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Author SHA1 Message Date
Ricardo Wurmus
7f94cf0184
gnu: r-reportingtools: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
7f34dd58e9
gnu: r-regioner: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
07bea01092
gnu: r-hpar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
c2f4ad96f5
gnu: r-annotate: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
acaf8a2342
gnu: r-affxparser: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.60.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
fa61069781
gnu: r-affycoretools: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.60.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
36d4ca410d
gnu: r-affycontam: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.46.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
251c18f1ed
gnu: r-affycompatible: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.48.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
66aeb1b46d
gnu: r-affycomp: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.64.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
2e15c16f1e
gnu: r-biocgenerics: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.34.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
bc217e4c0c
gnu: r-biocversion: Update to 3.11.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.11.1.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
1ab0380db9
gnu: r-cummerbund: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.30.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
751fa8ff71
gnu: r-coverageview: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.26.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
725eea00da
gnu: r-ideoviz: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.24.0.
2020-06-13 01:19:47 +02:00
Roel Janssen
06fc1a5142
gnu: Add r-cummerbund.
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
2020-04-27 11:46:08 +02:00
Roel Janssen
0c0ef9c5a6
gnu: Add r-coverageview.
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
2020-04-27 10:57:22 +02:00
Roel Janssen
8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
2020-04-27 10:43:51 +02:00
Roel Janssen
cb1ab0352b
gnu: Add r-karyoploter.
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
2020-04-27 10:37:42 +02:00
Roel Janssen
e8d435f7a2
gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
2020-04-27 10:24:20 +02:00
Roel Janssen
1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description.
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
2020-04-26 21:47:19 +02:00
Roel Janssen
63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
2020-04-26 21:34:49 +02:00
Roel Janssen
886125d791
gnu: Add r-motifbreakr.
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
2020-04-26 21:24:03 +02:00
Roel Janssen
3699bcf54a
gnu: Add r-motifdb.
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
2020-04-26 21:07:45 +02:00
Roel Janssen
ec20858a6a
gnu: Add r-pasilla.
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
2020-04-26 21:02:00 +02:00
Ricardo Wurmus
3f782a6d95
gnu: r-destiny: Add missing input.
* gnu/packages/bioconductor.scm (r-destiny)[native-inputs]: Add r-nbconvertr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus
506cbeabaa
gnu: r-bacon: Add missing input.
* gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus
faaf2b3571
gnu: r-bioassayr: Add missing input.
* gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus
229736aa52
gnu: r-activepathways: Add missing input.
* gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]:
Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus
5ef2b749b5
gnu: r-dose: Add missing input.
* gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus
9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
f4be4995d6
gnu: r-a4base: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
851081bf34
gnu: r-varianttools: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
2020-04-14 16:41:00 +02:00
Vagrant Cascadian
e40ecf8a2c
gnu: r-wavcluster: Fix grammar of "allows to integrate" to "integrates".
* gnu/packages/bioconductor (r-wavcluster): Fix grammar.
2020-04-12 14:59:45 -07:00
Vagrant Cascadian
8c4bf6c29c
gnu: r-aucell: Fix grammar of "allows to identify" to "identifies".
* gnu/packages/bioconductor (r-aucell): Fix grammar.
2020-04-12 14:59:43 -07:00
Vagrant Cascadian
23c8ef7124
gnu: r-fgsea: Various grammar and spelling fixes.
* gnu/packages/bioconductor (r-fgsea): Fix spelling of "standard".
  Fix grammar of "allows to make" to "makes".
2020-04-12 14:43:52 -07:00
Ricardo Wurmus
4ecba23091
gnu: r-biocworkflowtools: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.12.1.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:27 +02:00
Ricardo Wurmus
9669bc170a
gnu: r-mixomics: Update to 6.10.9.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.9.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:27 +02:00
Ricardo Wurmus
d49e3f0190
gnu: r-cytoml: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-cytoml): Update to  1.12.1.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:26 +02:00
Ricardo Wurmus
028fd6f786
gnu: r-gofuncr: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.1.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:26 +02:00
Ricardo Wurmus
81a37891ec
gnu: r-genomicinteractions: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.2.
[native-inputs]: Add r-knitr.
2020-04-01 11:15:26 +02:00
Ricardo Wurmus
2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus
51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs.
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
2020-03-25 09:40:05 +01:00
Ricardo Wurmus
5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus
1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus
4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus
d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus
2d6a7bca9e
gnu: r-biocpkgtools: Update to 1.4.6.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.4.6.
[propagated-inputs]: Add r-biocfilecache, r-rappdirs, r-rlang, and
r-tidyselect.
[native-inputs]: Add r-knitr.
2020-03-19 10:06:27 +01:00
Ricardo Wurmus
f7100edaf6
gnu: r-biosigner: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.2.
[native-inputs]: Remove r-rmarkdown, pandoc, and pandoc-citeproc.
2020-03-19 10:06:27 +01:00
Tobias Geerinckx-Rice
486a080048
gnu: r-htqpcr: Update home page.
* gnu/packages/bioconductor.scm (r-htqpcr)[home-page]: Use HTTPS link
to PDF paper.
2020-03-17 23:09:24 +01:00