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Author SHA1 Message Date
Ricardo Wurmus 021ab21b57
gnu: r-scannotatr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.2.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus ea283a3cda
gnu: r-rtracklayer: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 990ee0c7cc
gnu: r-rsamtools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.12.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus a8c63ab610
gnu: r-rhdf5filters: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.8.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 3c31e7e249
gnu: r-rhdf5: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.40.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus de8b8c86e6
gnu: r-reportingtools: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.36.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 21669d75f6
gnu: r-regioner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 9d05a948ea
gnu: r-rcas: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.22.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 1a873db6b2
gnu: r-rbgl: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.72.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 2b7c604ebf
gnu: r-protgenerics: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus d4201b5f61
gnu: r-pcamethods: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.88.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus e3878bc3c0
gnu: r-organismdbi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d1134b61fd
gnu: r-mzr: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 3eb763c2ba
gnu: r-mzid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.34.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6fe1e2d12
gnu: r-msnid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.30.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6f683b561
gnu: r-msnbase: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 8ec1ca001d
gnu: r-mutationalpatterns: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.6.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 56741afedd
gnu: r-methylkit: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 0cb9ffc4e3
gnu: r-limma: Update to 3.52.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.1.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus cb17da65a5
gnu: r-lfa: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.26.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 2a3372953d
gnu: r-keggrest: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus a6cb10afc3
gnu: r-interactivedisplaybase: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.34.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus cd9b5f0029
gnu: r-impute: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.70.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bb2b2f6543
gnu: r-rhtslib: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.28.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 3daf94f147
gnu: r-hpar: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.38.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 3e1dbcb3bf
gnu: r-gseabase: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.58.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 5c3a303d30
gnu: r-gostats: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.62.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bf93ff28c5
gnu: r-genomicranges: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.48.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus d14aeab8b8
gnu: r-genomicfiles: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.32.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus fa516541c3
gnu: r-genomicfeatures: Update to 1.48.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 1a04133411
gnu: r-genomicalignments: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus 4966e9e925
gnu: r-genomeinfodb: Update to 1.32.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.2.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 09ae595016
gnu: r-genomation: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.28.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus b755e0d623
gnu: r-geneoverlap: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.32.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus cb6e76dc63
gnu: r-genefilter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.78.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 3fd4c8f29f
gnu: r-gage: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus b604766021
gnu: r-fastseg: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.42.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 89b669ba0e
gnu: r-ensembldb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 9d030069d4
gnu: r-edger: Update to 3.38.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 1d19d45fe7
gnu: r-edaseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.30.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus 12a8b7bca3
gnu: r-dirichletmultinomial: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.38.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 380384a209
gnu: r-diffcyt: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.16.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus ea0c72bed0
gnu: r-dexseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.42.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus a83d8ee1eb
gnu: r-deseq2: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.36.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d29abfbd40
gnu: r-copywriter: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.28.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d15ab4ed30
gnu: r-complexheatmap: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.0.
[propagated-inputs]: Add r-codetools.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus d66077a5ad
gnu: r-chipseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.46.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 5e9e69ccd8
gnu: r-chipseeker: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus b7f95b40a8
gnu: r-category: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.62.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 417481b3b0
gnu: r-bsgenome: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.64.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus 6479274a0b
gnu: r-biovizbase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.44.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus e56181a34e
gnu: r-biocparallel: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.2.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 48ca8c8026
gnu: r-biomart: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.52.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 70b29256f6
gnu: r-biobase: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.56.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 4d9011c00b
gnu: r-bamsignals: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.28.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 043b388f38
gnu: r-aroma-light: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.26.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 0b2579cbe0
gnu: r-annotationhub: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.4.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 282985f6c3
gnu: r-annotationforge: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 3db3797305
gnu: r-annotationfilter: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.20.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus 0dcb2df4e1
gnu: r-annotationdbi: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.58.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 2563aeb416
gnu: r-annotate: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.74.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus b928f25f51
gnu: r-affxparser: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.68.1.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus da1e879b9b
gnu: r-affyio: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.66.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus fb1fb2b8c2
gnu: r-affycoretools: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.68.1.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus d4af958ae8
gnu: r-affycontam: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.54.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 83f8f3ae08
gnu: r-affycompatible: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.56.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 45a6d9c0f4
gnu: r-affycomp: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.72.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 429e687e69
gnu: r-affy: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.74.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus a15c457c59
gnu: r-isoformswitchanalyzer: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.18.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus 285b5cb7fa
gnu: r-iranges: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 48c3389314
gnu: r-ideoviz: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.32.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 051b7e63f2
gnu: r-bluster: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.6.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 59fff0e2d2
gnu: r-drimseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.24.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus cea1b9029a
gnu: r-derfinderhelper: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.30.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus a2173119ec
gnu: r-delayedarray: Update to 0.22.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.22.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus d15f46c5cf
gnu: r-deepsnv: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 7149e667c1
gnu: r-decipher: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.24.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 25847e60fe
gnu: r-dearseq: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1.
[propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang,
r-tibble, and r-viridislite.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus b0bd7ec471
gnu: r-cummerbund: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus 6f0430cdc2
gnu: r-coverageview: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 00d51727e5
gnu: r-biocgenerics: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus b19400063e
gnu: r-biocversion: Update to 3.15.2. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 75628fc7ce
gnu: r-aneufinder: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 5f9a73d665
gnu: r-adductomicsr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus a5e1a37cdf
gnu: r-agilp: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus e704ed78b5
gnu: r-aggregatebiovar: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 6e1d256151
gnu: r-agdex: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 052d0d283a
gnu: r-affyrnadegradation: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus f4a85d5555
gnu: r-affixcan: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus 3e524e46a0
gnu: r-adsplit: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 3a29b78fa9
gnu: r-adimpute: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 1d3b5f80e7
gnu: r-adamgui: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 69dc67d9aa
gnu: r-adam: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 5911a8992b
gnu: r-absseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 67d858b97c
gnu: r-abarray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 90d165ea86
gnu: r-biostrings: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 413133e430
gnu: Add r-decoupler. 
* gnu/packages/bioconductor.scm (r-decoupler): New variable.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 641f5c599e
gnu: apache-arrow: Update to 8.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 8.0.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus 1445f2c508
gnu: Add r-rcppml. 
* gnu/packages/cran.scm (r-rcppml): New variable.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus 39dab63790
gnu: Add r-dixontest. 
* gnu/packages/cran.scm (r-dixontest): New variable.
 2022-05-28 23:19:04 +02:00