cdb365eb07
gnu: golang-check: Sort packages alphabetically.
...
This commit is a housekeeping measure to prepare for natural and
structured enlargement.
* gnu/packages/golang-check.scm: Improve module commentary introduce
sections for libraries and executables and sort packages alphabetically.
Change-Id: Ifcac216c1c04e569cfdf2a7d902165a36ed06b32
2024-01-31 21:59:56 +00:00
0ab9930c0f
gnu: go-honnef-co-go-tools: Update homepage.
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Fixing lint warning by updating home page to actual one found on
project's GitHub page: URI <https://honnef.co/go/tools > returned
suspiciously small file (333 bytes)
* gnu/packages/golang-check.scm (go-honnef-co-go-tools) [home-page]:
Update it.
Change-Id: I8956b146ff3f826c11b03212c365cf91120380b6
2024-01-31 21:20:18 +00:00
f4dd770550
gnu: go-honnef-co-go-tools: Improve synopsis and description.
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* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Improve
synopsis and description.
Change-Id: I357626457418f8c6f1b05918226c33f7faa88d49
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:20:17 +00:00
a27d0f975b
gnu: Add go-structlayout-pretty.
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* gnu/packages/golang-check.scm (go-structlayout-pretty): New variable.
Change-Id: I622a991b12708ee52eb412a3c6b3fbeeb512843d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:20:17 +00:00
98651390a7
gnu: Add go-structlayout-optimize.
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* gnu/packages/golang-check.scm (go-structlayout-optimize): New variable.
Change-Id: I7e1ce9acbe3ec09cc8b441de4816b247a2742938
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:20:17 +00:00
b3e74eb26d
gnu: Add go-structlayout.
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* gnu/packages/golang-check.scm (go-structlayout): New variable.
Change-Id: I7440cdf75238fc73451cefc73b3ce3eb3d4da323
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:20:17 +00:00
d6410c5c47
gnu: Add go-staticcheck.
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* gnu/packages/golang-check.scm (go-staticcheck): New variable.
Change-Id: I82ce27df1bdbd79ae4740928e0661b585289d02b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:20:17 +00:00
6d5fe89e8e
gnu: Add go-keyify.
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* gnu/packages/golang-check.scm (go-keyify): New variable.
Change-Id: I99d41a18cb0e00dd35bef9c2c8fce12748f24ad4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:20:17 +00:00
eab88f2e45
gnu: Remove go-github-com-kisielk-gotool.
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* gnu/packages/golang-check.scm (go-github-com-kisielk-gotool): Delete variable.
Change-Id: Ic99bba40f4cd66335656f27bf7dd97d1b90bb8f1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-31 21:02:33 +00:00
b41bcc0434
gnu: go-torproject-org-pluggable-transports-goptlib: Move to (gnu packages golang-crypto).
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* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib):
Move from here ...
gnu/packages/golang-crypto.scm: ... to here.
Change-Id: I3bc97e64bd3680405c90eb84c2d7d3c7ff9092e0
2024-01-31 20:14:29 +00:00
849f219b72
gnu: go-torproject-org-pluggable-transports-goptlib: Fix import path.
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* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib)
[arguments] <#:import-path>: Use actual module name from go.mod.
(go-github-com-operatorfoundation-shapeshifter-transports) [arguments]
<#:phases>: Remove obsolete 'patch phase for goptlib.
(go-github-com-operatorfoundation-obfs4) [arguments] <#:phases>: Likewise.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ib2e49164e2c750694101b497afe1be67c7fe6302
2024-01-31 19:59:42 +00:00
023c3e0ac4
services: certbot: Add one-shot service to renew certificates.
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* gnu/services/certbot.scm (certbot-renewal-one-shot): New procedure.
(certbot-service-type)[extensions]: Add it to shepherd-root extension.
(certbot-command): Make connection errors return a different exit code.
(certbot-activation): Remove message with certificate renewal instructions.
Change-Id: I614ac6214a753dba0396e2385a75926c8355caa1
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-31 16:54:19 +01:00
d4a4b12f0a
services: certbot: Reload nginx in deploy hook.
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* gnu/services/certbot.scm (certbot-deploy-hook): Reload nginx.
* doc/guix.texi (Certificate services): Remove deploy-hook from example.
Change-Id: Ibb10481170a6fda7df72492072b939dd6a6ad176
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-31 16:54:16 +01:00
fc0ec9a3cc
services: certbot: Create self-signed certificates before certbot runs.
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* gnu/services/certbot.scm (<certificate-configuration>): Add
start-self-signed? field.
(generate-certificate-gexp): New procedure.
(certbot-activation): Generate self-signed certificates when
start-self-signed? is #t.
* doc/guix.texi (Certificate services): Document start-self-signed?.
Change-Id: Icfd85ae0c3e29324acbcde6ba283546cf0e27a1d
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-31 16:54:12 +01:00
a2b1ef903b
services: certbot: Symlink certificates to /etc/certs.
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* gnu/services/certbot.scm (certbot-deploy-hook): New procedure.
(certbot-command): Pass new deploy hook to certbot.
* doc/guix.texi: Replace "letsencrypt/live" with "certs" throughout, except in
the certbot deploy-hook description.
Change-Id: I2ba5e4903d1e293e566b732a84b07d5a134b697d
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-31 16:54:03 +01:00
7a45f7b9e1
gnu: cl-maidenhead: Update to 1.1-1.4b9c38e.
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* gnu/packages/lisp-xyz.scm (sbcl-maidenhead): Update to 1.1-1.4b9c38e.
Change-Id: I766a3d70fc330cf0f1628091c6ed52f1085199e5
2024-01-31 10:41:33 +01:00
fa023a9300
gnu: cl-command-line-args: Update to 0.1.0.
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* gnu/packages/lisp-xyz.scm (sbcl-command-line-args): Update to 0.1.0.
[inputs]: Add sbcl-charje.documentation.
Change-Id: Iadac4decc64f2333878dd5b106e1e82c33b40e30
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-01-31 10:34:55 +01:00
66dd088d3c
maint: Add gnupg to the manifest.
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* manifest.scm: Add gnupg.
Change-Id: Id5e90f87e5c3a07aa3e49afa97cc0b6d3ce71b41
2024-01-31 09:07:25 +01:00
323b58ac18
channels: ‘latest-channel-instances’ traverses user-provided channels first.
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Previously, ‘latest-channel-instances’ would perform a depth-first
traversal of channels. Since dependencies specified in ‘.guix-channel’
are usually less specific that those provided by the user, this would
lead to the use of instances corresponding to those less specific specs,
which in turn might declare dependencies that do not exist for the more
specific instances.
This commit changes ‘latest-channel-instances’ to perform a
breadth-first traversal, thereby giving user-supplied channels higher
precedence over dependencies found via ‘.guix-channel’.
Fixes <https://issues.guix.gnu.org/68822 >.
* guix/channels.scm (latest-channel-instances)[ignore?]: Remove.
[instance-name, same-named?, more-specific?]: New procedures.
Rewrite as a breadth-first traversal using a regular loop.
* tests/channels.scm ("latest-channel-instances reads dependencies from most-specific instance"):
New test.
Change-Id: Iba518145cfd209f04293a56246dbfee3b714650b
2024-01-31 09:07:25 +01:00
36d654fa54
channels: Tweak test.
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* tests/channels.scm ("latest-channel-instances excludes duplicate channel dependencies"):
Use ‘equal?’ rather than ‘string=?’ since we can get #f.
Change-Id: I437b9d7e23200cf0c98b1593e68b1d355bc2de01
2024-01-31 09:07:25 +01:00
88e8b807d6
gnu: torbrowser: Copy buildID from the official build.
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* gnu/packages/tor.scm (%moz-build-date): Update to 20240115174022.
Reported-by: André Batista <nandre@riseup.net>
Change-Id: Ia057d6efe9db9e04ece03d994ee226ecdbc6cc04
2024-01-31 03:02:07 +01:00
c4687f5437
Revert "gnu: Add minify."
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This reverts commit f8c2d8141ehttps://ci.guix.gnu.org/eval/1086875/log/raw >
Change-Id: I26e02842980cf09e924ac1cae8f3a6421a005276
2024-01-30 23:56:11 +00:00
7a63fba807
teams: go: Add golang-xyz.scm to scope.
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* etc/teams.scm (go): Add "gnu/packages/golang-xyz.scm".
Change-Id: I580eadf52b631c6582e256a2900786b53483a466
2024-01-30 22:58:22 +00:00
f8c2d8141e
gnu: Add minify.
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* gnu/packages/web.scm (minify): New variable.
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Co-authored-by: Hilton Chain <hako@ultrarare.space>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I7289c77a17f63501b6c7771606d396241333ac3a
2024-01-30 22:58:22 +00:00
aab6ea6f41
gnu: Add go-github-com-matryer-try.
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* gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1
2024-01-30 22:58:22 +00:00
b998d58221
gnu: Add go-github-com-djherbis-atime.
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* gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d
2024-01-30 22:58:22 +00:00
376bba6030
gnu: Add (gnu packages golang-xyz) module.
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* gnu/packages/golang-xyz.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope.
Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
2024-01-30 22:58:22 +00:00
fb2b72a5f3
gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web).
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Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by
the owner on Feb 27, 2023.
* gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.
Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103
2024-01-30 22:58:22 +00:00
f6bbee5f05
gnu: axoloti-patcher: Add missing headers.
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* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic
headers in search paths.
Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a
2024-01-30 22:44:43 +01:00
c2dc19aecc
gnu: axoloti-patcher: Use G-expression.
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* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression;
delete 'make-git-checkout-writable phase.
Change-Id: I4f9b98351f1752391211f1aed84d484184d32771
2024-01-30 22:44:09 +01:00
bed3a0b547
gnu: yggdrasil: Update to 0.5.5.
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* gnu/packages/networking.scm (yggdrasil): Update to 0.5.5.
Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-01-30 17:11:54 +01:00
a901e950dd
gnu: guile-hoot: Update to 0.3.0.
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* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0.
Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd
2024-01-30 11:08:37 -05:00
7cdad00e30
gnu: r-scran: Update to 1.30.2.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2.
Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
2024-01-30 16:59:52 +01:00
aa7950070b
gnu: r-bioccheck: Update to 1.38.2.
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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2.
[propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest.
Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
2024-01-30 16:59:51 +01:00
8d8eec7f9d
gnu: r-flowcore: Update to 2.14.1.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1.
Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
2024-01-30 16:59:51 +01:00
9e1e462746
gnu: r-rsubread: Update to 2.16.1.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1.
Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
2024-01-30 16:59:51 +01:00
ca6e432089
gnu: r-edger: Update to 4.0.12.
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* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12.
Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
2024-01-30 16:59:51 +01:00
4df162962d
gnu: r-biostrings: Update to 2.70.2.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2.
Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
2024-01-30 16:59:51 +01:00
1c27a3a8a8
gnu: r-biomart: Update to 2.58.1.
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* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1.
Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
2024-01-30 16:59:51 +01:00
6f11ca52f1
gnu: r-robustbase: Update to 0.99-2.
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* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2.
Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
2024-01-30 15:48:57 +01:00
ef5640f763
gnu: r-viridis: Update to 0.6.5.
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* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5.
Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
2024-01-30 15:48:57 +01:00
c72ceba47f
gnu: r-commonmark: Update to 1.9.1.
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* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1.
Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
2024-01-30 15:48:57 +01:00
e6847d7a2f
gnu: r-data-table: Update to 1.15.0.
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* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0.
Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
2024-01-30 15:48:57 +01:00
71936c6145
gnu: r-tfruns: Update to 1.5.2.
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* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2.
Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
2024-01-30 15:48:57 +01:00
08d6f49857
gnu: r-spatstat-geom: Update to 3.2-8.
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* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8.
Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
2024-01-30 15:48:57 +01:00
281db78112
gnu: r-iheatmapr: Update to 0.7.1.
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* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1.
Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
2024-01-30 15:48:57 +01:00
2435d457e8
gnu: r-emoa: Update to 0.5-2.
...
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2.
Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
2024-01-30 15:48:56 +01:00
6bde30b814
gnu: r-tidygraph: Update to 1.3.1.
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* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1.
Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
2024-01-30 15:48:56 +01:00
a03ad38b2f
gnu: r-xgboost: Update to 1.7.7.1.
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* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1.
Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
2024-01-30 15:48:56 +01:00
50e728fbab
gnu: r-yulab-utils: Update to 0.1.4.
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* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4.
Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
2024-01-30 15:48:56 +01:00
Sharlatan Hellseher
Nicolas Graves
Sarah Morgensen
Carlo Zancanaro
Guillaume Le Vaillant
Charles
Ludovic Courtès
Ludovic Courtès
Clément Lassieur
Thomas Ieong
Ricardo Wurmus
Artyom V. Poptsov
David Thompson