dcf308a8bf
gnu: gtk+: Simplify inputs.
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Obtained by running:
guix style --input-simplification=always gtk+ gtk+@2
* gnu/packages/gtk.scm (gtk+-2, gtk+): Simplify inputs.
2021-12-05 23:24:48 +01:00
597119937d
gnu: gtk+@2: Use 'librsvg-for-system'.
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* gnu/packages/gtk.scm (gtk+-2)[propagated-inputs]: Use
'librsvg-for-system' unconditionally.
2021-12-05 23:15:24 +01:00
90570b5e9f
gnu: libsoup: Remove unneeded dependency on PHP.
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* gnu/packages/gnome.scm (libsoup-minimal)[native-inputs]: Remove PHP.
2021-12-05 23:10:44 +01:00
2561f2720f
gnu: gtk+: Use 'librsvg-for-system'.
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This brings back SVG support on non-x86_64 platforms.
* gnu/packages/gtk.scm (gtk+)[inputs]: Use 'librsvg-for-system'
unconditionally.
[arguments]: In 'disable-failing-tests' phase, remove conditional
substitutions aimed for non-x86_64 targets lacking librsvg support.
* gnu/packages/gnome.scm (libhandy)[arguments]: Likewise, remove
'skip-test-that-requires-svg' phase.
2021-12-05 22:42:26 +01:00
3bd7ce6053
gnu: emacs: Use 'librsvg-for-system'.
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* gnu/packages/emacs.scm (emacs)[inputs]: Use 'librsvg-for-system'
unconditionally.
2021-12-05 22:42:26 +01:00
c789d00b5f
gnu: openbox: Use 'librsvg-for-system'.
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* gnu/packages/openbox.scm (openbox)[inputs]: Use 'librsvg-for-system'
unconditionally.
2021-12-05 22:42:26 +01:00
efbaa5fcc8
gnu: mate: Depend on 'librsvg-for-system'.
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* gnu/packages/mate.scm (engrampa)[inputs]: Replace LIBRSVG by
LIBRSVG-FOR-SYSTEM.
(libmatekbd)[inputs]: Likewise.
(mate-panel)[inputs]: Likewise.
(mate-screensaver)[inputs]: Likewise.
(mate-utils)[inputs]: Likewise.
(mate-control-center)[inputs]: Likewise.
(eom)[inputs]: Likewise, and remove duplicate
[license]: Remove unnecessary list.
2021-12-05 22:42:25 +01:00
c19f968cbd
gnu: librsvg@2.40: Depend on the default Pango version.
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This avoids conflicts where, say, gtk+ would pull pango@1.44 whereas
mate-control-center would additionally pull pango@1.42 via librsvg@2.40
on i686-linux.
* gnu/packages/gnome.scm (librsvg-2.40)[arguments]: In
'remove-failing-tests' phase, remove two additional tests.
[inputs]: Change PANGO-1.42 to PANGO.
2021-12-05 22:42:25 +01:00
a9d426c492
gnu: Add texlive-latex-luatex.
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When TeX Live was updated to version 2021 the ‘lualatex’ format started
being generated with the LuaHBTeX engine, but the ‘lualatex’ command still
uses the LuaTeX engine. This causes the command to fail:
user@popigai:~$ lualatex hello.tex
This is LuaTeX, Version 1.13.0 (TeX Live 2021/GNU Guix)
restricted system commands enabled.
---! lualatex.fmt was written by luahbtex
(Fatal format file error; I'm stymied)user@popigai:~$
The correct way to fix this problem would be either to change texlive-bin
to make ‘lualatex’ use the LuaHBTeX engine, or to change texlive-latex-base
to generate ‘lualatex.fmt’ with LuaTeX. Both options would rebuild large
parts of the world.
Ricardo Wurmus suggested creating a new package to provide ‘lualatex.fmt’
for LuaTeX as a workaround. This is what this package does.
Fixes https://issues.guix.gnu.org/51252 .
* gnu/packages/tex.scm (texlive-latex-luatex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-05 22:42:25 +01:00
85c07e330c
gnu: gtranslator: Fix URL.
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Reported by Vivien Kraus.
* gnu/packages/gnome.scm (gtranslator)[source]: Change
'version-major+minor' to 'version-major'.
2021-12-05 22:42:25 +01:00
0f2a77e14f
gnu: Add libnftnl/fixed.
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* gnu/packages/linux.scm (libnftnl/fixed): New variable.
2021-12-05 22:26:26 +01:00
9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen
2021-12-05 19:17:41 +01:00
6db3c536e8
gnu: python-bwapy: Remove sanity-check.
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* gnu/packages/bioinformatics.scm (python-bwapy)[arguments]: Add phase
'relax-requirements to accept a slightly older version of wheel; remove the
'sanity-check phase.
2021-12-05 17:38:15 +01:00
dd67154e5d
gnu: Remove python2-plastid.
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* gnu/packages/bioinformatics.scm (python2-plastid): Remove variable.
2021-12-05 17:37:05 +01:00
98264531be
gnu: Remove python2-twobitreader.
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* gnu/packages/bioinformatics.scm (python2-twobitreader): Remove variable.
2021-12-05 17:36:43 +01:00
4202f4d58a
gnu: python-bbknn: Fix sanity-check phase.
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* gnu/packages/bioinformatics.scm (python-bbknn)[arguments]: Add phase
'do-not-fail-to-find-sklearn, which prevents the 'sanity-check phase from
failing.
2021-12-05 17:33:17 +01:00
b1bd997d50
gnu: python-bbknn: Add missing input.
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* gnu/packages/bioinformatics.scm (python-bbknn)[propagated-inputs]: Add
python-scikit-learn.
2021-12-05 17:32:50 +01:00
19f6b770dc
gnu: velvet: Add missing TeX package.
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* gnu/packages/bioinformatics.scm (velvet)[native-inputs]: Add
texlive-fonts-ec.
2021-12-05 17:22:11 +01:00
fe0f8c627a
gnu: velvet: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (velvet)[arguments]: Remove trailing #T from
build phases.
2021-12-05 17:21:39 +01:00
f2b99e3aaf
gnu: python-bwapy: Remove pre-built object files.
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* gnu/packages/bioinformatics.scm (python-bwapy)[source]: Remove all .o files
in a snippet.
2021-12-05 15:04:05 +01:00
57f278ffc4
gnu: metabat: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (metabat)[arguments]: Remove trailing #T
from build phases.
2021-12-05 15:04:05 +01:00
c13046cb68
gnu: clapack: Pass -fcommon to compiler.
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* gnu/packages/maths.scm (clapack)[arguments]: Set CFLAGS.
2021-12-05 15:04:04 +01:00
ae0acf6b6d
gnu: clapack: Remove trailing #T.
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* gnu/packages/maths.scm (clapack)[arguments]: Remove trailing #T from build
phases.
2021-12-05 15:04:04 +01:00
1d53c697b3
gnu: tla2tools: Remove remaining reference to %output.
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This is a follow-up to commit 7e6ee16d49
2021-12-05 15:04:04 +01:00
8ae33d6844
gnu: kraken2: Remove reference to %outputs.
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* gnu/packages/bioinformatics.scm (kraken2)[arguments]: Remove reference to
%outputs by using a gexp.
2021-12-05 15:04:04 +01:00
c973107a25
gnu: methyldackel: Remove reference to %outputs.
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* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Remove reference
to %outputs by using a gexp.
2021-12-05 15:04:04 +01:00
d531dc6761
gnu: phast: Remove reference to %outputs.
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* gnu/packages/bioinformatics.scm (phast)[arguments]: Remove reference to
%outputs by using a gexp.
2021-12-05 15:04:03 +01:00
2b1e53850f
gnu: libsbml: Remove references to %build-inputs.
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* gnu/packages/bioinformatics.scm (libsbml)[arguments]: Remove references to
%build-inputs by using a gexp.
2021-12-05 15:04:03 +01:00
dc4b4d4d95
gnu: ataqv: Remove references to %outputs and %build-inputs.
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* gnu/packages/bioinformatics.scm (ataqv)[arguments]: Remove references to
%outputs and %build-inputs by using a gexp.
2021-12-05 15:04:03 +01:00
03ca627b09
gnu: adapterremoval: Remove reference to %outputs.
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* gnu/packages/bioinformatics.scm (adapterremoval)[arguments]: Remove
reference to %outputs by using a gexp.
2021-12-05 15:04:03 +01:00
fac4c98699
gnu: bbmap: Remove reference to %build-inputs.
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* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Remove reference to
%build-inputs by using a gexp.
2021-12-05 15:04:03 +01:00
b798d90bee
gnu: intervaltree: Remove reference to %outputs.
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* gnu/packages/bioinformatics.scm (intervaltree)[arguments]: Remove reference
to %outputs by using a gexp.
2021-12-05 15:04:03 +01:00
c9892edceb
gnu: biobambam2: Remove reference to %build-inputs.
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* gnu/packages/bioinformatics.scm (biobambam2)[arguments]: Remove reference to
%build-inputs by using a gexp.
2021-12-05 15:04:02 +01:00
a8b60bd475
gnu: sjcount: Remove reference to %build-inputs.
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* gnu/packages/bioinformatics.scm (sjcount)[arguments]: Remove reference to
%build-inputs by using a gexp.
2021-12-05 15:04:02 +01:00
4c6cb448fd
gnu: sjcount: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (sjcount)[arguments]: Remove trailing #T
from build phases.
2021-12-05 15:04:02 +01:00
c1fe074915
gnu: dropseq-tools: Remove reference to %build-inputs.
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* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Remove reference
to %build-inputs by using a gexp.
2021-12-05 15:04:02 +01:00
1462e5c919
gnu: dropseq-tools: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Remove
trailing #T from build phases...
[source]: ...and from the snippet.
2021-12-05 15:04:02 +01:00
10554e0a57
gnu: python-django-netfields: Update to 1.2.4.
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* gnu/packages/django.scm (python-django-netfields): Update to 1.2.4.
2021-12-05 14:40:08 +01:00
50fff94b5a
gnu: python-django: Update to 3.2.9.
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* gnu/packages/django.scm (python-django): Update to 3.2.9.
2021-12-05 14:40:08 +01:00
f63fb61d0c
import: PyPI: Validate GPG signatures when applicable.
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* guix/import/pypi.scm (<distribution>): Fix funny typo.
(latest-release): When the distribution has a cryptographic signature, pass it
along to UPSTREAM-SOURCE.
2021-12-05 14:40:08 +01:00
e166e6acf6
gnu: drbd-utils: Update to 9.19.1.
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* gnu/packages/cluster.scm (drbd-utils): Update to 9.19.1.
2021-12-05 14:40:07 +01:00
21e2be5968
gnu: emacs-peg: Update to 0.10.3.
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* gnu/packages/emacs-xyz.scm (emacs-peg): Update to 0.10.3.
2021-12-05 14:20:16 +01:00
c61e49aa94
gnu: tbb: Update to 2021.4.0.
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* gnu/packages/tbb.scm (tbb): Update to 2021.4.0.
2021-12-05 14:02:10 +01:00
db5646d957
gnu: Adjust for python-build-system behavior change.
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Commit cb72f9a773
2021-12-05 14:02:10 +01:00
b507cc49ab
gnu: python-pyvcf: Fix bytecode compilation.
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* gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Add phase to
patch sample script.
2021-12-05 14:02:10 +01:00
a2584a08be
gnu: python-whisper: Update to 1.1.8.
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* gnu/packages/monitoring.scm (python-whisper): Update to 1.1.8.
2021-12-05 14:02:10 +01:00
0d196ab9bd
gnu: python-mailman-hyperkitty: Update to 1.2.0.
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* gnu/packages/mail.scm (python-mailman-hyperkitty): Update to 1.2.0.
[source](patches): Remove.
2021-12-05 14:02:10 +01:00
3f9d122dcb
gnu: python-hyperkitty: Update to 1.3.5.
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* gnu/packages/mail.scm (python-hyperkitty): Update to 1.3.5.
[arguments]: Add pythonpath in test invokation.
[propagated-inputs]: Add PYTHON-MISTUNE-NEXT. Change from PYTHON-DJANGO-2.2
to PYTHON-DJANGO.
[native-inputs]: Add PYTHON-LXML.
2021-12-05 14:02:10 +01:00
b0ce8bdb39
gnu: Add python-mistune-next.
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* gnu/packages/python-xyz.scm (python-mistune-next): New variable.
2021-12-05 14:02:09 +01:00
f457fb19dd
gnu: python-django-haystack: Update to 3.1.1.
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* gnu/packages/django.scm (python-django-haystack): Update to 3.1.1.
[arguments]: Adjust substitution.
2021-12-05 14:02:09 +01:00
Ludovic Courtès
Thiago Jung Bauermann
Ricardo Wurmus
Marius Bakke
Nicolas Goaziou