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96501 Commits (83b5c68b442f8b2300d73c1980b784ecd248950d)

Author SHA1 Message Date
Ricardo Wurmus 9b935eaa56
gnu: r-simplifyenrichment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.0.
[propagated-inputs]: Add r-colorspace and r-globaloptions.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 6d2b2e0ad9
gnu: r-shortread: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.54.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 27588f020d
gnu: r-seqpattern: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.28.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 5346b424cc
gnu: r-seqlogo: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.62.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus a260fc5a90
gnu: r-scdblfinder: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.10.0.
[propagated-inputs]: Add r-genomeinfodb, r-genomicranges, r-iranges, r-rsamtools, and
r-rtracklayer.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 021ab21b57
gnu: r-scannotatr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.2.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus ea283a3cda
gnu: r-rtracklayer: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 990ee0c7cc
gnu: r-rsamtools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.12.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus a8c63ab610
gnu: r-rhdf5filters: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.8.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 3c31e7e249
gnu: r-rhdf5: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.40.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus de8b8c86e6
gnu: r-reportingtools: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.36.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 21669d75f6
gnu: r-regioner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 9d05a948ea
gnu: r-rcas: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.22.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 1a873db6b2
gnu: r-rbgl: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.72.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 2b7c604ebf
gnu: r-protgenerics: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus d4201b5f61
gnu: r-pcamethods: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.88.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus e3878bc3c0
gnu: r-organismdbi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d1134b61fd
gnu: r-mzr: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 3eb763c2ba
gnu: r-mzid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.34.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6fe1e2d12
gnu: r-msnid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.30.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6f683b561
gnu: r-msnbase: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 8ec1ca001d
gnu: r-mutationalpatterns: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.6.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 56741afedd
gnu: r-methylkit: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 0cb9ffc4e3
gnu: r-limma: Update to 3.52.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.1.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus cb17da65a5
gnu: r-lfa: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.26.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 2a3372953d
gnu: r-keggrest: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus a6cb10afc3
gnu: r-interactivedisplaybase: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.34.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus cd9b5f0029
gnu: r-impute: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.70.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bb2b2f6543
gnu: r-rhtslib: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.28.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 3daf94f147
gnu: r-hpar: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.38.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 3e1dbcb3bf
gnu: r-gseabase: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.58.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 5c3a303d30
gnu: r-gostats: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.62.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bf93ff28c5
gnu: r-genomicranges: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.48.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus d14aeab8b8
gnu: r-genomicfiles: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.32.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus fa516541c3
gnu: r-genomicfeatures: Update to 1.48.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 1a04133411
gnu: r-genomicalignments: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 4966e9e925
gnu: r-genomeinfodb: Update to 1.32.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.2.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 09ae595016
gnu: r-genomation: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.28.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus b755e0d623
gnu: r-geneoverlap: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.32.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus cb6e76dc63
gnu: r-genefilter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.78.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 3fd4c8f29f
gnu: r-gage: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus b604766021
gnu: r-fastseg: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.42.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 89b669ba0e
gnu: r-ensembldb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 9d030069d4
gnu: r-edger: Update to 3.38.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 1d19d45fe7
gnu: r-edaseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.30.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 12a8b7bca3
gnu: r-dirichletmultinomial: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.38.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 380384a209
gnu: r-diffcyt: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.16.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus ea0c72bed0
gnu: r-dexseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.42.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus a83d8ee1eb
gnu: r-deseq2: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.36.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d29abfbd40
gnu: r-copywriter: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.28.0.
 2022-05-28 23:19:10 +02:00