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109917 Commits (8eccc02ec995f69f3dbe3fe22010503e9ea2aa00)

Author SHA1 Message Date
Nicolas Goaziou 04b773ad9b
gnu: emacs-jsonrpc: Update to 1.0.17. 
* gnu/packages/emacs-xyz.scm (emacs-jsonrpc): Update to 1.0.17.
 2023-03-16 00:10:57 +01:00
Nicolas Goaziou c4c67bc888
gnu: emacs-yaml: Update to 0.5.2. 
* gnu/packages/emacs-xyz.scm (emacs-yaml): Update to 0.5.2.
 2023-03-16 00:10:57 +01:00
Nicolas Goaziou ba4a8b675c
gnu: emacs-zenburn-theme: Update to 2.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-zenburn-theme): Update to 2.8.0.
 2023-03-16 00:10:56 +01:00
Nicolas Goaziou d8bb82a0c7
gnu: emacs-vertico: Update to 1.2. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 1.2.
 2023-03-16 00:10:56 +01:00
Nicolas Goaziou 987e35b3df
gnu: emacs-package-lint: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-package-lint): Update to 0.17.
 2023-03-16 00:10:56 +01:00
Nicolas Goaziou b6b8d032c1
gnu: emacs-inspector: Update to 0.28. 
* gnu/packages/emacs-xyz.scm (emacs-inspector): Update to 0.28.
[arguments]<#:phases>: Remove unnecessary phase.
 2023-03-16 00:10:55 +01:00
Nicolas Goaziou c261638e85
gnu: emacs-consult: Update to 0.33. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.33.
 2023-03-16 00:10:55 +01:00
Nicolas Goaziou 2232666e19
gnu: emacs-ef-themes: Update to 0.11.0. 
* gnu/packages/emacs-xyz.scm (emacs-ef-themes): Update to 0.11.0.
 2023-03-16 00:10:55 +01:00
Nicolas Goaziou 9b12dd9dda
gnu: emacs-citar: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-citar)[arguments]: Run tests.
 2023-03-16 00:10:54 +01:00
Nicolas Goaziou 179eaf02c4
gnu: emacs-citar: Update to 1.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 1.2.0.
 2023-03-16 00:10:54 +01:00
Nicolas Goaziou 511225c661
gnu: emacs-xref: Update to 1.6.3. 
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.6.3.
 2023-03-16 00:10:53 +01:00
Nicolas Goaziou 858feeb801
gnu: emacs-eglot: Update to 1.13. 
* gnu/packages/emacs-xyz.scm (emacs-eglot): Update to 1.13.
 2023-03-16 00:10:53 +01:00
Nicolas Goaziou 2a3d773cbb
gnu: emacs-subed: Update to 1.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.0.
 2023-03-16 00:10:53 +01:00
Nicolas Graves via Guix-patches via 6cc350ed0d
gnu: emacs-julia-snail: Update propagated-inputs. 
* gnu/packages/emacs-xyz.scm (emacs-julia-snail)[propagated-inputs]: Add
JULIA-TOKENIZE and JULIA-CSTPARSER.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-16 00:10:52 +01:00
Nicolas Graves via Guix-patches via 6993977548
gnu: Add julia-cstparser. 
* gnu/packages/julia-xyz.scm (julia-cstparser): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-16 00:10:52 +01:00
Nicolas Graves via Guix-patches via 96801c11c8
gnu: Add julia-tokenize. 
* gnu/packages/julia-xyz.scm (julia-tokenize): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-16 00:10:51 +01:00
Nicolas Graves via Guix-patches via 834440f65a
gnu: emacs-julia-snail: Update include list. 
* gnu/packages/emacs-xyz.scm (emacs-julia-snail): Update include list.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-16 00:10:51 +01:00
Rostislav Svoboda 41849eae78
gnu: Add emacs-ac-php. 
* gnu/packages/emacs-xyz.scm (emacs-ac-php): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-16 00:10:51 +01:00
Rostislav Svoboda 28bf6720e7
gnu: Add emacs-xcscope. 
* gnu/packages/emacs-xyz.scm (emacs-xcscope): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-16 00:10:50 +01:00
Ricardo Wurmus 4496ff34a3
gnu: Add r-conqur. 
* gnu/packages/bioinformatics.scm (r-conqur): New variable.
 2023-03-15 18:31:23 +01:00
Ricardo Wurmus 8309556cf3
gnu: Add r-cqrreg. 
* gnu/packages/cran.scm (r-cqrreg): New variable.
 2023-03-15 18:25:57 +01:00
Ricardo Wurmus eb467fe231
gnu: Add r-fastdummies. 
* gnu/packages/cran.scm (r-fastdummies): New variable.
 2023-03-15 18:25:09 +01:00
Ricardo Wurmus 953d808d28
gnu: r-biocthis: Update to 1.8.3. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 81697789df
gnu: r-chromvar: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus d9f29e0342
gnu: r-fishpond: Update to 2.4.1. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.4.1.
[propagated-inputs]: Remove r-rcpp.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 0d90a01416
gnu: r-s4vectors: Update to 0.36.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 400c046942
gnu: r-biocviews: Update to 1.66.3. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus b21a06353a
gnu: r-bioccheck: Update to 1.34.3. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 2731b5a58c
gnu: r-variancepartition: Update to 1.28.7. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.7.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 5d800ec66b
gnu: r-circrnaprofiler: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.12.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 78fbd6f666
gnu: r-cicero: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.16.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 20300ca9c1
gnu: r-rsubread: Update to 2.12.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 9ee316a7e4
gnu: r-iclusterplus: Update to 1.34.3. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 01911fa0a4
gnu: r-rbowtie2: Update to 2.4.2. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.4.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus ab6909adf0
gnu: r-motifbreakr: Update to 2.12.3. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.12.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus e952be7fb2
gnu: r-clusterexperiment: Update to 2.18.2. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 7f7e39b89b
gnu: r-clusterprofiler: Update to 4.6.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.6.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 0e1edb67ae
gnu: r-sigpathway: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus f8c823274d
gnu: r-linnorm: Update to 2.22.2. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 969e7f1c4f
gnu: r-glmgampoi: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 590897d28f
gnu: r-diffbind: Update to 3.8.4. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.4.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus af9bcbe90f
gnu: r-scmap: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 8c8930691c
gnu: r-mutationalpatterns: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 364d9b7c17
gnu: r-muscat: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 586d2bb696
gnu: r-limma: Update to 3.54.2. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 810a8e5060
gnu: r-lfa: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 20b1ef8047
gnu: r-genomicalignments: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 7f9346c031
gnu: r-annotationdbi: Update to 1.60.2. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus b9af764895
gnu: r-infercnv: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus b28eff5aec
gnu: r-bandits: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
 2023-03-15 17:40:41 +01:00