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130383 Commits (89513b8ed3d9d3287decc4e5e4fbe74d3d0605a2)

Author SHA1 Message Date
Gabriel Wicki 014d0541ae
gnu: python-evdev: Update to 1.5.0. 
* gnu/packages/linux.scm (python-evdev): Update to 1.5.0.

Change-Id: Id83c621f31222ebfb4848366b94e1f16c75742aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-22 21:03:15 +00:00
Ricardo Wurmus 40cff060fd
gnu: Add emacs-coterm. 
* gnu/packages/emacs-xyz.scm (emacs-coterm): New variable.

Change-Id: Ib96078fa906242dd532a0c949de3049b92804891
 2024-01-22 21:40:09 +01:00
Wilko Meyer 497780ad25
news: Add entry for removing linux-libre 4.14 (EoL). 
* etc/news.scm: Add entry for linux-libre 4.14 removal and add my copyright
header.

Change-Id: I5c2418bc22a4ae2bba63c1cf77e66d2574766e01
 2024-01-22 13:25:30 -05:00
Wilko Meyer 10a1935963
gnu: Remove linux-libre 4.14. 
* gnu/packages/linux.scm (linux-libre-4.14-version,
linux-libre-4.14-gnu-revision, deblob-scripts-4.14,
linux-libre-4.14-pristine-source, linux-libre-4.14-source,
linux-libre-headers-4.14, linux-libre-4.14, linux-libre-arm-generic-4.14,
linux-libre-arm-omap2plus-4.14): Remove variables.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf,
gnu/packages/aux-files/linux-libre/4.14-i686.conf,
gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove aforementioned .conf files.
* gnu/tests/base.scm (%test-linux-libre-4.14): Remove variable.

Change-Id: I40393b5f46b989848d569c929f1d9c986736553e
 2024-01-22 13:24:20 -05:00
Oleg Pykhalov 29c26a8d30
gnu: moonlight-qt: Update to 5.0.1. 
* gnu/packages/games.scm (moonlight-qt): Update to 5.0.1.
[arguments]<#:phases>: Update moonlight-qt.pro file substitute to not include
bundled h264bitstream library.

Change-Id: I9c68f7c6de39a0d78c6ef5b48d2272cdf3f771b5
 2024-01-22 19:12:43 +03:00
Oleg Pykhalov e677aceb5d
gnu: moonlight-common: Update to 5.0.1-1.5de4a5b. 
* gnu/packages/games.scm (moonlight-common): Update to 5.0.1-1.5de4a5b.

Change-Id: I6b539162c0d57830d41059611746a7d376322345
 2024-01-22 19:12:43 +03:00
Oleg Pykhalov d52d4b833a
gnu: h264bitstream: Update to 0.2.0-1.ae72f73. 
* gnu/packages/video.scm (h264bitstream): Update to 0.2.0-1.ae72f73.

Change-Id: I0aa9422f236995086275c492a2093f2acb894ab1
 2024-01-22 19:12:43 +03:00
David Thompson 9f80c86672
gnu: guile-goblins: Update to 0.12.0. 
* gnu/packages/guile-xyz.scm (guile-goblins): Update to 0.12.0.

Change-Id: I0768ca6118c8b16ea6e5ae235dfefa7d28f727e3
 2024-01-22 10:05:26 -05:00
Romain GARBAGE 916fb5347a
guix: download: Add support for git repositories. 
* guix/scripts/download.scm (git-download-to-store*): Add new variable.
(copy-recursively-without-dot-git): New variable.
(git-download-to-file): Add new variable.
(show-help): Add 'git', 'commit', 'branch' and 'recursive'options
help message.
(%default-options): Add default value for 'git-reference' and
'recursive' options.
(%options): Add 'git', 'commit', 'branch' and 'recursive' command
line options.
(guix-download) [hash]: Compute hash with 'file-hash*' instead of
'port-hash' from (gcrypt hash) module. This allows us to compute
hashes for directories.
* doc/guix.texi (Invoking guix-download): Add @item entries for
`git', `commit', `branch' and `recursive' options. Add a paragraph in
the introduction.
* tests/guix-download.sh: New tests. Move variables and trap definition
to the top of the file.

Change-Id: Ic2c428dca4cfcb0d4714ed361a4c46609339140a
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-22 10:02:28 -05:00
muradm 1bdeec5d66
services: connman: Add 'connman-general-configuration'. 
Currently connman has no main.conf as specified in 'man 5 connman.conf' which
would allow setting NetworkInterfaceBalcklist and other useful options.

This patch adds connman-general-configuration, serializes it and
passes to connmad with --config= flag.

All configuration fields are 'maybe-*' deliberately, to not disturb current
users and not require supporting configuration changes for connmand.

* gnu/services/networking.scm (<connman-general-configuration>): New
configuration record to represent main.conf for connmand.
(<connman-configuration>)[general-configuration]: New field.
(connman-shepherd-service): Honor it.
*doc/guix.texi (Networking Services): Add generated configuration.

Change-Id: I5d78f49e8b2d5e0b3cbd7b8b604e8a254b6397e8
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-22 09:51:32 -05:00
muradm 2b04ebaa74
gnu: cgit: Fix patch-absolute-file-names phase. 
* gnu/packages/version-control.scm (cgit) [arguments]: Fix regexp in patch-absolute-file-names phase.

Change-Id: I06c624ba23bfd0b8ca45045d1d2155c53258047e
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-22 08:54:47 -05:00
Ricardo Wurmus bafc6efe48
gnu: r-flowstats: Update to 4.14.1. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.1.

Change-Id: I0a5d93cb08d169759b3f3817ab9b68b76fd5883f
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 1849ed7487
gnu: r-flowworkspace: Update to 4.14.2. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.2.

Change-Id: I7d47b89fedf207b930fc8bef6aedcbce4628a2d9
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 522a646714
gnu: r-gosemsim: Update to 2.28.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.1.
[propagated-inputs]: Add r-yulab-utils.

Change-Id: Idf93e061ef43c2900a96fa9cafeaff95d13fa3be
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 500fc9e891
gnu: r-rhtslib: Update to 2.4.1. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.1.

Change-Id: If0da0bbfbbfcb2f41b354ba1772967f9fee778ca
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus c61e835022
gnu: r-edger: Update to 4.0.11. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.11.

Change-Id: I27638e6082286fa6e7876ce29ecf272d88402946
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 2d331f9ba0
gnu: r-tximportdata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.30.0.

Change-Id: Id02981fc94304cade5dbdc4c13a78d7155e62408
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 2c5ea54d89
gnu: r-tcgabiolinksgui-data: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.22.0.

Change-Id: Icb4d98fb51bea7d14500b84928c3cd8876161d7c
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus ab9f9b582e
gnu: r-sesamedata: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.20.0.

Change-Id: Idc8ff7679495ede0dd037ef393300c7fe4787610
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 196e1f9025
gnu: r-parathyroidse: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.40.0.

Change-Id: I2a012832f1d0ea4468497ed82c528af10d660391
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 71c4d03835
gnu: r-curatedtcgadata: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.0.

Change-Id: If094ca958ff73b6aecd39c3d91042e9e75eb2075
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus ffd1da975f
gnu: r-gagedata: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.40.0.

Change-Id: Ifdbcee3c7c6c354530d62cc79f05cf30be432f3a
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus e9a99d768b
gnu: r-affydata: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.50.0.

Change-Id: I653e146ff884bd72771ed779c4d9d65b03a7fdd9
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus aef69bfc03
gnu: r-all: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-all): Update to 1.44.0.

Change-Id: I9f2817b571d2c42d57927370b51319e52388a3b5
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 1d0674befe
gnu: r-hsmmsinglecell: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.22.0.

Change-Id: I541a4637f7ec9b6e85e52c8f222002adef230a50
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus 54efc5bd86
gnu: r-pasilla: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.30.0.

Change-Id: I3d309814bc0237181540e1c84ad8feca34f2fcef
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 1deaa74a6f
gnu: r-msigdb: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.10.0.

Change-Id: I32ad805ff92e7084eb682c239037978f183c323e
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 88beafd5dc
gnu: r-msdata: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.42.0.

Change-Id: I94953464f1c9ef0e361c68a69fdbc9b11f46c4f8
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 13c2e3c9e4
gnu: r-minfidata: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.48.0.

Change-Id: I8485d570629d23b294a9ea4143a88ed91ae737af
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus cbb019eef6
gnu: r-mousegastrulationdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.16.0.

Change-Id: I18a4fe4dbbcf3cc7f19084170fc8280fd4d5e7cf
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 55b3f66131
gnu: r-macrophage: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.18.0.

Change-Id: I51228161aac4cb10470aa2262fdc507a4cb903ec
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 0af8e69b32
gnu: r-italicsdata: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.40.0.

Change-Id: I55a0100167f98571a562c0ca5fddbe41afeaf3d7
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus f4f7b82c5e
gnu: r-illumina450probevariants-db: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.38.0.

Change-Id: Ic5af6f5e7ba653edc5ed785f2b3e9d522e7586af
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus da790d92e5
gnu: r-hdcytodata: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.0.

Change-Id: I06afd0ffdd8c1b77ce03e9aabe59f150c28e6141
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus c916f39b5c
gnu: r-genomationdata: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.34.0.

Change-Id: Ia8e4535efcdcbb0e706b1e9682594467ab8c2fda
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 8369898fb0
gnu: r-genelendatabase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.38.0.

Change-Id: Idf120599c34af21cd3c5c854d434c93c702f0cd4
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 95c3baf59f
gnu: r-flowsorted-blood-epic: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.6.0.

Change-Id: I458aa7c0ac482d1e60d6afb66b236ea6886d7ce6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 43e6cc3189
gnu: r-flowsorted-blood-450k: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.40.0.

Change-Id: Ia2d2ae18c80d3a4a7858026a424da1537d657782
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 4c4f07ca26
gnu: r-copyhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.34.0.

Change-Id: I2cfa340e85fb723615295949ef614db1761f9c6e
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus f0591739ce
gnu: r-chromstardata: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.28.0.

Change-Id: I5146185d21a589b93152fe67df4e4a100a0b0a33
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 225f49fb30
gnu: r-champdata: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.34.0.

Change-Id: I658aab6c78df1fcbd7fb4d34df144635a2a10347
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 7b5db44490
gnu: r-celldex: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.12.0.

Change-Id: I565b21aafa46cb710a8acc3ab16b7905614e6838
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 1aac5e7bc8
gnu: r-breakpointrdata: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.20.0.

Change-Id: I1fe98a2e5fd8bf4b3106c7315dda8dee906c5152
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 6c1bb9047e
gnu: r-biscuiteerdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.16.0.
[propagated-inputs]: Add r-genomicranges.

Change-Id: I5459630b266f04bbac50562cb134e9ca28bbc2d7
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus cd5a4ac6df
gnu: r-bladderbatch: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.40.0.

Change-Id: I2d5ec797815dd0101da8692b1fa320020c33ab85
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 09ee801fe9
gnu: r-bcellviper: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.38.0.

Change-Id: Iaac28d6376364c0d0e30c29deb6df22c40b18b29
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus ee966f03d5
gnu: r-arrmdata: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.38.0.

Change-Id: Id1c900cd1a058057d18129c7f2d373bc4772d5cd
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 9512db59ab
gnu: r-aneufinderdata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0.

Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus 8f70c2352d
gnu: r-adductdata: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0.

Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus b6fb97a250
gnu: r-pfam-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0.

Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682
 2024-01-22 13:54:45 +01:00