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78969 Commits (80f2d363b8ea163c1b97f61b46ec8d607e1ba49e)

Author SHA1 Message Date
Ricardo Wurmus 80f2d363b8
gnu: r-formatr: Update to 1.11. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.11.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 61d7869e89
gnu: r-mgcv: Update to 1.8-36. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-36.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus fdc6bfa2aa
gnu: r-matrix: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-4.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 72e8eabc3a
gnu: r-textshape: Update to 1.7.3. 
* gnu/packages/cran.scm (r-textshape): Update to 1.7.3.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 0af6a92695
gnu: r-calculus: Update to 0.3.1. 
* gnu/packages/cran.scm (r-calculus): Update to 0.3.1.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 9b9bb2b732
gnu: r-seurat: Update to 4.0.2. 
* gnu/packages/cran.scm (r-seurat): Update to 4.0.2.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus d9d8a1cdc0
gnu: r-parsnip: Update to 0.1.6. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.6.
[propagated-inputs]: Add r-lifecycle.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus f6ae19fedc
gnu: r-clusterr: Update to 1.2.5. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.5.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 17bd981986
gnu: r-rsconnect: Update to 0.8.18. 
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.18.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 318808dcdd
gnu: r-forecast: Update to 8.15. 
* gnu/packages/cran.scm (r-forecast): Update to 8.15.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 317267c460
gnu: r-archivist: Update to 2.3.6. 
* gnu/packages/cran.scm (r-archivist): Update to 2.3.6.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus b3aad04bed
gnu: r-biclust: Update to 2.0.3. 
* gnu/packages/cran.scm (r-biclust): Update to 2.0.3.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 83fa31438d
gnu: r-actuar: Update to 3.1-4. 
* gnu/packages/cran.scm (r-actuar): Update to 3.1-4.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 184b3c500c
gnu: r-gdina: Update to 2.8.7. 
* gnu/packages/cran.scm (r-gdina): Update to 2.8.7.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 47cdb9c9a8
gnu: r-parameters: Update to 0.14.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.14.0.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 8998ed1d8e
gnu: r-leiden: Update to 0.3.8. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.8.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 81bb987e7e
gnu: r-plot3d: Update to 1.4. 
* gnu/packages/cran.scm (r-plot3d): Update to 1.4.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 509eea0f5d
gnu: r-dalex: Update to 2.2.1. 
* gnu/packages/cran.scm (r-dalex): Update to 2.2.1.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 37fc760ef1
gnu: r-spdep: Update to 1.1-8. 
* gnu/packages/cran.scm (r-spdep): Update to 1.1-8.
[source]: Remove generated files, including Rmarkdown files whose outputs
conflict with the main Rmarkdown file.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 0a6526ebfd
gnu: r-tidytree: Update to 0.3.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.4.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus ee285cb4ce
gnu: r-ks: Update to 1.13.1. 
* gnu/packages/cran.scm (r-ks): Update to 1.13.1.
[propagated-inputs]: Add r-pracma.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus caeed0e512
gnu: r-weights: Update to 1.0.2. 
* gnu/packages/cran.scm (r-weights): Update to 1.0.2.
[propagated-inputs]: Add r-lme4.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus eb991f3168
gnu: r-mvabund: Update to 4.1.12. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.12.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus a9ecb3cf20
gnu: r-sjplot: Update to 2.8.8. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.8.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 0bc5c20756
gnu: r-effectsize: Update to 0.4.5. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.5.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 3a5b90d0ab
gnu: r-bayestestr: Update to 0.10.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.0.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 0d813e0275
gnu: r-emmeans: Update to 1.6.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.1.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 304d9c5dd3
gnu: r-manipulatewidget: Update to 0.11.0. 
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.0.
[propagated-inputs]: Add r-shinyjs.
[native-inputs]: Add r-knitr.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 8b459409a9
gnu: r-insight: Update to 0.14.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.14.1.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 6c5543d1d7
gnu: r-rdpack: Update to 2.1.2. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.2.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 27bff67ea9
gnu: r-fansi: Update to 0.5.0. 
* gnu/packages/cran.scm (r-fansi): Update to 0.5.0.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus e6068fe401
gnu: r-zip: Update to 2.2.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.2.0.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus ec1666550d
gnu: r-signal: Update to 0.7-7. 
* gnu/packages/cran.scm (r-signal): Update to 0.7-7.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus c4ca93cec9
gnu: r-tinytex: Update to 0.32. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.32.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 52eaf9d864
gnu: r-fitdistrplus: Update to 1.1-5. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-5.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 05ee34f0de
gnu: r-inline: Update to 0.3.19. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.19.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 375fea067d
gnu: r-extremes: Update to 2.1-1. 
* gnu/packages/cran.scm (r-extremes): Update to 2.1-1.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus 8cc146b24a
gnu: r-bisquerna: Update to 1.0.5. 
* gnu/packages/bioconductor.scm (r-bisquerna): Update to 1.0.5.
[native-inputs]: Add r-knitr.
 2021-06-02 17:27:07 +02:00
Marius Bakke 882ec50ca1
gnu: python-django@2.2: Update to 2.2.24 [fixes CVE-2021-33203, CVE-2021-33571]. 
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.24.
 2021-06-02 17:05:55 +02:00
Marius Bakke e17b8d5e3f
gnu: python-django: Update to 3.2.4 [fixes CVE-2021-33203, CVE-2021-33571]. 
* gnu/packages/django.scm (python-django): Update to 3.2.4.
 2021-06-02 17:05:55 +02:00
Ron Nazarov via Guix-patches via 10343994dc
gnu: Add udftools. 
* gnu/packages/file-systems.scm (udftools): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-06-02 15:40:03 +02:00
Tobias Geerinckx-Rice 1bd85824c7
gnu: ispell: Update to 3.4.03. 
* gnu/packages/aspell.scm (ispell): Update to 3.4.03.
 2021-06-02 15:40:03 +02:00
Ricardo Wurmus 011d586c2c
gnu: Add biobambam2. 
* gnu/packages/bioinformatics.scm (biobambam2): New variable.
 2021-06-02 13:54:15 +02:00
Ricardo Wurmus 18e0081045
gnu: Add libmaus2. 
* gnu/packages/bioinformatics.scm (libmaus2): New variable.
 2021-06-02 13:54:15 +02:00
Ricardo Wurmus f01215635a
gnu: r-with-tests: Update to 4.1.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.0.
 2021-06-02 13:54:15 +02:00
Tobias Geerinckx-Rice 6fee3239b3
gnu: memtester: Update to 4.5.1. 
* gnu/packages/hardware.scm (memtester): Update to 4.5.1.
 2021-06-02 12:53:10 +02:00
Tobias Geerinckx-Rice fa26ca54f9
gnu: osip: Update to 5.2.1. 
* gnu/packages/telephony.scm (osip): Update to 5.2.1.
 2021-06-02 12:53:10 +02:00
Tobias Geerinckx-Rice 6c0a09b341
gnu: retroarch: Update to 1.9.4. 
* gnu/packages/emulators.scm (retroarch): Update to 1.9.4.
 2021-06-02 12:53:09 +02:00
Tobias Geerinckx-Rice 57278dc214
gnu: libavif: Update to 0.9.1. 
* gnu/packages/image.scm (libavif): Update to 0.9.1.
 2021-06-02 12:53:09 +02:00
Paul Garlick da340369ac
gnu: python-vedo: Make pkg-config a native input. 
* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to...
[native-inputs]: ...here.
 2021-06-02 10:27:59 +01:00