a0fdade220
gnu: python-contextlib2: Use HTTPS home page.
...
* gnu/packages/python-xyz.scm (python-contextlib2)[home-page]: Use HTTPS.
2020-03-03 05:06:48 +01:00
02510c6c9a
gnu: python-flask-principal: Update home page.
...
* gnu/packages/python-web.scm (python-flask-principal)[home-page]:
Follow (HTTPS) redirection.
2020-03-03 05:06:47 +01:00
fd3ae040cf
gnu: python-gipc: Use HTTPS home page.
...
* gnu/packages/python-xyz.scm (python-gipc)[home-page]: Use HTTPS.
2020-03-03 05:06:47 +01:00
d3d73bd650
gnu: python-seaborn: Update & use HTTPS home page.
...
* gnu/packages/python-xyz.scm (python-seaborn)[home-page]: Follow
redirection, but use HTTPS.
2020-03-03 05:06:47 +01:00
5d6e7106e1
gnu: python-vobject: Use HTTPS home page.
...
* gnu/packages/python-xyz.scm (python-vobject)[home-page]: Use HTTPS.
2020-03-03 05:06:47 +01:00
26827dfe36
gnu: python-activepapers: Use HTTPS home page.
...
* gnu/packages/python-xyz.scm (python-activepapers)[home-page]:
Use HTTPS.
2020-03-03 05:06:47 +01:00
f894ffd867
gnu: tome4: Update to 1.6.7.
...
* gnu/packages/games.scm (tome4): Update to 1.6.7.
2020-03-03 05:06:47 +01:00
bcea20cc90
gnu: shotwell: Update to 0.30.8.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.30.8.
2020-03-03 05:06:47 +01:00
5decb16015
gnu: gmime: Update to 3.2.6.
...
* gnu/packages/mail.scm (gmime): Update to 3.2.6.
2020-03-03 05:06:47 +01:00
363fe78af1
gnu: liblo: Update to 0.31.
...
* gnu/packages/audio.scm (liblo): Update to 0.31.
2020-03-03 05:06:47 +01:00
46b39ce835
gnu: fish: Don't use NAME in source URI.
...
* gnu/packages/shells.scm (fish)[source]: Hard-code NAME.
2020-03-03 05:06:47 +01:00
848be51c88
gnu: gptfdisk: Update to 1.0.5.
...
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.5.
[source]: Hard-code NAME.
[arguments]: Add ‘fix-include-directory’ phase.
2020-03-03 05:06:47 +01:00
0e08ca1454
gnu: amtk: Update to 5.0.2.
...
* gnu/packages/gnome.scm (amtk): Update to 5.0.2.
2020-03-03 05:06:47 +01:00
e82cf6c687
gnu: notmuch: Extend test time-out.
...
* gnu/packages/mail.scm (notmuch)[arguments]:
Add NOTMUCH_TEST_TIMEOUT=1h make flag.
2020-03-03 05:06:47 +01:00
5815531202
gnu: oil-shell: Update to 0.7.0.
...
* gnu/packages/shells.scm (oil-shell): Update to 0.7.0.
2020-03-03 05:06:47 +01:00
efebdf3a66
gnu: serd: Update to 0.30.2.
...
* gnu/packages/rdf.scm (serd): Update to 0.30.2.
2020-03-03 05:06:47 +01:00
78fca23163
gnu: python-pyudev: Update to 0.22.0.
...
* gnu/packages/admin.scm (python-pyudev): Update to 0.22.0.
2020-03-03 05:05:47 +01:00
6ce0865500
gnu: Go: Update to 1.13.8.
...
* gnu/packages/golang.scm (go-1.13): Update to 1.13.8.
2020-03-02 19:30:26 -05:00
15a6805751
gnu: Add system test for CUPS.
...
* gnu/tests/cups.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2020-03-02 23:39:44 +01:00
1f8838d1f6
gnu: libgc: Fix replacement inheritance.
...
* gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it
does not make sense to inherit any replacements of LIBGC.
(libgc/back-pointers): Use PACKAGE/INHERIT.
2020-03-02 23:39:44 +01:00
1e07875b57
gnu: Add r-zseq.
...
* gnu/packages/cran.scm (r-zseq): New variable.
2020-03-02 23:05:49 +01:00
02366a12d0
gnu: Add r-ztype.
...
* gnu/packages/cran.scm (r-ztype): New variable.
2020-03-02 23:05:49 +01:00
11ab52888d
gnu: Add r-zvcv.
...
* gnu/packages/cran.scm (r-zvcv): New variable.
2020-03-02 23:05:49 +01:00
505d6716d0
gnu: Add r-zyp.
...
* gnu/packages/cran.scm (r-zyp): New variable.
2020-03-02 23:05:49 +01:00
7316f137dc
gnu: Add r-kendall.
...
* gnu/packages/cran.scm (r-kendall): New variable.
2020-03-02 23:05:49 +01:00
1639e0b7b6
gnu: python-smmap: Update to version 3.0.1, deprecate python-smmap2.
...
* gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and
update to version 3.0.1.
(python-smmap2, python2-smmap2): Preserve original bindings, marked as
deprecated.
* gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend
on the new python-smmap package.
2020-03-02 17:03:03 -05:00
166dbbb012
gnu: python-gitpython: Update to 3.1.0.
...
* gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.
2020-03-02 17:03:03 -05:00
cbe4272e6f
gnu: python-gitdb: Update to 4.0.2.
...
* gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2.
[source]: Correct the PyPI URL to refer to the actual gitdb package, not a
mirror. This mirror had a problematic setup.py install requirement that
required gitdb>=4.0.1, which would cause run time errors when using snakemake.
2020-03-02 17:03:03 -05:00
357af7f283
gnu: python-pyyaml: Update to 5.3.
...
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.
2020-03-02 17:03:02 -05:00
8c06d6d8ce
gnu: python-xenon: Update to 0.7.0.
...
* gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0.
[arguments]: Set #:tests? to #f to disable test suite.
2020-03-02 17:03:02 -05:00
f675ab4faf
gnu: python-radon: Update to 4.1.0.
...
* gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.
2020-03-02 17:03:02 -05:00
bd13705540
gnu: python-colorama: Update to 0.4.3.
...
* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.
2020-03-02 17:03:02 -05:00
9c9704a9d7
gnu: Add python-wget.
...
* gnu/packages/python-xyz.scm (python-wget): New variable.
2020-03-02 17:03:02 -05:00
1eee899617
gnu: emacs-windower: Fix description.
...
* gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in
description.
2020-03-02 22:59:57 +01:00
7a4b2da48f
gnu: r-forcats: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.
2020-03-02 21:53:49 +01:00
3f809fe875
gnu: r-testthat: Update to 2.3.2.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.
2020-03-02 21:53:48 +01:00
d82a17ebaa
gnu: r-openmx: Update to 2.17.3.
...
* gnu/packages/cran.scm (r-openmx): Update to 2.17.3.
2020-03-02 21:53:48 +01:00
2d063d4535
gnu: r-summarytools: Update to 0.9.6.
...
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.
2020-03-02 21:53:48 +01:00
bbba65e269
gnu: r-officer: Update to 0.3.7.
...
* gnu/packages/cran.scm (r-officer): Update to 0.3.7.
[propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.
2020-03-02 21:53:48 +01:00
1284df4ef6
gnu: r-seqminer: Update to 8.0.
...
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.
2020-03-02 21:53:48 +01:00
b4034d1bc4
gnu: ecl-clunit: Use HTTPS home page.
...
* gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
711ebe771e
gnu: mapnik: Use HTTPS home page.
...
* gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
4e5ad79e4d
gnu: python-rq: Use HTTPS home page.
...
* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
35e74723b5
gnu: java-plexus-interpolation: Use HTTPS home page.
...
* gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
c99f0e5780
gnu: amsynth: Use HTTPS home page.
...
* gnu/packages/music.scm (amsynth)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
a369682826
gnu: pootle: Use HTTPS home page.
...
* gnu/packages/django.scm (pootle)[home-page]: Use HTTPS.
2020-03-02 21:46:27 +01:00
9bbb492042
gnu: muse-sequencer: Update home page.
...
* gnu/packages/music.scm (muse-sequencer)[home-page]: Follow (HTTPS)
redirection.
2020-03-02 21:46:27 +01:00
ba6b48b84f
gnu: opensmtpd: Support ECDSA certificates.
...
The required libressl version is now stable and more featureful than
openssl.
* gnu/packages/mail.scm (opensmtpd)[inputs]: Replace openssl with libressl.
2020-03-02 21:46:27 +01:00
0250672b97
gnu: libressl: Update to 3.0.2.
...
* gnu/packages/tls.scm (libressl): Update to 3.0.2.
2020-03-02 21:46:27 +01:00
b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
2020-03-02 21:46:27 +01:00
45a2636a0b
gnu: emacs-modus-themes: Update to 0.6.0.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.6.0.
2020-03-02 21:37:15 +01:00
8e1f5aaba2
gnu: Syncthing: Fix installation of the 'util' package output.
...
* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the 'install' phase.
2020-03-02 15:36:21 -05:00
7b1ba1e4fc
gnu: librsvg-next: Fix cargo dependency.
...
* gnu/packages/gnome.scm (librsvg-next-source): Don't hardcode patch
version of cargo inputs.
2020-03-02 22:11:16 +02:00
597f41ca49
gnu: rust-diff-0.1: Update to 0.1.12.
...
* gnu/packages/crates-io.scm (rust-diff-0.1): Update to 0.1.12.
[arguments]: Replace rust-quickcheck-0.8 with 0.9 in
cargo-development-inputs.
2020-03-02 22:09:04 +02:00
4b309aad04
gnu: rust-defmac-0.2: Don't skip build.
...
* gnu/packages/crates-io.scm (rust-defmac-0.2)[arguments]: Don't skip
build.
2020-03-02 21:58:22 +02:00
64a28fd6e1
gnu: rust-datetime-0.4: Don't skip build.
...
* gnu/packages/crates-io.scm (rust-datetime-0.4)[arguments]: Don't skip
build. Add rust-regex-0.1 to cargo-development-inputs.
2020-03-02 21:56:54 +02:00
49877d9fd6
gnu: rust-constant-time-eq-0.1: Don't skip build.
...
* gnu/packages/crates-io.scm (rust-constant-time-eq-0.1)[arguments]:
Don't skip build.
2020-03-02 21:48:02 +02:00
bdcec7028c
gnu: debootstrap: Update to 1.0.119.
...
* gnu/packages/debian.scm (debootstrap): Update to 1.0.119.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-03-02 21:33:28 +02:00
c1febbbf94
gnu: vim: Update to 8.2.0343.
...
* gnu/packages/vim.scm (vim): Update to 8.2.0343.
2020-03-02 10:40:34 +02:00
5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
2020-03-01 23:38:33 +01:00
e766ba9a52
gnu: r-cicero: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
2020-03-01 23:38:26 +01:00
0a30342def
gnu: r-mlinterfaces: Update to 1.66.4.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
2020-03-01 23:38:19 +01:00
aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
2020-03-01 23:38:12 +01:00
8351faae8a
gnu: r-chippeakanno: Update to 3.20.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
2020-03-01 23:38:06 +01:00
f73b75e00c
gnu: r-hdf5array: Update to 1.14.3.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
2020-03-01 23:37:58 +01:00
6c1f5a1b7e
gnu: r-rsamtools: Update to 2.2.3.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
2020-03-01 23:37:52 +01:00
9bbf3f9de2
gnu: r-edger: Update to 3.28.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
2020-03-01 23:37:40 +01:00
efb98dd09d
gnu: gwl: Update to 0.2.1.
...
* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".
2020-03-01 23:21:18 +01:00
42c7f6e748
gnu: r-nloptr: Update to 1.2.2.
...
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.
2020-03-01 23:21:18 +01:00
b3be560e23
gnu: r-gplots: Update to 3.0.3.
...
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.
2020-03-01 23:21:18 +01:00
8bcbb67c17
gnu: r-mvtnorm: Update to 1.1-0.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.
2020-03-01 23:21:18 +01:00
2589dc4b50
gnu: r-rlang: Update to 0.4.5.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.
2020-03-01 23:21:18 +01:00
fb93e2f539
gnu: r-digest: Update to 0.6.25.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.
2020-03-01 23:21:18 +01:00
51d36a12b7
gnu: r-nnet: Update to 7.3-13.
...
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.
2020-03-01 23:21:18 +01:00
e3eb7ee474
gnu: r-seurat: Update to 3.1.4.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4.
[propagated-inputs]: Add r-patchwork.
2020-03-01 23:21:17 +01:00
339fa00a98
gnu: r-wgcna: Update to 1.69.
...
* gnu/packages/cran.scm (r-wgcna): Update to 1.69.
[propagated-inputs]: Remove r-robust.
2020-03-01 23:21:17 +01:00
78acab4818
gnu: r-quanteda: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0.
[propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add
r-jsonlite.
2020-03-01 23:21:17 +01:00
2fc3575608
gnu: r-gdina: Update to 2.7.9.
...
* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.
2020-03-01 23:21:17 +01:00
0c51197b3c
gnu: r-subplex: Update to 1.6.
...
* gnu/packages/cran.scm (r-subplex): Update to 1.6.
2020-03-01 23:21:17 +01:00
ecbae383d8
gnu: r-rpf: Update to 1.0.3.
...
* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.
2020-03-01 23:21:17 +01:00
2a216f5a5f
gnu: r-dalex: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.
2020-03-01 23:21:17 +01:00
79f7e127ea
gnu: r-styler: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-styler): Update to 1.3.2.
2020-03-01 23:21:17 +01:00
cd4a4eafcc
gnu: r-gridgraphics: Update to 0.5-0.
...
* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.
2020-03-01 23:21:17 +01:00
851e576213
gnu: r-protviz: Update to 0.6.3.
...
* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.
2020-03-01 23:21:17 +01:00
5144de4b1d
gnu: r-rvcheck: Update to 0.1.8.
...
* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.
2020-03-01 23:21:17 +01:00
d41528b093
gnu: r-rcppannoy: Update to 0.0.15.
...
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.
2020-03-01 23:21:17 +01:00
19b0b54ed1
gnu: r-mvabund: Update to 4.1.3.
...
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.
2020-03-01 23:21:16 +01:00
a0077446a1
gnu: r-manipulatewidget: Update to 0.10.1.
...
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.
2020-03-01 23:21:16 +01:00
0fab5a4769
gnu: r-effectsize: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.
2020-03-01 23:21:16 +01:00
1bd8563322
gnu: r-factominer: Update to 2.3.
...
* gnu/packages/cran.scm (r-factominer): Update to 2.3.
2020-03-01 23:21:16 +01:00
a670564929
gnu: r-tinytex: Update to 0.20.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.20.
2020-03-01 23:21:16 +01:00
f7dc4f7bfd
gnu: r-uuid: Update to 0.1-4.
...
* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.
2020-03-01 23:21:16 +01:00
d67f83072c
gnu: r-broom: Update to 0.5.5.
...
* gnu/packages/cran.scm (r-broom): Update to 0.5.5.
2020-03-01 23:21:16 +01:00
353b3515a6
gnu: r-cli: Update to 2.0.2.
...
* gnu/packages/cran.scm (r-cli): Update to 2.0.2.
2020-03-01 23:21:16 +01:00
8a9d551c8d
gnu: r-sp: Update to 1.4-1.
...
* gnu/packages/cran.scm (r-sp): Update to 1.4-1.
2020-03-01 23:21:16 +01:00
9e3a089b44
gnu: r-dendextend: Update to 1.13.4.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.4.
2020-03-01 23:21:16 +01:00
dfa052726a
gnu: r-modelr: Update to 0.1.6.
...
* gnu/packages/cran.scm (r-modelr): Update to 0.1.6.
[propagated-inputs]: Add r-tidyselect.
2020-03-01 23:21:15 +01:00
ade9158b62
gnu: r-matrix-utils: Update to 0.9.8.
...
* gnu/packages/cran.scm (r-matrix-utils): Update to 0.9.8.
2020-03-01 23:21:15 +01:00
975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0.
...
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
2020-03-01 23:21:15 +01:00
d4388c0bf6
gnu: emacs-relint: Update to 1.14.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.14.
2020-03-01 22:55:41 +01:00
Tobias Geerinckx-Rice
Leo Famulari
Marius Bakke
Ricardo Wurmus
Maxim Cournoyer
Nicolas Goaziou
Efraim Flashner
Vincent Legoll