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46595 Commits (84c86dcebead3b8422bd413fff545e8e76b3f3e6)

Author SHA1 Message Date
Lars-Dominik Braun fe0020609a
gnu: Add r-kutils.
* gnu/packages/cran.scm (r-kutils): New variable.
2020-02-22 20:42:12 +01:00
Lars-Dominik Braun 3be13aa8ca
gnu: Add r-openmx.
* gnu/packages/cran.scm (r-openmx): New variable.
2020-02-22 20:42:12 +01:00
Lars-Dominik Braun da9f63eeea
gnu: Add r-rpf.
* gnu/packages/cran.scm (r-rpf): New variable.
2020-02-22 20:42:12 +01:00
Lars-Dominik Braun d228795210
gnu: Add r-stanheaders.
* gnu/packages/cran.scm (r-stanheaders): New variable.
2020-02-22 20:42:12 +01:00
Lars-Dominik Braun 8b217feb3b
gnu: Add r-regsem.
* gnu/packages/cran.scm (r-regsem): New variable.
2020-02-22 20:42:12 +01:00
Lars-Dominik Braun 27d9764d06
gnu: Add r-semtools.
* gnu/packages/cran.scm (r-semtools): New variable.
2020-02-22 20:42:12 +01:00
Lars-Dominik Braun 3d7115398f
gnu: Add r-sem.
* gnu/packages/cran.scm (r-sem): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 247bd124db
gnu: Add r-matrixcalc.
* gnu/packages/cran.scm (r-matrixcalc): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 8ef53c2255
gnu: Add r-mi.
* gnu/packages/cran.scm (r-mi): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 07f3e9b93c
gnu: Add r-ltm.
* gnu/packages/cran.scm (r-ltm): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 3385908e6b
gnu: Add r-msm.
* gnu/packages/cran.scm (r-msm): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun c56a244004
gnu: Add r-polycor.
* gnu/packages/cran.scm (r-polycor): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 7a19c76f00
gnu: Add r-stm.
* gnu/packages/cran.scm (r-stm): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun d94d34c4a5
gnu: Add r-topicmodels.
* gnu/packages/cran.scm (r-topicmodels): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 09df4c2aa2
gnu: Add r-quanteda.
* gnu/packages/cran.scm (r-quanteda): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun e525c866d3
gnu: Add r-snowballc.
* gnu/packages/cran.scm (r-snowballc): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 982a9fb6c6
gnu: Add r-spacyr.
* gnu/packages/cran.scm (r-spacyr): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 6daed861a6
gnu: Add r-stopwords.
* gnu/packages/cran.scm (r-stopwords): New variable.
2020-02-22 20:42:11 +01:00
Lars-Dominik Braun 4f53ac4b9b
gnu: Add r-isocodes.
* gnu/packages/cran.scm (r-isocodes): New variable.
2020-02-22 20:42:10 +01:00
Lars-Dominik Braun 38339c4cab
gnu: Add r-proxyc.
* gnu/packages/cran.scm (r-proxyc): New variable.
2020-02-22 20:42:10 +01:00
Lars-Dominik Braun 532b318020
gnu: Add r-xmisc.
* gnu/packages/cran.scm (r-xmisc): New variable.
2020-02-22 20:42:10 +01:00
Lars-Dominik Braun dfecd5598e
gnu: Add r-forecast.
* gnu/packages/cran.scm (r-forecast): New variable.
2020-02-22 20:42:10 +01:00
Lars-Dominik Braun 3ec74f9de9
gnu: Add r-fracdiff.
* gnu/packages/cran.scm (r-fracdiff): New variable.
2020-02-22 20:42:03 +01:00
Brian Leung 5508d9a8d7
gnu: Add emacs-persp-mode.
* gnu/packages/emacs-xyz.scm (emacs-persp-mode): New variable.
2020-02-22 10:53:49 -08:00
Thomas Danckaert 7dc0f1d5a8
gnu: qdbm: Fix segfault during tests.
gnu/packages/databses.scm (qdbm): Add "CFLAGS=-fPIC" to make-flags.
2020-02-22 17:38:29 +01:00
Tobias Geerinckx-Rice 582a79d3a9
gnu: Add unoconv.
* gnu/packages/libreoffice.scm (unoconv): New public variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-02-22 15:31:01 +01:00
Jean-Baptiste Note e36826b2ba
gnu: emacs-gnuplot: Install to site-lisp instead of guix.d.
Fixes <https://bugs.gnu.org/39536>.

This is a followup to 65a7dd2950.

* gnu/packages/emacs-xyz.scm (emacs-gnuplot)[arguments]: Change ELISP-DIR.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-02-22 12:17:35 +01:00
Dimakakos Dimos eb85995738
gnu: Add cl-lquery.
* gnu/packages/lisp-xyz.scm (sbcl-lquery, cl-lquery, ecl-lquery): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-02-22 10:40:36 +01:00
Dimakakos Dimos cfc9004e3f
gnu: Add cl-clss.
* gnu/packages/lisp-xyz.scm (cl-clss, sbcl-clss, ecl-clss): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-02-22 10:31:12 +01:00
Tobias Geerinckx-Rice 3c4c60fa79
gnu: bind: Update to 9.16.0.
* gnu/packages/dns.scm (isc-bind): Update to 9.16.0.
[inputs]: Add libuv.
[native-inputs]: Add pkg-config.  Remove net-tools.
[arguments]: Remove obsolete --with-openssl= from #:configure-flags.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice 3ef91e1534
gnu: Use HTTPS for hackage.haskell.org home pages.
* gnu/packages/haskell-xyz.scm (ghc-network-byte-order)
(ghc-base-compat-batteries, ghc-regex-tdfa-text, ghc-sdl2-image)
(ghc-language-glsl, ghc-sop-core, ghc-libffi, ghc-path, ghc-io-streams)
(ghc-openssl-streams, ghc-haskell-lexer, ghc-prettyclass, ghc-ifelse)
(ghc-sdl2-mixer, ghc-errorcall-eq-instance, ghc-filepath-bytestring)
(ghc-refact, ghc-pointedlist, ghc-string-qq, ghc-tls-session-manager)
(ghc-magic, ghc-exactprint, ghc-inline-c, ghc-infer-license)
(ghc-unagi-chan)[home-page]: Use HTTPS.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice d5840fec16
gnu: emacs-recent-addresses: Use HTTPS home page.
* gnu/packages/emacs-xyz.scm (emacs-recent-addresses)[home-page]: Use HTTPS.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice f0db77796b
gnu: ecl-clx: Use HTTPS home page.
* gnu/packages/lisp-xyz.scm (ecl-clx)[home-page]: Use HTTPS.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice 1b4d40cf7b
gnu: java-plexus-utils: Use HTTPS home page.
* gnu/packages/java.scm (java-plexus-utils)[home-page]: Use HTTPS.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice 2b62f5d0f7
gnu: ghc-xml: Update home page.
Before code.galois.com vanished, it redirected here.

* gnu/packages/haskell-xyz.scm (ghc-xml)[home-page]: Use new (HTTPS) URI.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice 60783303ed
gnu: ruby-thin: Update home page.
* gnu/packages/ruby.scm (ruby-thin)[home-page]: Use new (HTTPS) URI.
2020-02-22 00:16:15 +01:00
Tobias Geerinckx-Rice 9137e66ba9
gnu: ghc-tagsoup: Update home page.
* gnu/packages/haskell-web.scm (ghc-tagsoup)[home-page]: Use new (HTTPS)
URI
2020-02-22 00:16:14 +01:00
Jakub Kądziołka c080beb9c7
gnu: choqok: Update to 1.7.0.
* gnu/packages/kde-internet.scm (choqok): Update to 1.7.0.
  (inputs): Add purpose, qtnetworkauth.
  (source): Don't apply patch.
* gnu/packages/patches/choqok-Fix-building-under-Qt-5.13.patch: Remove
  (no longer needed).
2020-02-22 00:11:41 +01:00
Amin Bandali 76a8dc3ee2
gnu: Add font-vazir.
* gnu/packages/fonts.scm (font-vazir): New variable.
2020-02-21 16:24:08 -05:00
Jack Hill fd62167464
gnu: gnome-shell-extension-paperwm: Install compiled gschemas.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm)[arguments]:
Install compiled gschemas.

Signed-off-by: Alex Griffin <a@ajgrf.com>
2020-02-21 12:45:32 -06:00
Tanguy Le Carrour d2b5cdfef7
gnu: profanity: Update to 0.8.1.
* gnu/packages/messaging.scm (profanity): Update to 0.8.1.
2020-02-21 19:34:18 +01:00
Nicolas Goaziou 371a647e8b
gnu: chroma: Fix description.
* gnu/packages/games.scm (chroma)[descrption]: Add missing space and fix
indentation.
2020-02-21 19:25:52 +01:00
Tobias Geerinckx-Rice 239d3e9cef
gnu: libfprint, fprintd: Update to 1.90.1.
* gnu/packages/freedesktop.scm (libfprint): Update to 1.90.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[build-system]: Use Meson.
[arguments]: Adapt #:configure-flags.
[native-inputs]: Add eudev, glib:bin, gobject-introspection,
and gtk-doc.
[inputs]: Replace libusb with gusb.
(fprintd): Update to 1.90.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[build-system]: Use Meson.
[arguments]: Add directory #:configure-flags.
Work around many exciting new Meson features.
[native-inputs]: Replace intltool with gettext-minimal.
Add glib:bin, libxslt, and perl.
[inputs]: Add elogind and polkit, as well as gusb, nss, and pixman.
2020-02-21 18:33:40 +01:00
Tobias Geerinckx-Rice 50f02ced92
gnu: Update fprintd home pages.
* gnu/packages/freedesktop.scm (libfprint, fprintd)[home-page]: Update.
2020-02-21 18:33:40 +01:00
Tobias Geerinckx-Rice d5f344c987
gnu: libreoffice: Fix ‘soffice’ in a pure environment.
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Refer to grep
and coreutils by absolute file name in the soffice launcher script.
2020-02-21 18:33:40 +01:00
Tobias Geerinckx-Rice dd6114dfc5
gnu: containerd: Use HTTPS home page.
* gnu/packages/docker.scm (containerd)[home-page]: Use HTTPS.
2020-02-21 18:33:40 +01:00
Tobias Geerinckx-Rice e11639f385
gnu: openh264: Use HTTPS home page.
* gnu/packages/video.scm (openh264)[home-page]: Use HTTPS.
2020-02-21 18:33:40 +01:00
Tobias Geerinckx-Rice 3602de332b
gnu: scons: Use HTTPS home page.
* gnu/packages/python-xyz.scm (scons)[home-page]: Use HTTPS.
2020-02-21 18:33:39 +01:00
Tobias Geerinckx-Rice 52888f52e8
gnu: python-pycrypto: Update home page.
* gnu/packages/python-crypto.scm (python-pycrypto)[home-page]: Follow
(HTTPS) redirection.
2020-02-21 18:33:39 +01:00
Tobias Geerinckx-Rice 3fbb7bec1c
gnu: proj: Update home page.
* gnu/packages/geo.scm (proj)[home-page]: Use new (HTTPS) domain.
2020-02-21 18:33:39 +01:00
Tobias Geerinckx-Rice 92a79fee20
gnu: ghc-splitmix: Use HTTPS home page.
* gnu/packages/haskell-xyz.scm (ghc-splitmix)[home-page]: Use HTTPS.
2020-02-21 18:33:38 +01:00
Tobias Geerinckx-Rice 018b72d724
gnu: rust-tempfile: Use HTTPS home page.
* gnu/packages/crates-io.scm (rust-tempfile)[home-page]: Use HTTPS.
2020-02-21 18:33:37 +01:00
Tobias Geerinckx-Rice 2f35985c77
gnu: python-sympy: Use HTTPS home page.
* gnu/packages/python-xyz.scm (python-sympy)[home-page]: Use HTTPS.
2020-02-21 18:33:37 +01:00
Tobias Geerinckx-Rice 4b17f71de4
gnu: emacs-rotate-text: Use HTTPS home page.
* gnu/packages/emacs-xyz.scm (emacs-rotate-text)[home-page]: Use HTTPS.
2020-02-21 18:33:37 +01:00
Tobias Geerinckx-Rice 059aa850e9
gnu: rust-yaml-rust: Use HTTPS home page.
* gnu/packages/crates-io.scm (rust-yaml-rust)[home-page]: Use HTTPS.
2020-02-21 18:33:37 +01:00
Tobias Geerinckx-Rice 9c99cb2276
gnu: grisbi: Use HTTPS home page.
* gnu/packages/finance.scm (grisbi)[home-page]: Use HTTPS.
2020-02-21 18:33:36 +01:00
Tobias Geerinckx-Rice 2ea6d49913
gnu: calibre: Use HTTPS home page.
* gnu/packages/ebook.scm (calibre)[home-page]: Use HTTPS.
2020-02-21 18:33:35 +01:00
Tanguy Le Carrour 536cc4aae5
gnu: nim: Update to 1.0.6.
* gnu/packages/nim.scm (nim): Update to 1.0.6.
2020-02-21 17:40:41 +01:00
Jack Hill 60d5ad8087
gnu: gnome-shell-extension-paperwm: Recompile schemas.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm)
[source]: Remove gschemas.compiled in a snippet.
[arguments]: Add compile-schemas phase.
[native-inputs]: Add glib.

Signed-off-by: Alex Griffin <a@ajgrf.com>
2020-02-21 08:25:45 -06:00
Guillaume Le Vaillant a3f6c41067
gnu: Add cl-pzmq.
* gnu/packages/lisp-xyz.scm (sbcl-pzmq, cl-pzmq, ecl-pzmq): New variables.
2020-02-21 15:00:58 +01:00
Paul Garlick b24d523e74
gnu: highlight: Build perl bindings.
* gnu/packages/pretty-print.scm (highlight)[native-inputs]: Add swig.
[inputs]: Add perl.
[arguments]: Specify lua version for pkg-config command, add
'install-perl-bindings' phase.
2020-02-21 13:09:28 +00:00
Andreas Enge b457f3cc16
gnu: Add vinci.
* gnu/packages/maths.scm (vinci): New variable.
2020-02-21 13:30:25 +01:00
Alex Griffin fb18f32e5a
gnu: Add gnome-shell-extension-paperwm.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm): New variable.
2020-02-21 10:53:12 +01:00
Pierre Neidhardt 11386e1801
gnu: gcide: Use the copy-build-system.
* gnu/packages/dictionaries.scm (gcide2)[build-system]: Use the
  copy-build-system.
2020-02-21 10:53:12 +01:00
Efraim Flashner 6ca4e98c56
gnu: tilda: Update to 1.5.0.
* gnu/packages/terminals.scm (tilda): Update to 1.5.0.
2020-02-21 09:15:23 +02:00
Efraim Flashner fa9f5df7c4
gnu: subversion: Don't build static libraries.
This drops the size of the package by about 27%.

* gnu/packages/version-control.scm (subversion)[arguments]: Add
configure-flag to not build static libraries.
2020-02-21 08:50:48 +02:00
Alex Sassmannshausen 2940b3e16c
gnu: php: Update to 7.4.3.
* gnu/packages/php.scm (php): Update to 7.4.3.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-02-21 02:44:25 +01:00
Jakub Kądziołka bb90beb5bf
gnu: corrode: Use git-file-name.
* gnu/packages/haskell-apps.scm (corrode): Use git-file-name.
2020-02-20 22:46:40 +01:00
Jakub Kądziołka 779ce96faf
gnu: libjit: Use git-file-name
* gnu/packages/assembly.scm (libjit): Use git-file-name.
2020-02-20 22:45:33 +01:00
Jakub Kądziołka d47f96307b
gnu: guile-gcrypt: Use git-file-name
* gnu/packages/gnupg.scm (guile-gcrypt): Use git-file-name.
2020-02-20 22:45:33 +01:00
Jakub Kądziołka 123334fadd
gnu: ath9k-htc-firmware, b43-tools: Use git-file-name.
* gnu/packages/firmware.scm (ath9k-htc-firmware): Use git-file-name.
  (b43-tools): Likewise.
2020-02-20 22:45:33 +01:00
Jakub Kądziołka ec299312a0
gnu: fpga.scm: Use git-version and git-file-name where appropriate.
* gnu/packages/fpga.scm (abc): Use git-version. The uri is using an
  autogenerated commit package, it would ideally use git-fetch. The
  canonical repository is now on GitHub, but the old commit ID is not
  present. This means that changing the origin is best done together
  with an update.
  (icestorm): Use git-version, git-file-name.
  (arachne-pnr): Use git-file-name.
2020-02-20 22:45:33 +01:00
Jakub Kądziołka fb36ac61d4
gnu: ntk: Use git-file-name.
* gnu/packages/fltk.scm (ntk): Use git-file-name.
2020-02-20 22:45:32 +01:00
Kyle Meyer d4160848a0
gnu: git-annex: Update to 7.20200219.
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20200219.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-02-20 16:30:29 -05:00
Leo Famulari cbfa8bb313
gnu: perl-image-exiftool: Update to 11.85.
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.85.
2020-02-20 16:30:22 -05:00
Leo Famulari 0dc1f651a8
gnu: RawTherapee: Update to 5.8.
* gnu/packages/photo.scm (rawtherapee): Update to 5.8.
2020-02-20 15:00:28 -05:00
Lars-Dominik Braun ef30ddb2c2
gnu: Add Kerberos support to libssh
* gnu/packages/ssh.scm (libssh)[inputs]: Depend on mit-krb5

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-02-20 11:14:39 +01:00
Leo Famulari 9b2310a0b4
gnu: certbot, python-acme: Update to 1.2.0.
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.2.0.
2020-02-19 22:51:57 -05:00
Mark H Weaver 3be96aa9d9
gnu: linux-libre: Update to 5.4.21.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.21.
(linux-libre-5.4-pristine-source): Update hash.
2020-02-19 22:32:39 -05:00
Mark H Weaver bfab5ce9c4
gnu: linux-libre@4.19: Update to 4.19.105.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.105.
(linux-libre-4.19-pristine-source): Update hash.
2020-02-19 22:31:21 -05:00
Julien Lepiller 6dde98c3d9
gnu: libevent: Split into two outputs.
This removes python and its dependencies from the libevent closure,
reducing it from 180MB to 70MB.

* gnu/packages/libevent.scm (libevent): Add bin output.
2020-02-20 02:09:56 +01:00
Tobias Geerinckx-Rice 00c967f6a4
gnu: js-selectize: Use HTTPS home page.
* gnu/packages/javascript.scm (js-selectize)[home-page]: Use HTTPS.
2020-02-19 23:48:26 +01:00
Tobias Geerinckx-Rice 082c733c1d
gnu: python-scikit-image: Use HTTPS home page.
* gnu/packages/python-science.scm (python-scikit-image)[home-page]: Use HTTPS.
2020-02-19 23:48:15 +01:00
Tobias Geerinckx-Rice 1dc184b441
gnu: transset-df: Use HTTPS home page.
* gnu/packages/xorg.scm (transset-df)[home-page]: Use HTTPS.
2020-02-19 23:43:40 +01:00
Tobias Geerinckx-Rice 5ee0e01320
gnu: munge: Update to 0.5.14.
* gnu/packages/admin.scm (munge): Update to 0.5.14.
[source]: Expand snippet.
[arguments]: Continue installing pkg-config file.
Add new ‘skip-failing-tests’ for the new test suite.
2020-02-19 23:43:40 +01:00
Tobias Geerinckx-Rice 7039b199a2
gnu: crypto++: Update to 8.2.0.
* gnu/packages/crypto.scm (crypto++): Update to 8.2.0.
2020-02-19 23:43:40 +01:00
Tobias Geerinckx-Rice e54b381dd4
gnu: crypto++: Returt #t from all phases.
* gnu/packages/crypto.scm (crypto++)[arguments]: Return #t from
‘install-pkg-config’.
2020-02-19 23:43:39 +01:00
Tobias Geerinckx-Rice bfa3caa2fb
gnu: crypto++: Build in parallel.
* gnu/packages/crypto.scm (crypto++)[arguments]: Make ‘build-shared’
the main ‘build’ phase.  Respect MAKE-FLAGS and PARALLEL-JOB-COUNT.
2020-02-19 23:43:39 +01:00
Tobias Geerinckx-Rice 3ca6c1a720
gnu: crypto++: Don't hard-code VERSION.
* gnu/packages/crypto.scm (crypto++)[arguments]: Use package VERSION.
2020-02-19 23:43:39 +01:00
Tobias Geerinckx-Rice e48390cb20
gnu: libbytesize: Update to 2.2.
* gnu/packages/c.scm (libbytesize): Update to 2.2.
2020-02-19 23:43:39 +01:00
Ricardo Wurmus f55084b782
gnu: r-scran: Update to 1.14.6.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.6.
2020-02-19 23:00:58 +01:00
Ricardo Wurmus 9374f550e6
gnu: r-hdf5array: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.2.
2020-02-19 23:00:53 +01:00
Ricardo Wurmus f2b9f41234
gnu: r-gviz: Update to 1.30.3.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.3.
2020-02-19 23:00:48 +01:00
Ricardo Wurmus 3f4f3a7822
gnu: r-rhtslib: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.1.
2020-02-19 23:00:42 +01:00
Ricardo Wurmus f0e330d68b
gnu: r-genomicfeatures: Update to 1.38.2.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.2.
2020-02-19 23:00:36 +01:00
Ricardo Wurmus 154babb9c4
gnu: r-rsamtools: Update to 2.2.2.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.2.
2020-02-19 23:00:31 +01:00
Ricardo Wurmus e0ca7b3a14
gnu: r-limma: Update to 3.42.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.2.
2020-02-19 23:00:25 +01:00
Ricardo Wurmus 0f72b7abd8
gnu: r-shortread: Update to 1.44.3.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.3.
2020-02-19 23:00:20 +01:00
Ricardo Wurmus d66901e2c3
gnu: r-depecher: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
2020-02-19 23:00:13 +01:00
Ricardo Wurmus f607098f05
gnu: r-mixomics: Update to 6.10.8.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
2020-02-19 23:00:08 +01:00
Ricardo Wurmus e01fa33baa
gnu: r-rsubread: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
2020-02-19 23:00:02 +01:00
Ricardo Wurmus f86549cbb6
gnu: r-atacseqqc: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
2020-02-19 22:59:56 +01:00
Ricardo Wurmus 776e98fe05
gnu: r-heatplus: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
2020-02-19 22:59:49 +01:00
Ricardo Wurmus effbf7d986
gnu: r-biocsingular: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
2020-02-19 22:59:44 +01:00
Ricardo Wurmus b7e86efd3b
gnu: r-inspect: Update to 1.16.3.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
2020-02-19 22:59:35 +01:00
Ricardo Wurmus e40d6c4c7a
gnu: r-biclust: Update to 2.0.2.
* gnu/packages/cran.scm (r-biclust): Update to 2.0.2.
2020-02-19 21:19:55 +01:00
Ricardo Wurmus 1a060eabf8
gnu: r-tolerance: Update to 2.0.0.
* gnu/packages/cran.scm (r-tolerance): Update to 2.0.0.
[propagated-inputs]: Add r-mass.
2020-02-19 21:19:39 +01:00
Ricardo Wurmus a3d80e6212
gnu: r-imager: Update to 0.42.1.
* gnu/packages/cran.scm (r-imager): Update to 0.42.1.
[propagated-inputs]: Remove r-cairo and r-plyr.
2020-02-19 21:19:04 +01:00
Ricardo Wurmus 90d499782e
gnu: r-actigraphy: Update to 1.4.0.
* gnu/packages/cran.scm (r-actigraphy): Update to 1.4.0.
[propagated-inputs]: Remove r-sdmtools.
2020-02-19 21:18:30 +01:00
Ricardo Wurmus 46d833ef98
gnu: r-actfrag: Update to 0.1.1.
* gnu/packages/cran.scm (r-actfrag): Update to 0.1.1.
2020-02-19 21:18:22 +01:00
Ricardo Wurmus fd483cb370
gnu: r-gamlss: Update to 5.1-6.
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-6.
2020-02-19 21:18:14 +01:00
Ricardo Wurmus 1a3a1d66d6
gnu: r-randtoolbox: Update to 1.30.1.
* gnu/packages/cran.scm (r-randtoolbox): Update to 1.30.1.
2020-02-19 21:18:07 +01:00
Ricardo Wurmus e7705bc267
gnu: r-showtext: Update to 0.7-1.
* gnu/packages/cran.scm (r-showtext): Update to 0.7-1.
2020-02-19 21:18:00 +01:00
Ricardo Wurmus 8343dcf1aa
gnu: r-abcrlda: Update to 1.0.2.
* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.2.
2020-02-19 21:17:52 +01:00
Ricardo Wurmus 6abb66d1be
gnu: r-bios2cor: Update to 2.1.
* gnu/packages/cran.scm (r-bios2cor): Update to 2.1.
2020-02-19 21:17:43 +01:00
Ricardo Wurmus 5130dd52eb
gnu: r-parameters: Update to 0.5.0.
* gnu/packages/cran.scm (r-parameters): Update to 0.5.0.
2020-02-19 21:17:35 +01:00
Ricardo Wurmus 469c484afc
gnu: r-assertr: Update to 2.7.
* gnu/packages/cran.scm (r-assertr): Update to 2.7.
2020-02-19 21:17:27 +01:00
Ricardo Wurmus 16703ceaea
gnu: r-leiden: Update to 0.3.3.
* gnu/packages/cran.scm (r-leiden): Update to 0.3.3.
2020-02-19 21:17:18 +01:00
Ricardo Wurmus 0f303adfe5
gnu: r-styler: Update to 1.3.1.
* gnu/packages/cran.scm (r-styler): Update to 1.3.1.
[propagated-inputs]: Add r-r-cache.
2020-02-19 21:17:02 +01:00
Ricardo Wurmus ff92cd1de4
gnu: r-lintr: Update to 2.0.1.
* gnu/packages/cran.scm (r-lintr): Update to 2.0.1.
[propagated-inputs]: Remove r-stringdist.
2020-02-19 21:16:38 +01:00
Ricardo Wurmus 6e94ba488c
gnu: r-ggraph: Update to 2.0.1.
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.1.
2020-02-19 21:16:27 +01:00
Ricardo Wurmus 2d1788f48d
gnu: r-rmetasim: Update to 3.1.14.
* gnu/packages/cran.scm (r-rmetasim): Update to 3.1.14.
2020-02-19 21:16:20 +01:00
Ricardo Wurmus 886cd33460
gnu: r-sf: Update to 0.8-1.
* gnu/packages/cran.scm (r-sf): Update to 0.8-1.
2020-02-19 21:16:11 +01:00
Ricardo Wurmus ffe45e0aa0
gnu: r-deldir: Update to 0.1-25.
* gnu/packages/cran.scm (r-deldir): Update to 0.1-25.
2020-02-19 21:16:03 +01:00
Ricardo Wurmus 7227fd4388
gnu: r-spdata: Update to 0.3.3.
* gnu/packages/cran.scm (r-spdata): Update to 0.3.3.
[propagated-inputs]: Add r-raster and r-sp.
2020-02-19 21:15:46 +01:00
Ricardo Wurmus 3f1c75ee3a
gnu: r-picante: Update to 1.8.1.
* gnu/packages/cran.scm (r-picante): Update to 1.8.1.
2020-02-19 21:15:37 +01:00
Ricardo Wurmus 5e1c84e5f0
gnu: r-repr: Update to 1.1.0.
* gnu/packages/cran.scm (r-repr): Update to 1.1.0.
2020-02-19 21:15:30 +01:00
Ricardo Wurmus 50c0f22fad
gnu: r-gamlss-dist: Update to 5.1-6.
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-6.
2020-02-19 21:15:20 +01:00
Ricardo Wurmus 2d5c38f500
gnu: r-blockmodeling: Update to 0.3.6.
* gnu/packages/cran.scm (r-blockmodeling): Update to 0.3.6.
[propagated-inputs]: Remove r-doparallel, r-dorng, and r-foreach.
2020-02-19 21:14:52 +01:00
Ricardo Wurmus 8150ebedb8
gnu: r-rsvd: Update to 1.0.3.
* gnu/packages/cran.scm (r-rsvd): Update to 1.0.3.
2020-02-19 21:14:45 +01:00
Ricardo Wurmus ecf7477b6e
gnu: r-mcmc: Update to 0.9-6.1.
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-6.1.
2020-02-19 21:14:36 +01:00
Ricardo Wurmus 8f5468e7e7
gnu: r-etm: Update to 1.0.5.1.
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.1.
2020-02-19 21:14:24 +01:00
Ricardo Wurmus dbfbef8729
gnu: r-protviz: Update to 0.6.0.
* gnu/packages/cran.scm (r-protviz): Update to 0.6.0.
2020-02-19 21:14:16 +01:00
Ricardo Wurmus 4e977a9bf2
gnu: r-genenet: Update to 1.2.14.
* gnu/packages/cran.scm (r-genenet): Update to 1.2.14.
2020-02-19 21:14:08 +01:00
Ricardo Wurmus 30ef5e8205
gnu: r-fields: Update to 10.3.
* gnu/packages/cran.scm (r-fields): Update to 10.3.
2020-02-19 21:13:59 +01:00
Ricardo Wurmus fb413fff5c
gnu: r-rnifti: Update to 1.1.0.
* gnu/packages/cran.scm (r-rnifti): Update to 1.1.0.
2020-02-19 21:13:48 +01:00
Ricardo Wurmus 846ec72241
gnu: r-waveslim: Update to 1.7.5.2.
* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.2.
2020-02-19 21:13:39 +01:00
Ricardo Wurmus 0c13ce8c72
gnu: r-ks: Update to 1.11.7.
* gnu/packages/cran.scm (r-ks): Update to 1.11.7.
2020-02-19 21:13:31 +01:00
Ricardo Wurmus 0227947fbf
gnu: r-rgl: Update to 0.100.47.
* gnu/packages/cran.scm (r-rgl): Update to 0.100.47.
2020-02-19 21:13:20 +01:00
Ricardo Wurmus 969c933fb9
gnu: r-weights: Update to 1.0.1.
* gnu/packages/cran.scm (r-weights): Update to 1.0.1.
2020-02-19 21:13:07 +01:00
Ricardo Wurmus 7bc252902d
gnu: r-summarytools: Update to 0.9.5.
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.5.
[propagated-inputs]: Add r-base64enc; remove r-rcurl.
2020-02-19 21:12:39 +01:00
Ricardo Wurmus a8a261b0f1
gnu: r-remotes: Update to 2.1.1.
* gnu/packages/cran.scm (r-remotes): Update to 2.1.1.
2020-02-19 21:12:26 +01:00
Ricardo Wurmus 1f4ec0d578
gnu: r-ggeffects: Update to 0.14.1.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.1.
[propagated-inputs]: Remove r-magrittr, r-purrr, and r-sjmisc.
2020-02-19 21:11:50 +01:00
Ricardo Wurmus 155f188634
gnu: r-performance: Update to 0.4.4.
* gnu/packages/cran.scm (r-performance): Update to 0.4.4.
2020-02-19 21:11:40 +01:00
Ricardo Wurmus e9f6089744
gnu: r-bayestestr: Update to 0.5.2.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.2.
2020-02-19 21:11:17 +01:00
Ricardo Wurmus 0fb7f0acca
gnu: r-glmmtmb: Update to 1.0.0.
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.0.0.
2020-02-19 21:11:02 +01:00
Ricardo Wurmus f09351f4c5
gnu: r-sjstats: Update to 0.17.9.
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.9.
2020-02-19 21:10:45 +01:00
Ricardo Wurmus 2be78b58a4
gnu: r-emmeans: Update to 1.4.4.
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.4.
2020-02-19 21:10:36 +01:00
Ricardo Wurmus 59987505c0
gnu: r-raster: Update to 3.0-12.
* gnu/packages/cran.scm (r-raster): Update to 3.0-12.
2020-02-19 21:10:20 +01:00
Ricardo Wurmus f0e83d6856
gnu: r-ggformula: Update to 0.9.3.
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.3.
[propagated-inputs]: Add r-ggforce.
2020-02-19 21:09:53 +01:00
Ricardo Wurmus 0048894f33
gnu: r-doby: Update to 4.6-4.1.
* gnu/packages/cran.scm (r-doby): Update to 4.6-4.1.
2020-02-19 21:09:42 +01:00
Ricardo Wurmus bfbb33e8f8
gnu: r-flextable: Update to 0.5.8.
* gnu/packages/cran.scm (r-flextable): Update to 0.5.8.
2020-02-19 21:09:30 +01:00
Ricardo Wurmus 544366842b
gnu: r-sjlabelled: Update to 1.1.3.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.3.
2020-02-19 21:09:20 +01:00
Ricardo Wurmus cedf4aa48c
gnu: r-insight: Update to 0.8.1.
* gnu/packages/cran.scm (r-insight): Update to 0.8.1.
2020-02-19 21:09:10 +01:00
Ricardo Wurmus 8151a35812
gnu: r-factominer: Update to 2.2.
* gnu/packages/cran.scm (r-factominer): Update to 2.2.
2020-02-19 21:08:59 +01:00
Ricardo Wurmus d99a211d2d
gnu: r-ggpubr: Update to 0.2.5.
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.5.
2020-02-19 21:08:47 +01:00
Ricardo Wurmus 398c8be0a2
gnu: r-learnr: Update to 0.10.1.
* gnu/packages/cran.scm (r-learnr): Update to 0.10.1.
2020-02-19 21:08:36 +01:00
Ricardo Wurmus ab06092c5e
gnu: r-renv: Update to 0.9.3.
* gnu/packages/cran.scm (r-renv): Update to 0.9.3.
2020-02-19 21:08:24 +01:00
Ricardo Wurmus de20b0f271
gnu: r-vim: Update to 5.1.0.
* gnu/packages/cran.scm (r-vim): Update to 5.1.0.
[propagated-inputs]: Add r-magrittr.
2020-02-19 21:08:00 +01:00
Ricardo Wurmus 2d37face53
gnu: r-np: Update to 0.60-10.
* gnu/packages/cran.scm (r-np): Update to 0.60-10.
2020-02-19 21:07:43 +01:00
Ricardo Wurmus 2097da3e8c
gnu: r-processx: Update to 3.4.2.
* gnu/packages/cran.scm (r-processx): Update to 3.4.2.
2020-02-19 21:07:28 +01:00
Ricardo Wurmus fa27e4d2ba
gnu: r-laeken: Update to 0.5.1.
* gnu/packages/cran.scm (r-laeken): Update to 0.5.1.
2020-02-19 21:07:18 +01:00
Ricardo Wurmus 42e45862ea
gnu: r-performanceanalytics: Update to 2.0.4.
* gnu/packages/cran.scm (r-performanceanalytics): Update to 2.0.4.
2020-02-19 21:07:07 +01:00
Ricardo Wurmus aed2fe3f77
gnu: r-rmysql: Update to 0.10.19.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.19.
2020-02-19 21:06:54 +01:00
Ricardo Wurmus e92370a10e
gnu: r-drr: Update to 0.0.4.
* gnu/packages/cran.scm (r-drr): Update to 0.0.4.
2020-02-19 21:06:43 +01:00
Ricardo Wurmus 30e1fff333
gnu: r-emdbook: Update to 1.3.12.
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.12.
[propagated-inputs]: Remove r-rcpp.
2020-02-19 21:06:18 +01:00
Ricardo Wurmus d05c224c3b
gnu: r-bbmle: Update to 1.0.23.1.
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.23.1.
2020-02-19 21:06:04 +01:00
Ricardo Wurmus 4332a46ca7
gnu: r-dendextend: Update to 1.13.3.
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.3.
2020-02-19 21:05:48 +01:00
Ricardo Wurmus 01fb586285
gnu: r-ps: Update to 1.3.2.
* gnu/packages/cran.scm (r-ps): Update to 1.3.2.
2020-02-19 21:05:32 +01:00
Ricardo Wurmus a7474115bf
gnu: r-rgooglemaps: Update to 1.4.5.3.
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.3.
[propagated-inputs]: Add r-sp.
2020-02-19 21:04:51 +01:00
Ricardo Wurmus 437825dd0a
gnu: r-mapproj: Update to 1.2.7.
* gnu/packages/cran.scm (r-mapproj): Update to 1.2.7.
2020-02-19 21:04:29 +01:00
Ricardo Wurmus 256761021c
gnu: r-jsonlite: Update to 1.6.1.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.1.
2020-02-19 21:03:05 +01:00
Ricardo Wurmus ed5e514dff
gnu: r-callr: Update to 3.4.2.
* gnu/packages/cran.scm (r-callr): Update to 3.4.2.
2020-02-19 21:02:52 +01:00
Ricardo Wurmus ca61ca930d
gnu: r-mixtools: Update to 1.2.0.
* gnu/packages/statistics.scm (r-mixtools): Update to 1.2.0.
[propagated-inputs]: Add r-kernlab.
2020-02-19 21:02:31 +01:00
Ricardo Wurmus c06d6ebdad
gnu: r-hexbin: Update to 1.28.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.1.
[native-inputs]: Add r-knitr.
2020-02-19 21:02:04 +01:00
Ricardo Wurmus d6d08891f4
gnu: r-tidyselect: Update to 1.0.0.
* gnu/packages/statistics.scm (r-tidyselect): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis and r-vctrs; remove r-rcpp.
2020-02-19 21:01:33 +01:00
Ricardo Wurmus 98319975bf
gnu: r-ade4: Update to 1.7-15.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-15.
[propagated-inputs]: Add r-pixmap and r-sp.
2020-02-19 21:01:17 +01:00
Ricardo Wurmus 9970c25eb9
gnu: r-dplyr: Update to 0.8.4.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.4.
[propagated-inputs]: Add r-ellipsis.
2020-02-19 21:00:57 +01:00
Ricardo Wurmus b8fc0678e7
gnu: r-directlabels: Update to 2020.1.31.
* gnu/packages/statistics.scm (r-directlabels): Update to 2020.1.31.
2020-02-19 21:00:29 +01:00
Ricardo Wurmus 0394d994b5
gnu: r-sn: Update to 1.5-5.
* gnu/packages/statistics.scm (r-sn): Update to 1.5-5.
2020-02-19 21:00:19 +01:00
Ricardo Wurmus 1f029f7f11
gnu: r-mnormt: Update to 1.5-6.
* gnu/packages/statistics.scm (r-mnormt): Update to 1.5-6.
2020-02-19 21:00:08 +01:00
Ricardo Wurmus c0d106acab
gnu: r-rcppprogress: Update to 0.4.2.
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.2.
[propagated-inputs]: Remove r-devtools and r-rcpp.
2020-02-19 20:59:46 +01:00
Ricardo Wurmus c4c3dfdabb
gnu: r-fpc: Update to 2.2-5.
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-5.
2020-02-19 20:59:33 +01:00
Ricardo Wurmus fdfcde2a49
gnu: r-trimcluster: Update to 0.1-5.
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.1-5.
2020-02-19 20:59:25 +01:00
Ricardo Wurmus 9227b59d0d
gnu: r-statmod: Update to 1.4.34.
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.34.
2020-02-19 20:59:12 +01:00
Ricardo Wurmus 31a0be58d2
gnu: r-sfsmisc: Update to 1.1-5.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-5.
2020-02-19 20:59:01 +01:00
Ricardo Wurmus f1c7e1960c
gnu: r-hmisc: Update to 4.3-1.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.3-1.
2020-02-19 20:58:52 +01:00
Ricardo Wurmus a9f21dd9d4
gnu: r-plotly: Update to 4.9.2.
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.
2020-02-19 20:58:44 +01:00
Ricardo Wurmus 460ff75a88
gnu: r-r-methodss3: Update to 1.8.0.
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.0.
2020-02-19 20:58:31 +01:00
Ricardo Wurmus f5d0d7e0d7
gnu: r-dt: Update to 0.12.
* gnu/packages/statistics.scm (r-dt): Update to 0.12.
2020-02-19 20:58:23 +01:00
Ricardo Wurmus ff8b5e852e
gnu: r-foreach: Update to 1.4.8.
* gnu/packages/statistics.scm (r-foreach): Update to 1.4.8.
2020-02-19 20:58:14 +01:00
Ricardo Wurmus 0c740489f9
gnu: r-rcpparmadillo: Update to 0.9.850.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.850.1.0.
2020-02-19 20:58:05 +01:00
Ricardo Wurmus 2d4c4651c5
gnu: r-devtools: Update to 2.2.2.
* gnu/packages/statistics.scm (r-devtools): Update to 2.2.2.
2020-02-19 20:57:56 +01:00
Ricardo Wurmus f5afee1050
gnu: r-rstudioapi: Update to 0.11.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.11.
2020-02-19 20:57:05 +01:00
Ricardo Wurmus eea33597e0
gnu: r-checkmate: Update to 2.0.0.
* gnu/packages/statistics.scm (r-checkmate): Update to 2.0.0.
2020-02-19 20:56:57 +01:00
Ricardo Wurmus 26e41929c0
gnu: r-chron: Update to 2.3-55.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-55.
2020-02-19 20:56:44 +01:00
Ricardo Wurmus 3681b1c333
gnu: r-rlang: Update to 0.4.4.
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.4.
2020-02-19 20:56:31 +01:00
Ricardo Wurmus 738f3e0bba
gnu: r-knitr: Update to 1.28.
* gnu/packages/statistics.scm (r-knitr): Update to 1.28.
2020-02-19 20:56:23 +01:00
Ricardo Wurmus 67c6d5d000
gnu: r-yaml: Update to 2.2.1.
* gnu/packages/statistics.scm (r-yaml): Update to 2.2.1.
2020-02-19 20:56:16 +01:00
Ricardo Wurmus ebbed19baf
gnu: r-mime: Update to 0.9.
* gnu/packages/statistics.scm (r-mime): Update to 0.9.
2020-02-19 20:56:08 +01:00