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Author SHA1 Message Date
Marius Bakke 30c3ab3807
gnu: QEMU: Update to 6.2.0. 
* gnu/packages/patches/qemu-CVE-2021-20203.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 6.2.0.
[source](patches): Remove obsolete patch.
 2022-01-11 18:36:40 +01:00
Marius Bakke 96c214f505
gnu: python-imagecodecs: Disable sanity check. 
* gnu/packages/python-xyz.scm (python-imagecodecs)[arguments]: Disable
sanity-check phase.
 2022-01-11 18:36:39 +01:00
Marius Bakke 5d9dbe0819
gnu: python-pywavelets: Update to 1.2.0. 
* gnu/packages/python-xyz.scm (python-pywavelets): Update to 1.2.0.
 2022-01-11 18:36:39 +01:00
Marius Bakke c7ef428a18
gnu: python-scikit-rebate: Update to 0.62. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62.
[arguments]: Disable tests.
[native-inputs]: Remove.
 2022-01-11 18:36:39 +01:00
Marius Bakke bc5b1dce07
gnu: python-apache-libcloud: Fix bytecode compilation. 
* gnu/packages/python-xyz.scm (python-apache-libcloud)[arguments]: Fix
indentation of test code.  While here, remove input label usage and trailing
 #t's.
 2022-01-11 18:36:39 +01:00
Marius Bakke 11323c2d54
gnu: python-dictdiffer: Update to 0.9.0. 
* gnu/packages/python-xyz.scm (python-dictdiffer): Update to 0.9.0.
 2022-01-11 18:36:39 +01:00
Marius Bakke ce958bfcd9
gnu: python-dictdiffer: Disable tests. 
* gnu/packages/python-xyz.scm (python-dictdiffer)[arguments]: New field.
[native-inputs]: Remove test inputs.
 2022-01-11 18:36:39 +01:00
Marius Bakke d695a63ec9
gnu: authenticator: Remove input labels. 
* gnu/packages/gnome.scm (authenticator)[native-inputs]: Remove labels.
[arguments]: While at it, remove top-level Python reference in favor of
THIS-PACKAGE-INPUT.
[inputs]: Add PYTHON.
 2022-01-11 18:36:39 +01:00
Marius Bakke 81cbf8854a
gnu: authenticator: Fix build. 
* gnu/packages/gnome.scm (authenticator)[arguments]: Add #:meson.
 2022-01-11 18:36:39 +01:00
Marius Bakke d89e7465d1
gnu: mycli: Placate sanity check. 
* gnu/packages/databases.scm (mycli)[arguments]: Add phase.
 2022-01-11 18:36:38 +01:00
Marius Bakke 78a57d8b7a
gnu: python-pyperclip: Update to 1.8.2. 
* gnu/packages/xdisorg.scm (python-pyperclip): Update to 1.8.2.
 2022-01-11 18:36:38 +01:00
Marius Bakke 6a86d59e28
gnu: pantalaimon: Disable sanity check. 
* gnu/packages/matrix.scm (pantalaimon)[arguments]: Disable sanity-check phase.
 2022-01-11 18:36:38 +01:00
Marius Bakke e768df37c1
gnu: python-oslo.i18n: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.i18n)[arguments]: Add #:tests?.
[native-inputs]: Remove PYTHON-MOCK, PYTHON-MOX3, PYTHON-OSLOTEST, and
PYTHON-TESTSCENARIOS.
 2022-01-11 18:36:38 +01:00
Marius Bakke eef8b08191
gnu: poetry: Use python-msgpack. 
* gnu/packages/python-xyz.scm (poetry)[propagated-inputs]: Change
PYTHON-MSGPACK-TRANSITIONAL to PYTHON-MSGPACK.
 2022-01-11 18:36:38 +01:00
Marius Bakke dab711ca33
gnu: python-pifpaf: Update to 3.1.5. 
* gnu/packages/python-xyz.scm (python-pifpaf): Update to 3.1.5.
[propagated-inputs]: Remove PYTHON-SIX.
 2022-01-11 18:36:38 +01:00
Marius Bakke 0db89cc03f
gnu: python-os-testr: Update to 2.0.1. 
* gnu/packages/openstack.scm (python-os-testr): Update to 2.0.1.
[propagated-inputs]: Change from PYTHON-SUBUNIT to PYTHON-STESTR.
 2022-01-11 18:36:38 +01:00
Marius Bakke 6613661c6d
gnu: python-cmd2: Update to 2.3.3. 
* gnu/packages/python-xyz.scm (python-cmd2): Update to 2.3.3.
[arguments]: Override check phase.
[native-inputs]: Remove PYTHON-CODECOV, PYTHON-COVERAGE, PYTHON-DOC8,
PYTHON-FLAKE8, PYTHON-SPHINX, PYTHON-SPHINX-AUTOBUILD,
PYTHON-SPHINX-RTD-THEME, PYTHON-TOX, PYTHON-TWINE, and WHICH.
 2022-01-11 18:36:38 +01:00
Marius Bakke e9afca64e8
gnu: python-xattr: Update to 0.9.9. 
* gnu/packages/python-xyz.scm (python-xattr): Update to 0.9.9.
 2022-01-11 18:36:37 +01:00
Marius Bakke 36057bfb78
gnu: node: Simplify inputs. 
* gnu/packages/node.scm (node)[native-inputs]: Remove labels.
[source]: Remove trailing #t.
 2022-01-11 18:36:37 +01:00
Marius Bakke ebc097699c
gnu: node: Disable flaky test. 
* gnu/packages/node.scm (node, node-lts)[arguments]: Delete flaky test.
 2022-01-11 18:36:37 +01:00
Marius Bakke 5b8af1a592
gnu: python-sqlparse: Specify CPE name. 
* gnu/packages/databases.scm (python-sqlparse)[properties]: New field.
 2022-01-11 18:36:37 +01:00
Marius Bakke 8d5bdb93e2
gnu: python-sqlparse: Update to 0.4.2 [fixes CVE-2021-32839]. 
* gnu/packages/databases.scm (python-sqlparse): Update to 0.4.2.
 2022-01-11 18:36:37 +01:00
Vinicius Monego 33898cd5b7
gnu: python-zeroconf: Update to 0.38.1. 
* gnu/packages/python-xyz.scm (python-zeroconf): Update to 0.38.1.
[source]: Fetch from GitHub.
[native-inputs]: Remove python-nose. Add python-pytest.
[arguments]<#:phases>: Adjust custom 'check phase to use Pytest.
[description]: Don't break line.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:33 +01:00
Vinicius Monego abb259b1bf
gnu: python-colorlog: Update to 6.6.0. 
* gnu/packages/python-xyz.scm (python-colorlog): Update to 6.6.0.
[source]: Make some cosmetic changes.
[arguments]<#:phases>: Simplify custom 'check phase and respect #:tests?.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:32 +01:00
Vinicius Monego df1e2353df
gnu: python-watchdog: Update to 2.1.6. 
* gnu/packages/python-xyz.scm (python-watchdog): Update to 2.1.6.
[source]: Make some cosmetic changes.
[arguments]<#:phases>: Remove 'remove-failing phase. Override 'check phase and
skip a failing test.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:32 +01:00
Vinicius Monego 07164966fe
gnu: python-pkginfo: Update to 1.8.2. 
* gnu/packages/python-xyz.scm (python-pkginfo): Update to 1.8.2.
[source]: Make some cosmetic changes.
[arguments]<#:phases>: Don't return #t.
[native-inputs]: Add python-wheel.
[home-page]: Don't break line.
[synopsis]: Don't break line.
[description]: Fix indentation.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:31 +01:00
Vinicius Monego 7fd7416728
gnu: python-websocket-client: Update to 0.59.0. 
* gnu/packages/python-web.scm (python-websocket-client): Update to 0.59.0.
[source]: Update PyPI URI. Make some cosmetic changes.
[arguments]<#:phases>: Add phase 'skip-network-test.
[native-inputs]: Add python-pysocks.
[home-page]: Follow redirect.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:31 +01:00
Vinicius Monego b2bd183b14
gnu: python-netifaces: Update to 0.11.0. 
* gnu/packages/python-xyz.scm (python-netifaces): Update to 0.11.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:30 +01:00
Vinicius Monego 4e7fad9914
gnu: python-feedparser: Enable tests. 
* gnu/packages/web.scm (python-feedparser)[source]: Make some cosmetic
changes.
[arguments]: Remove #:tests?. Override 'check phase.
[home-page]: Don't break line.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:30 +01:00
Vinicius Monego 3d2ea6a50b
gnu: Add python-pytest-doctest-custom. 
* gnu/packages/python-check.scm (python-pytest-doctest-custom): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:30 +01:00
Vinicius Monego a3d0a702ad
gnu: Add python-sentry-sdk. 
* gnu/packages/python-xyz.scm (python-sentry-sdk): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:29 +01:00
Vinicius Monego bd9998db98
gnu: Add python-executing. 
* gnu/packages/python-xyz.scm (python-executing): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:29 +01:00
Vinicius Monego 05c9dbbc41
gnu: Add python-zipstream-new. 
* gnu/packages/python-xyz.scm (python-zipstream-new): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:28 +01:00
Vinicius Monego a6c883727b
gnu: Add python-flask-assets. 
* gnu/packages/python-web.scm (python-flask-assets): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:28 +01:00
Vinicius Monego ae313005c8
gnu: Add python-pyscss. 
* gnu/packages/python-web.scm (python-pyscss): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:28 +01:00
Vinicius Monego 5b43b55846
gnu: Add python-pylru. 
* gnu/packages/python-xyz.scm (python-pylru): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:27 +01:00
Vinicius Monego 276038ceb2
gnu: Add python-sarge. 
* gnu/packages/python-xyz.scm (python-sarge): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 18:07:27 +01:00
Guillaume Le Vaillant f7afefba00
gnu: epiphany: Fix build with libportal-0.5. 
* gnu/packages/patches/epiphany-update-libportal-usage.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (epiphany)[source]: Use it.
 2022-01-11 16:09:06 +01:00
Daniel Meißner 0957f20cb7
gnu: eog: Fix build with libportal-0.5. 
After the update to libportal-0.5 in 294476022f
eog fails with:

../eog-40.3/src/eog-util.c:48:10: fatal error: libportal/portal-gtk3.h: No such file or directory

This was already fixed upstream and this commits extracts the patch.

* gnu/packages/patches/eog-update-libportal-usage.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm(eog)[origin]: Add new patch.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-01-11 15:45:51 +01:00
Daniel Meißner e92afc5904
gnu: libportal: Build backend for GTK+3. 
* gnu/packages/freedesktop.scm (libportal)[arguments]: Change configure-flags
  to build backend for GTK+3.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-01-11 15:45:32 +01:00
Guillaume Le Vaillant 9a2cf2c923
gnu: kicad: Fix hashes. 
This is a followup to e2d8125a5c.

* gnu/packages/engineering.scm (kicad-footprints, kicad-packages3d,
  kicad-templates)[source]: Fix hashes.
 2022-01-11 15:31:22 +01:00
Foo Chuan Wei d19be32eca
gnu: Add cl-magic-ed. 
* gnu/packages/lisp-xyz.scm (cl-magic-ed, ecl-magic-ed, sbcl-magic-ed): New
variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-01-11 15:31:22 +01:00
Foo Chuan Wei c774717d47
gnu: Add cl-sxml. 
* gnu/packages/lisp-xyz.scm (cl-sxml, ecl-cl-sxml, sbcl-cl-sxml): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-01-11 15:31:22 +01:00
Efraim Flashner eea0a5fb72
gnu: claws-mail: Remove input labels. 
* gnu/packages/mail.scm (claws-mail)[inputs]: Remove input labels.
[arguments]: Use search-input-file.
 2022-01-11 16:05:40 +02:00
Efraim Flashner f52813ecf8
gnu: claws-mail: Build with correct librsvg. 
* gnu/packages/mail.scm (claws-mail)[inputs]: Remove duplicate librsvg.
Replace librsvg with librsvg-for-system.
 2022-01-11 16:05:40 +02:00
Ricardo Wurmus 61a1c3f72d
gnu: Add r-transcriptr. 
* gnu/packages/bioconductor.scm (r-transcriptr): New variable.
 2022-01-11 14:48:26 +01:00
Julien Lepiller 81ab201626
gnu: josm: Update to 18360. 
* gnu/packages/geo.scm (josm): Update to 18360.
 2022-01-11 14:43:20 +01:00
Ricardo Wurmus 946fd9be16
gnu: stringtie: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (stringtie): Update to 2.2.0.
[source]: Simplify snippet.
[arguments]: Add make-flags; update build phases.
[inputs]: Remove samtools-0.1; add bzip2, htslib-for-stringtie, and
libdeflate.
[license]: Change to Expat license.
 2022-01-11 14:19:54 +01:00
Ricardo Wurmus 9966f98b1b
gnu: Add htslib-for-stringtie. 
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable.
* gnu/packages/patches/htslib-for-stringtie.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-01-11 14:19:53 +01:00
Ricardo Wurmus 5b200dbfb0
gnu: python-yubikey-manager: Update to 4.0.7. 
* gnu/packages/security-token.scm (python-yubikey-manager): Update to 4.0.7.
[arguments]: Remove build phase customization; disable tests.
[inputs]: Remove yubikey-personalization and libusb.
 2022-01-11 14:19:53 +01:00