: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.80.0.

Change-Id: I544133d53f46e156cd0483c27a88c56f31be4af4
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 65e26fef18
gnu: r-affy: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.82.0.

Change-Id: Ie17dffe76198632a8e1ea6f7a0f1c9eb68049b98
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 0949c9f244
gnu: r-nebulosa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.14.0.

Change-Id: I9d86fabf46fe139c6e6f210f46dafd5132c5adad
2024-05-08 12:53:21 +02:00
Ricardo Wurmus c322655c7d
gnu: r-italics: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.64.0.

Change-Id: Ibed68d0d8209db3f5a76c507a58c76389d546af2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus a32bba3fb6
gnu: r-isoformswitchanalyzer: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.4.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I1e6f6767698f2f97cfc53637987a824a6d80609d
2024-05-08 12:53:21 +02:00
Ricardo Wurmus b4d31f1a10
gnu: r-iranges: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.38.0.

Change-Id: I9e1a24614dcfc179a5659b3bccdde26cb7b06dab
2024-05-08 12:53:21 +02:00
Ricardo Wurmus f4c03a251e
gnu: r-infercnv: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.20.0.
[inputs]: Remove python.

Change-Id: Ib8666fd27a504c824c747cc27960bde490459544
2024-05-08 12:53:21 +02:00
Ricardo Wurmus bec276a979
gnu: r-ideoviz: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.40.0.

Change-Id: I5b40d23a9955c9844eee99525977fdf72d7f31a8
2024-05-08 12:53:21 +02:00
Ricardo Wurmus d140d8a1c9
gnu: r-bluster: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.14.0.

Change-Id: I1648c28f20ff3649face1ac35ad76301591c5989
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 6b72971be3
gnu: r-dyndoc: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.82.0.

Change-Id: Ib44ec47e918a680d271e8c8ea81db745f1f06325
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 657c030a57
gnu: r-dss: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-dss): Update to 2.52.0.

Change-Id: I8c0e6f9d232d74037efc76db8e11cc6ae1035d63
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 071eedcbc1
gnu: r-dropletutils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.24.0.

Change-Id: I95b2770d95b73ca6aee987b4dadaf9d125bf5ba8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus fa46220283
gnu: r-drimseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.32.0.

Change-Id: Iff51e039659421421e54bf47765fb6e0d5ae8508
2024-05-08 12:53:20 +02:00
Ricardo Wurmus a841f1f692
gnu: r-dmrcate: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.0.
[propagated-inputs]: Add r-annotationhub.

Change-Id: I1b91adbb7d766d3301d2cd03b933c57fe755dd8a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 7f4e7bff48
gnu: r-derfinderhelper: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.38.0.

Change-Id: Iefab596f9f9d795d0fbcb85c2e01cea0f0263877
2024-05-08 12:53:20 +02:00
Ricardo Wurmus d9002c14f9
gnu: r-derfinder: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.38.0.

Change-Id: I4f73fe46311540dd31e3eb9d58114a555cada8ce
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 4b2e1b69cd
gnu: r-densvis: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.14.0.

Change-Id: I7d8d13236a8e2a87dd6ab1cb6fac7277c615c170
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 5c93327cd9
gnu: r-delayedarray: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.0.

Change-Id: I2b823b0f6da15420f9f208932e2306cde7c6de0e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus fbfb298d0e
gnu: r-degreport: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.0.

Change-Id: I481637b9d661addbf2bc3ebaf1d396fc0087561e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 622dc493e7
gnu: r-deepsnv: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.50.0.

Change-Id: Idb65967f3c76960b1db761c662adda3c84586abd
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 8e5486f5bd
gnu: r-decoupler: Update to 2.9.7.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.9.7.
[propagated-inputs]: Add r-biocparallel and r-parallelly.

Change-Id: I8218c03aa7cfea84b9df58ff17500f9d3a6ecac5
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 12f94fb1ae
gnu: r-deconvr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.10.0.

Change-Id: Ia56bc18028860d0aaeb78d479d5b7b162b5908b6
2024-05-08 12:53:20 +02:00
Ricardo Wurmus ebb70fe9b6
gnu: r-decontam: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.24.0.

Change-Id: Ia740e8953bd970ba9454944da2459a8d39c990bf
2024-05-08 12:53:20 +02:00
Ricardo Wurmus f1dbdc8522
gnu: r-deconrnaseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.46.0.

Change-Id: I637bcbd43e55d0125a2273e2431b9effebb4d409
2024-05-08 12:53:20 +02:00
Ricardo Wurmus aec3a47c8c
gnu: r-decomptumor2sig: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.20.0.

Change-Id: I4f7cd015a500b904d725a9098907253b81e7d57c
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 40e85015aa
gnu: r-decipher: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 3.0.0.
[propagated-inputs]: Remove r-rsqlite.

Change-Id: I8fd3b7c179b7d4e06ad1e7f592add40b77061eee
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 199305df78
gnu: r-dearseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.16.0.

Change-Id: I34f7edb001fb1f63e67b5e2c8378f746aa8b7ad8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 94b4335bd5
gnu: r-damefinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.16.0.

Change-Id: I934f27e813e05d5cfef32eb0bec0bd784a200c5a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 091e0144a2
gnu: r-dama: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.76.0.

Change-Id: Ia2f960bffb184165a8aecfdb6673c03f4f10fc57
2024-05-08 12:53:20 +02:00
Ricardo Wurmus ba9b588001
gnu: r-cummerbund: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.46.0.

Change-Id: Ia93d7cb81143bfd418d943717ee1cd5e748a0902
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 6134ddd012
gnu: r-coverageview: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.42.0.

Change-Id: I357e71ea80487c2ea7d6c0b8444684567c901af1
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 5c83d7b88c
gnu: r-coregx: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.8.0.

Change-Id: I1d33a891228edf133d8cb0948bb605df2c9c5765
2024-05-08 12:53:20 +02:00
Ricardo Wurmus cf92a83ec2
gnu: r-cellid: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.12.0.

Change-Id: I620fe4d005eb28786f3d6b50b3459953f23e8184
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 807f16e459
gnu: r-cardelino: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.6.0.

Change-Id: I2b3b37fb959546ae218f03cd727a32a1808a224b
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 5ae5bc6a87
gnu: r-breakpointr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.22.0.

Change-Id: If1c9422eb8780bbeafb5054c5b0533411f40590d
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 94cb2cee11
gnu: r-biocgenerics: Update to 0.50.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.50.0.

Change-Id: I2b44832f6cde8d943db8307050efa6b68bb814b4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus eaeab2d12d
gnu: r-biocversion: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.19.1.

Change-Id: Ia707fe47c7749cc63fa057dddcc0d49f7443c2a1
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 06f7d75e10
gnu: r-barcodetrackr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.12.0.

Change-Id: Ia20e92c383c7a89e1d6accba98cf879cd57de25a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 89c8795fb8
gnu: r-banocc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.28.0.

Change-Id: I90a50fc574f2c064375acad39315b167c5cb3586
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 47ab649ecd
gnu: r-bandits: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.20.0.

Change-Id: Icaa2655549d255e2894ed15977f0e5f0c9041fc4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 3f1b37c851
gnu: r-bambu: Update to 3.6.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.6.0.

Change-Id: I206c2867ba40bba100bd23c7d861bc3be778e09f
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 23d6984ba1
gnu: r-badregionfinder: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.32.0.

Change-Id: I396ff2488562d13c93280082e93e5de3821c93da
2024-05-08 12:53:19 +02:00
Ricardo Wurmus ef47716688
gnu: r-bader: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.42.0.

Change-Id: I6fa42bf109b5e5bfad1eb4f032e453475af42c2e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 2f1fe68bee
gnu: r-basespacer: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.48.0.

Change-Id: I9e2b2cb3a9497453e2653cdbe0288987ea187f0a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 48c7540a27
gnu: r-bags: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-bags): Update to 2.44.0.

Change-Id: I4d7438dca325f8814d7c3bc644aa79c2ebab9d22
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 204c59d2fd
gnu: r-baalchip: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.30.0.
[inputs]: Remove perl.

Change-Id: I42125e71f8985a4b9d9e797b1178386d2f9d6451
2024-05-08 12:53:19 +02:00
Ricardo Wurmus e1c3e7b8d0
gnu: r-awst: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.12.0.

Change-Id: I1d9bdf4378b978bf9a3ee6e996c78eb25c2e10ad
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 6622a40596
gnu: r-awfisher: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.18.0.

Change-Id: I0f28eefaa791426014d2ed3268aa6a8cff6ac6ef
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 030591f684
gnu: r-attract: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.56.0.

Change-Id: Ic9657b83e27fd228ef454b4f455fbb79002f056e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 00c6334309
gnu: r-atsnp: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.20.0.

Change-Id: I36f9baa45b2483bcbb0c9a25c5b938c4a0df16fa
2024-05-08 12:53:19 +02:00
Ricardo Wurmus cd616ff646
gnu: r-atena: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.10.0.
[propagated-inputs]: Add r-cli, r-genomicfeatures, and r-matrixgenerics.

Change-Id: I2aef381c001638e111125cd60b07b5fc7b9e01a9
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 499ca07277
gnu: r-asset: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.22.0.

Change-Id: Ie3984d92c32734b258f4106d9bef01bef060e089
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 537c1879a8
gnu: r-assessorf: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.22.0.

Change-Id: Ic2f5c1a2e5443e69574e30abe86ae3a19c2156ea
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 2fc6d3bf31
gnu: r-aspli: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.14.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: Ib60f87bf6166c68c6baded4e8555bafcf9573100
2024-05-08 12:53:19 +02:00
Ricardo Wurmus e9d16dec70
gnu: r-asics: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.0.

Change-Id: I6a778323b57e99a8bc8c1a2e2227079d9bdaff1c
2024-05-08 12:53:19 +02:00
Ricardo Wurmus ddddc13f93
gnu: r-asgsca: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.38.0.

Change-Id: I3f22548eae87db3eeb6691b45c30ab2edd452aac
2024-05-08 12:53:19 +02:00
Ricardo Wurmus dffc5cf95c
gnu: r-aseb: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.48.0.

Change-Id: Ifb4450374fa2831bab9e360de6ec12f7c22f47d9
2024-05-08 12:53:18 +02:00
Ricardo Wurmus f4c71864d5
gnu: r-asafe: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.30.0.

Change-Id: Id54647b1dadf071ea51c180ca50e5386a6078188
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 3f31823f41
gnu: r-arrayquality: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.82.0.

Change-Id: I94b389cd121cb3748ad7a938c37b0c5152820ba3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus a0cef9b470
gnu: r-arraymvout: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.62.0.

Change-Id: Ic8cc9efc851af7471125e2ff2084d685c099d32b
2024-05-08 12:53:18 +02:00
Ricardo Wurmus db7d9feb79
gnu: r-arrayqualitymetrics: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.60.0.

Change-Id: Ia67c533b2b5c227a8cd2acaac8ab717517cd5d05
2024-05-08 12:53:18 +02:00
Ricardo Wurmus e17b3add0d
gnu: r-arrayexpress: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.64.0.

Change-Id: I01be57f62c13271442c4fb174ad923e29f8f63e8
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 98eebefbf8
gnu: r-antiprofiles: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.44.0.

Change-Id: Iac22dec83898624e88ad67983d4809729d6e2d09
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 98890f8da7
gnu: r-annmap: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.46.0.

Change-Id: I2f693693c75b2729aa81c593c0ff3c07cc4f486f
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 22784fbacf
gnu: r-anf: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anf): Update to 1.26.0.

Change-Id: I0027bfaa713cf5b75c9ec52d72715c1d56955b92
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 28cbac7461
gnu: r-aneufinder: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.32.0.

Change-Id: I1e3061cf514b735c84abc8b4e850236f493dd75d
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 416fb74e92
gnu: r-altcdfenvs: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.66.0.

Change-Id: I4d6881076a68394206501f254045ff59a2b4bcec
2024-05-08 12:53:18 +02:00
Ricardo Wurmus d237852199
gnu: r-alpsnmr: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.6.0.

Change-Id: Ia35eda0125de276989767b8d663a128f3014582a
2024-05-08 12:53:18 +02:00
Ricardo Wurmus b6f742d0f6
gnu: r-alphabeta: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.18.0.

Change-Id: I9970a01aec806faad204033d9ece392becfaca99
2024-05-08 12:53:18 +02:00