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91990 Commits (830405eb48c9d9723290192c577e2763bb8b9583)

Author SHA1 Message Date
Ricardo Wurmus d7b35febfc
gnu: r-leiden: Update to 0.4.3.
* gnu/packages/cran.scm (r-leiden): Update to 0.4.3.
2022-09-20 17:02:22 +02:00
Ricardo Wurmus e133664c54
gnu: r-uwot: Update to 0.1.14.
* gnu/packages/cran.scm (r-uwot): Update to 0.1.14.
[propagated-inputs]: Remove r-rspectra.
2022-09-20 17:02:22 +02:00
Ricardo Wurmus 4db93ca44b
gnu: r-umap: Update to 0.2.9.0.
* gnu/packages/cran.scm (r-umap): Update to 0.2.9.0.
2022-09-20 17:02:22 +02:00
Ricardo Wurmus c9e6f29960
gnu: r-enrichr: Update to 3.1.
* gnu/packages/cran.scm (r-enrichr): Update to 3.1.
[propagated-inputs]: Add r-curl.
2022-09-20 17:02:22 +02:00
Ricardo Wurmus 3e9da8520d
gnu: r-sctransform: Update to 0.3.4.
* gnu/packages/cran.scm (r-sctransform): Update to 0.3.4.
2022-09-20 17:02:22 +02:00
Ricardo Wurmus 544479ba7d
gnu: r-lintr: Update to 3.0.1.
* gnu/packages/cran.scm (r-lintr): Update to 3.0.1.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus c027f3ce98
gnu: r-text2vec: Update to 0.6.2.
* gnu/packages/cran.scm (r-text2vec): Update to 0.6.2.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus 25013b0ffd
gnu: r-rsparse: Update to 0.5.1.
* gnu/packages/cran.scm (r-rsparse): Update to 0.5.1.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus 47676e6b9e
gnu: r-aplot: Update to 0.1.7.
* gnu/packages/cran.scm (r-aplot): Update to 0.1.7.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus 12fca73dd8
gnu: r-ggtext: Update to 0.1.2.
* gnu/packages/cran.scm (r-ggtext): Update to 0.1.2.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus bcc7969a95
gnu: r-gridtext: Update to 0.1.5.
* gnu/packages/cran.scm (r-gridtext): Update to 0.1.5.
[propagated-inputs]: Remove r-rcurl; add r-curl.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus c47618d453
gnu: r-ggfun: Update to 0.0.7.
* gnu/packages/cran.scm (r-ggfun): Update to 0.0.7.
2022-09-20 17:02:21 +02:00
Ricardo Wurmus 3abd67e6cb
gnu: r-gbm: Update to 2.1.8.1.
* gnu/packages/cran.scm (r-gbm): Update to 2.1.8.1.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus ac9c3bee73
gnu: r-ggforce: Update to 0.3.4.
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.4.
[propagated-inputs]: Add r-lifecycle.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus d414bb103b
gnu: r-tweenr: Update to 2.0.2.
* gnu/packages/cran.scm (r-tweenr): Update to 2.0.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-vctrs.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus 43f4a370a3
gnu: r-bookdown: Update to 0.29.
* gnu/packages/cran.scm (r-bookdown): Update to 0.29.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus ef1b6a6318
gnu: r-spdep: Update to 1.2-5.
* gnu/packages/cran.scm (r-spdep): Update to 1.2-5.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus 7e93dbc2bb
gnu: r-spdata: Update to 2.2.0.
* gnu/packages/cran.scm (r-spdata): Update to 2.2.0.
[propagated-inputs]: Remove r-raster.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus e44e07965c
gnu: r-gamlss-dist: Update to 6.0-5.
* gnu/packages/cran.scm (r-gamlss-dist): Update to 6.0-5.
2022-09-20 17:02:20 +02:00
Ricardo Wurmus 7b797d4a70
gnu: r-blockmodeling: Update to 1.1.3.
* gnu/packages/cran.scm (r-blockmodeling): Update to 1.1.3.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus 36ab34a539
gnu: r-future-apply: Update to 1.9.1.
* gnu/packages/cran.scm (r-future-apply): Update to 1.9.1.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus 7f220c890a
gnu: r-future: Update to 1.28.0.
* gnu/packages/cran.scm (r-future): Update to 1.28.0.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus ae15cb2141
gnu: r-globals: Update to 0.16.1.
* gnu/packages/cran.scm (r-globals): Update to 0.16.1.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus 110c53067c
gnu: r-fields: Update to 14.1.
* gnu/packages/cran.scm (r-fields): Update to 14.1.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus 1cd0e82a5f
gnu: r-gmp: Update to 0.6-6.
* gnu/packages/cran.scm (r-gmp): Update to 0.6-6.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus 0d032e48e8
gnu: r-gargle: Update to 1.2.1.
* gnu/packages/cran.scm (r-gargle): Update to 1.2.1.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus b6bb01e680
gnu: r-ontologyindex: Update to 2.10.
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.10.
2022-09-20 17:02:19 +02:00
Ricardo Wurmus 8cce3f51fc
gnu: r-als: Update to 0.0.7.
* gnu/packages/cran.scm (r-als): Update to 0.0.7.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 3c43993891
gnu: r-tractor-base: Update to 3.3.5.1.
* gnu/packages/cran.scm (r-tractor-base): Update to 3.3.5.1.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 45ad4c4c87
gnu: r-sparsesvd: Update to 0.2-1.
* gnu/packages/cran.scm (r-sparsesvd): Update to 0.2-1.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 5f65744b7d
gnu: r-tidytree: Update to 0.4.0.
* gnu/packages/cran.scm (r-tidytree): Update to 0.4.0.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 2e87c2e76c
gnu: r-waveslim: Update to 1.8.4.
* gnu/packages/cran.scm (r-waveslim): Update to 1.8.4.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus abb5525ffe
gnu: r-admisc: Update to 0.30.
* gnu/packages/cran.scm (r-admisc): Update to 0.30.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 941500d6ec
gnu: r-arm: Update to 1.13-1.
* gnu/packages/cran.scm (r-arm): Update to 1.13-1.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 9dbbd84bac
gnu: r-rcppalgos: Update to 2.6.0.
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.6.0.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus 09ed52404b
gnu: r-chk: Update to 0.8.1.
* gnu/packages/cran.scm (r-chk): Update to 0.8.1.
2022-09-20 17:02:18 +02:00
Ricardo Wurmus e9eb863bde
gnu: r-tweedie: Update to 2.3.5.
* gnu/packages/cran.scm (r-tweedie): Update to 2.3.5.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus 8766e41ecf
gnu: r-gert: Update to 1.9.0.
* gnu/packages/cran.scm (r-gert): Update to 1.9.0.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus 53d46b7a83
gnu: r-gh: Update to 1.3.1.
* gnu/packages/cran.scm (r-gh): Update to 1.3.1.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus 0045ed1e32
gnu: r-gitcreds: Update to 0.1.2.
* gnu/packages/cran.scm (r-gitcreds): Update to 0.1.2.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus a4f40ff0ba
gnu: r-effectsize: Update to 0.7.0.5.
* gnu/packages/cran.scm (r-effectsize): Update to 0.7.0.5.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus 523f82ffd0
gnu: r-performance: Update to 0.9.2.
* gnu/packages/cran.scm (r-performance): Update to 0.9.2.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus 12aba62c33
gnu: r-bayestestr: Update to 0.13.0.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.13.0.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus e6dc7908cc
gnu: r-tmb: Update to 1.9.1.
* gnu/packages/cran.scm (r-tmb): Update to 1.9.1.
2022-09-20 17:02:17 +02:00
Ricardo Wurmus 4d1620474b
gnu: r-emmeans: Update to 1.8.1-1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.8.1-1.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus 4b4415a9d7
gnu: r-furrr: Update to 0.3.1.
* gnu/packages/cran.scm (r-furrr): Update to 0.3.1.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus 5a5e52e919
gnu: r-mosaic: Update to 1.8.4.
* gnu/packages/cran.scm (r-mosaic): Update to 1.8.4.
[propagated-inputs]: Remove r-broom, r-ggdendro, r-ggrepel, r-ggridges, r-ggstance,
r-glue, r-gridextra, r-latticeextra, r-leaflet, and r-readr; add
r-purrr.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus eb148988b0
gnu: r-raster: Update to 3.6-3.
* gnu/packages/cran.scm (r-raster): Update to 3.6-3.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus f9e5d17bb4
gnu: r-mosaicdata: Update to 0.20.3.
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.20.3.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus 923bc62935
gnu: r-ggformula: Update to 0.10.2.
* gnu/packages/cran.scm (r-ggformula): Update to 0.10.2.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus 784a5d05fe
gnu: r-labelled: Update to 2.10.0.
* gnu/packages/cran.scm (r-labelled): Update to 2.10.0.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus fb403a147b
gnu: r-mosaiccore: Update to 0.9.2.
* gnu/packages/cran.scm (r-mosaiccore): Update to 0.9.2.
2022-09-20 17:02:16 +02:00
Ricardo Wurmus 143b69422a
gnu: r-abcrf: Update to 1.9.
* gnu/packages/cran.scm (r-abcrf): Update to 1.9.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus 3d307748c7
gnu: r-flextable: Update to 0.8.0.
* gnu/packages/cran.scm (r-flextable): Update to 0.8.0.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus 567af5689f
gnu: r-insight: Update to 0.18.3.
* gnu/packages/cran.scm (r-insight): Update to 0.18.3.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus d7e46a3b9a
gnu: r-officer: Update to 0.4.4.
* gnu/packages/cran.scm (r-officer): Update to 0.4.4.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus cb9d49c18d
gnu: r-rbibutils: Update to 2.2.9.
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.9.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus acc4256ccb
gnu: r-hdf5r: Update to 1.3.6.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.6.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus 4a3cc52d9c
gnu: r-factominer: Update to 2.6.
* gnu/packages/cran.scm (r-factominer): Update to 2.6.
[propagated-inputs]: Add r-emmeans and r-multcompview.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus ffd7c3890a
gnu: r-reticulate: Update to 1.26.
* gnu/packages/cran.scm (r-reticulate): Update to 1.26.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus 8c381850af
gnu: r-dtplyr: Update to 1.2.2.
* gnu/packages/cran.scm (r-dtplyr): Update to 1.2.2.
2022-09-20 17:02:15 +02:00
Ricardo Wurmus de2564a2b2
gnu: r-zip: Update to 2.2.1.
* gnu/packages/cran.scm (r-zip): Update to 2.2.1.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus 6e03a26f2c
gnu: r-arules: Update to 1.7-4.
* gnu/packages/cran.scm (r-arules): Update to 1.7-4.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus 9ef90c6d34
gnu: r-vim: Update to 6.2.2.
* gnu/packages/cran.scm (r-vim): Update to 6.2.2.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus b475e4b381
gnu: r-radiant-data: Update to 1.4.5.
* gnu/packages/cran.scm (r-radiant-data): Update to 1.4.5.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus 29f9945039
gnu: r-np: Update to 0.60-14.
* gnu/packages/cran.scm (r-np): Update to 0.60-14.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus ff9b9f6001
gnu: r-cubature: Update to 2.0.4.5.
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.5.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus 57df402147
gnu: r-urca: Update to 1.3-3.
* gnu/packages/cran.scm (r-urca): Update to 1.3-3.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus 4905326be2
gnu: r-statnet-common: Update to 4.7.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.7.0.
2022-09-20 17:02:14 +02:00
Ricardo Wurmus b58685a375
gnu: r-tinytex: Update to 0.41.
* gnu/packages/cran.scm (r-tinytex): Update to 0.41.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus c0f7048daa
gnu: r-pillar: Update to 1.8.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.8.1.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus 8ce03b223a
gnu: r-xfun: Update to 0.33.
* gnu/packages/cran.scm (r-xfun): Update to 0.33.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus 4acecac456
gnu: r-cli: Update to 3.4.0.
* gnu/packages/cran.scm (r-cli): Update to 3.4.0.
[propagated-inputs]: Remove r-glue.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus bbbc036b09
gnu: r-scatterplot3d: Update to 0.3-42.
* gnu/packages/cran.scm (r-scatterplot3d): Update to 0.3-42.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus 2313441cea
gnu: r-jomo: Update to 2.7-4.
* gnu/packages/cran.scm (r-jomo): Update to 2.7-4.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus fedc98021e
gnu: r-broom: Update to 1.0.1.
* gnu/packages/cran.scm (r-broom): Update to 1.0.1.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus fc802d489a
gnu: r-progressr: Update to 0.11.0.
* gnu/packages/cran.scm (r-progressr): Update to 0.11.0.
2022-09-20 17:02:13 +02:00
Ricardo Wurmus 3b389cccff
gnu: r-lpsolve: Update to 5.6.16.
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.16.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus c212709262
gnu: r-restrserve: Update to 1.2.1.
* gnu/packages/cran.scm (r-restrserve): Update to 1.2.1.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus 69f2a535e2
gnu: r-prismatic: Update to 1.1.1.
* gnu/packages/cran.scm (r-prismatic): Update to 1.1.1.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus 2d013e0e99
gnu: r-palmerpenguins: Update to 0.1.1.
* gnu/packages/cran.scm (r-palmerpenguins): Update to 0.1.1.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus 2b261d2c0a
gnu: r-paletteer: Update to 1.4.1.
* gnu/packages/cran.scm (r-paletteer): Update to 1.4.1.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus 9849c6d77d
gnu: r-haven: Update to 2.5.1.
* gnu/packages/cran.scm (r-haven): Update to 2.5.1.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus c486b129fa
gnu: r-shinyfiles: Update to 0.9.3.
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.3.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus 22d4155e73
gnu: r-modelr: Update to 0.1.9.
* gnu/packages/cran.scm (r-modelr): Update to 0.1.9.
2022-09-20 17:02:12 +02:00
Ricardo Wurmus 5897c7b6f2
gnu: r-readxl: Update to 1.4.1.
* gnu/packages/cran.scm (r-readxl): Update to 1.4.1.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus 056f8eed57
gnu: r-callr: Update to 3.7.2.
* gnu/packages/cran.scm (r-callr): Update to 3.7.2.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus b09ba421ef
gnu: r-reprex: Update to 2.0.2.
* gnu/packages/cran.scm (r-reprex): Update to 2.0.2.
[propagated-inputs]: Add r-lifecycle.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus cd6b82cdd8
gnu: r-rvest: Update to 1.0.3.
* gnu/packages/cran.scm (r-rvest): Update to 1.0.3.
[propagated-inputs]: Add r-cli, r-glue, and r-withr.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus 4611b0676c
gnu: r-astsa: Update to 1.16.
* gnu/packages/cran.scm (r-astsa): Update to 1.16.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus 120dd1c0e2
gnu: r-poorman: Update to 0.2.6.
* gnu/packages/cran.scm (r-poorman): Update to 0.2.6.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus 786c64fd82
gnu: r-scales: Update to 1.2.1.
* gnu/packages/cran.scm (r-scales): Update to 1.2.1.
2022-09-20 17:02:11 +02:00
Ricardo Wurmus df7f9236ee
gnu: r-ggpmisc: Update to 0.5.0.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.0.
[propagated-inputs]: Add r-confintr.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus 11669e8ee4
gnu: r-ggvenndiagram: Update to 1.2.2.
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.2.2.
[propagated-inputs]: Remove r-stringr; add r-yulab-utils.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus 0fb5a1bd2f
gnu: r-zoo: Update to 1.8-11.
* gnu/packages/cran.scm (r-zoo): Update to 1.8-11.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus af257e509d
gnu: r-babelwhale: Update to 1.1.0.
* gnu/packages/cran.scm (r-babelwhale): Update to 1.1.0.
[propagated-inputs]: Add r-digest, r-fs, and r-glue.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus 9878daa19d
gnu: r-rticles: Update to 0.24.
* gnu/packages/cran.scm (r-rticles): Update to 0.24.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus ae4a57b967
gnu: r-googlesheets4: Update to 1.0.1.
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.1.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus 5ba2bda97c
gnu: r-dixontest: Update to 1.0.4.
* gnu/packages/cran.scm (r-dixontest): Update to 1.0.4.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus 6e052e0b7c
gnu: r-datawizard: Update to 0.6.0.
* gnu/packages/cran.scm (r-datawizard): Update to 0.6.0.
2022-09-20 17:02:10 +02:00
Ricardo Wurmus 93328f8b89
gnu: r-activedriverwgs: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 8f3787576c
gnu: r-htscluster: Update to 2.0.10.
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus b1dd1f221f
gnu: r-perfmeas: Update to 1.2.5.
* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 9c91113ee7
gnu: r-valr: Update to 0.6.5.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 1e3d01dd05
gnu: r-httpuv: Update to 1.6.6.
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Replace this patch...
* gnu/packages/patches/r-httpuv-1.6.6-unvendor-libuv.patch: ...with this.
* gnu/local.mk (dist_patch_DATA): Update patch file.
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.6.
[source]: Update patch.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 7da529c577
gnu: r-dt: Update to 0.25.
* gnu/packages/statistics.scm (r-dt): Update to 0.25; update jszip to 3.10.1.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 921ac834db
gnu: r-torch: Update to 0.8.1.
* gnu/packages/cran.scm (r-torch): Update to 0.8.1.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 8e321254c0
gnu: r-torch: Do not hardcode Python version.
* gnu/packages/cran.scm (r-torch)[arguments]: Do not hardcode Python version 3.9.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 2b39d85ac4
gnu: liblantern: Update to 0.8.1.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.1.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 7531efe54d
gnu: liblantern: Do not hardcode Python version.
* gnu/packages/machine-learning.scm (liblantern)[arguments]: Do not hardcode
Python version.
2022-09-20 17:02:09 +02:00
Ricardo Wurmus 851441a5d9
gnu: r-arrow: Update to 9.0.0.1.
* gnu/packages/cran.scm (r-arrow): Update to 9.0.0.1.
2022-09-20 17:02:08 +02:00
Ricardo Wurmus e5e5b2a15a
gnu: apache-arrow: Update to 9.0.0.
* gnu/packages/databases.scm (apache-arrow): Update to 9.0.0.
2022-09-20 17:02:08 +02:00
Ricardo Wurmus 71d87df8bf
gnu: r-rintrojs: Update to 0.3.2.
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.2.
2022-09-20 17:02:08 +02:00
Ricardo Wurmus 487fb5f624
gnu: Add r-confintr.
* gnu/packages/cran.scm (r-confintr): New variable.
2022-09-20 17:02:08 +02:00
Ricardo Wurmus 9e589ca6e3
gnu: rust-sprs-0.10: Inherit from rust-sprs-0.11.
* gnu/packages/crates-io.scm (rust-sprs-0.10): Inherit from rust-sprs-0.11.
2022-09-20 17:01:55 +02:00
Ricardo Wurmus 4d4e2a9444
gnu: Add rust-sprs-0.11.
* gnu/packages/crates-io.scm (rust-sprs-0.11): New variable.
2022-09-20 17:01:55 +02:00
Ricardo Wurmus f5483e2661
gnu: Add rust-sprs-0.10.
* gnu/packages/crates-io.scm (rust-sprs-0.10): New variable.
2022-09-20 17:01:55 +02:00
Ricardo Wurmus 76e6459722
gnu: Add rust-tobj-2.
* gnu/packages/crates-io.scm (rust-tobj-2): New variable.
2022-09-20 17:01:54 +02:00
Ricardo Wurmus cef61a0e69
gnu: Add rust-tobj-3.
* gnu/packages/crates-io.scm (rust-tobj-3): New variable.
2022-09-20 17:01:54 +02:00
Ricardo Wurmus c311c88122
gnu: Add rust-linecount-0.1.
* gnu/packages/crates-io.scm (rust-linecount-0.1): New variable.
2022-09-20 17:01:54 +02:00
Mark H Weaver 4e88a7bfcb
gnu: icecat: Update to 102.3.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2022-40956, CVE-2022-40957, CVE-2022-40958,
CVE-2022-40959, CVE-2022-40960, and CVE-2022-40962.

Partly based on earlier work by:
  Jonathan Brielmaier <jonathan.brielmaier@web.de>
  John Kehayias <john.kehayias@protonmail.com>
  Pierre Langlois <pierre.langlois@gmx.com>
  Clement Lassieur <clement@lassieur.org>

* gnu/packages/gnuzilla.scm (all-mozilla-locales)
(%icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.  Update to latest
gnuzilla commit.  Remove the code that previously applied
"icecat-use-older-reveal-hidden-html.patch".
(icecat)[inputs]: Use icu4c-71.
[native-inputs]: Use rust-1.59.  Use the default llvm and clang.
[arguments]: Add "--without-wasm-sandboxed-libraries" to the configure
flags.  Add 'remove-cargo-frozen-flag' phase.  In the 'configure'
phase, set the "MACH_BUILD_PYTHON_NATIVE_PACKAGE_SOURCE",
"GUIX_PYTHONPATH", and "MOZBUILD_STATE_PATH" environment variables.
Remove the code that previously set the "MACH_USE_SYSTEM_PYTHON" and
"MOZ_NOSPAM" environment variables.  In the 'install-desktop-entry'
phase, add "StartupWMClass=Navigator" to the desktop file.
[description]: "IceCat 91" --> "IceCat 102".
(all-mozilla-91-locales, %icecat-91-version, icecat-91-source): New
variables bound to the old values, for use by icedove.
(icedove)[source]: Ues 'icecat-91-source'.
2022-09-20 10:40:41 -04:00
Mark H Weaver 9b0ec71df5
gnu: Add rust-cbindgen-0.23 and its dependencies to gnuzilla.scm.
This will be needed to build IceCat 102.

* gnu/packages/gnuzilla.scm (rust-textwrap-0.15-promise)
(rust-clap-lex-0.2, rust-clap-derive-3.2.15-promise)
(rust-clap-3.2.16-promise, rust-cbindgen-0.24-promise)
(rust-cbindgen-0.23-promise): New variables.

Based on work by: John Kehayias <john.kehayias@protonmail.com>.
2022-09-20 10:39:57 -04:00
Mark H Weaver c6b9bf0da2
gnu: Add rust-1.59 to gnuzilla.scm.
This will be needed to build IceCat 102.

* gnu/packages/gnuzilla.scm (rust-1.58-promise, rust-1.59-promise):
New variables.
2022-09-20 10:39:41 -04:00
Efraim Flashner f6e2ca3651
gnu: vim: Update to 9.0.0509.
* gnu/packages/vim.scm (vim): Update to 9.0.0509.
[arguments]: Adjust custom 'patch-absolute-paths phase to adjust
substitutions.
2022-09-20 14:17:17 +03:00
Efraim Flashner 6a2f735983
gnu: tree: Use https.
* gnu/packages/admin.scm (tree)[source]: Use https.
[home-page]: Same.
2022-09-20 13:57:57 +03:00
Efraim Flashner 00537ec17d
gnu: tree: Update to 2.0.4.
* gnu/packages/admin.scm (tree): Update to 2.0.4.
[arguments]: Add phase to fix the version string in the man page.
2022-09-20 13:57:22 +03:00
Efraim Flashner 5a9e3b7c39
gnu: cross: Add default configure-flags.
Reported by Arun Isaac <arunisaac@systemreboot.net>.

* gnu/packages/cross-base.scm (cross)[arguments]: Add a default for
configure-flags so '--target=' is always added.
2022-09-20 11:26:12 +03:00
Trevor Richards 4248fe076e
gnu: Add sbcl-stumpwm-pamixer.
* gnu/packages/wm.scm (sbcl-stumpwm-pamixer): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-09-20 09:15:44 +02:00
Liliana Marie Prikler e58bafcca4
gnu: evolution: Update to 3.46.0.
* gnu/packages/gnome.scm (evolution): Update to 3.46.0.
2022-09-19 21:13:39 +02:00
Liliana Marie Prikler d753a528ce
gnu: evolution-data-server: Update to 3.46.0.
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.46.0.
2022-09-19 21:13:31 +02:00
Liliana Marie Prikler 96c7887864
gnu: gnome-todo: Update to "Endeavour" 42.0.
* gnu/packages/gnome.scm (gnome-todo): Deprecate and rename to...
(endeavour): ... this.
[source]: Use git origin.
* gnu/packages/patches/gnome-todo-libportal.patch: Deleted file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
2022-09-19 20:51:13 +02:00
Artyom V. Poptsov 72fe3c0a35
gnu: Add java-argparse4j.
* gnu/packages/java.scm (java-argparse4j): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-09-19 15:43:28 +02:00
Nicolas Goaziou d845326b5c
Revert "gnu: Add emacs-org-roam-ui."
This reverts commit 1225fe013e.

The package includes minified Javascript. See
<https://issues.guix.gnu.org/issue/57891>.
2022-09-19 12:19:53 +02:00
jgart 4ca4b96e2a
gnu: Add cl-bubble-operator-upwards.
* gnu/packages/lisp-xyz.scm (cl-bubble-operator-upwards,
  ecl-bubble-operator-upwards, sbcl-bubble-operator-upwards): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-09-19 11:11:56 +02:00
Efraim Flashner f9ada7fdc4
gnu: connman: Patch CVE-2022-32392, CVE-2022-32293.
* gnu/packages/connman.scm (connman)[source]: Add patches.
* gnu/packages/patches/connman-CVE-2022-32292.patch,
gnu/packages/patches/connman-CVE-2022-32293-pt1.patch,
gnu/packages/patches/connman-CVE-2022-32293-pt1.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2022-09-19 11:19:49 +03:00
Efraim Flashner 90e316535a
gnu: enlightenment: Update to 0.25.4.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.25.4.
2022-09-19 11:12:44 +03:00
Efraim Flashner 7416ad2cda
gnu: efl: Update to 1.26.3.
* gnu/packages/enlightenment.scm (efl): Update to 1.26.3.
2022-09-19 11:12:41 +03:00
Efraim Flashner c46a96fe33
gnu: luajit: Remove riscv64-linux from supported-systems.
* gnu/packages/lua.scm (luajit)[supported-systems]: Remove riscv64-linux
from the supported-systems.
2022-09-19 10:25:05 +03:00
Olivier Dion 021b2dd0ae
gnu: lttng-tools: Update to 2.13.8.
* gnu/packages/instrumentation.scm (lttng-tools): Update to 2.13.8.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-09-19 09:07:18 +02:00
Olivier Dion 6e47d9f6f4
gnu: lttng-ust: Update to 2.13.4.
* gnu/packages/instrumentation.scm (lttng-ust): Update to 2.13.4.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-09-19 09:07:18 +02:00
Olivier Dion 013545cc84
gnu: lttng-modules: Update to 2.13.5.
* gnu/packages/instrumentation.scm (lttng-modules): Update to 2.13.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-09-19 09:07:18 +02:00
Andrew Tropin f7565101e4
gnu: emacs-next-pgtk: Inherit patches from emacs-next.
* gnu/packages/emacs.scm (emacs-next-pgtk)[source]: Inherit patches from
emacs-next.
2022-09-19 07:23:41 +03:00
Arun Isaac 25adb336bc
gnu: font-ibm-plex: Update to 6.1.1.
* gnu/packages/fonts.scm (font-ibm-plex): Update to 6.1.1.
2022-09-19 03:10:55 +05:30
Nicolas Goaziou 31a56967e2
gnu: hyperrogue: Update to 12.1a.
* gnu/packages/games.scm (hyperrogue): Update to 12.1a.
[source]<origin>: Set upstream to GitHub.
[arguments]: Use G-expressions.
<phases>: Remove INSTALL-DATA phase. Remove trailing #T.
[home-page]: Fix URL.
2022-09-18 19:56:20 +02:00
Liliana Marie Prikler 1066a424dc
gnu: gnome-shell-extension-noannoyance: Update to 16-1-b759d10f.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-noannoyance): Update to
16-1-b759d10f.
2022-09-18 19:19:42 +02:00
Liliana Marie Prikler 9866065714
gnu: gnome-shell-extension-burn-my-windows: Update to 21.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-burn-my-windows): Update to 21.
2022-09-18 19:18:20 +02:00
Liliana Marie Prikler ab565f1e54
gnu: gnome-shell-extension-vertical-overview: Update to 9.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-vertical-overview): Update to 9.
2022-09-18 19:18:20 +02:00
Liliana Marie Prikler f129ef1000
gnu: gnome-shell-extension-dash-to-panel: Update to 51.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-dash-to-panel): Update to 51.
2022-09-18 19:18:20 +02:00
Liliana Marie Prikler 6cf9478d01
gnu: gnome-shell-extension-just-perfection: Update to 22.0.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-just-perfection): Update to 22.0.
2022-09-18 19:18:20 +02:00
Liliana Marie Prikler 26ea91f797
gnu: gnome-shell-extension-dash-to-dock: Update to 73.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-dash-to-dock): Update to 73.
2022-09-18 19:18:20 +02:00