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86531 Commits (91bb9baa95b7e22b1d5416d591f5b85444f82464)

Author SHA1 Message Date
Ricardo Wurmus 0396e479f7
gnu: r-rnexml: Update to 2.4.7.
* gnu/packages/cran.scm (r-rnexml): Update to 2.4.7.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus ad798636b8
gnu: r-flare: Update to 1.7.0.1.
* gnu/packages/cran.scm (r-flare): Update to 1.7.0.1.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus 9683a3bfa6
gnu: r-rspectra: Update to 0.16-1.
* gnu/packages/cran.scm (r-rspectra): Update to 0.16-1.
[native-inputs]: Add r-knitr.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus d408f8df2a
gnu: r-colorramps: Update to 2.3.1.
* gnu/packages/cran.scm (r-colorramps): Update to 2.3.1.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus 13dc616316
gnu: r-admisc: Update to 0.27.
* gnu/packages/cran.scm (r-admisc): Update to 0.27.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus 11e13a213d
gnu: r-ouch: Update to 2.18.
* gnu/packages/cran.scm (r-ouch): Update to 2.18.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus 9d96f5c9c5
gnu: r-activity: Update to 1.3.2.
* gnu/packages/cran.scm (r-activity): Update to 1.3.2.
[propagated-inputs]: Remove r-circular.
2022-05-28 23:18:51 +02:00
Ricardo Wurmus e1048c8ef5
gnu: r-circular: Update to 0.4-95.
* gnu/packages/cran.scm (r-circular): Update to 0.4-95.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus 3db089a292
gnu: r-ks: Update to 1.13.5.
* gnu/packages/cran.scm (r-ks): Update to 1.13.5.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus 9f4b3bfec5
gnu: r-rgl: Update to 0.108.3.2.
* gnu/packages/cran.scm (r-rgl): Update to 0.108.3.2.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus b4ad23fd8d
gnu: r-biocmanager: Update to 1.30.18.
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.18.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus c64d37aa2d
gnu: r-afex: Update to 1.1-1.
* gnu/packages/cran.scm (r-afex): Update to 1.1-1.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus 41261ba3c8
gnu: r-summarytools: Update to 1.0.1.
* gnu/packages/cran.scm (r-summarytools): Update to 1.0.1.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus d90ccca7a4
gnu: r-usethis: Update to 2.1.6.
* gnu/packages/cran.scm (r-usethis): Update to 2.1.6.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus 1a4f4cc6f5
gnu: r-effectsize: Update to 0.7.0.
* gnu/packages/cran.scm (r-effectsize): Update to 0.7.0.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus 50f2249e19
gnu: r-bayestestr: Update to 0.12.1.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.12.1.
2022-05-28 23:18:50 +02:00
Ricardo Wurmus 142ce27e7a
gnu: r-tmb: Update to 1.9.0.
* gnu/packages/cran.scm (r-tmb): Update to 1.9.0.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus b56c3b790c
gnu: r-emmeans: Update to 1.7.4-1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.4-1.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus 847c134325
gnu: r-multcomp: Update to 1.4-19.
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-19.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus 0d606a229e
gnu: r-th-data: Update to 1.1-1.
* gnu/packages/cran.scm (r-th-data): Update to 1.1-1.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus 80730da84e
gnu: r-furrr: Update to 0.3.0.
* gnu/packages/cran.scm (r-furrr): Update to 0.3.0.
[propagated-inputs]: Remove r-ellipsis.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus f230bab5d9
gnu: r-svdialogs: Update to 1.1.0.
* gnu/packages/cran.scm (r-svdialogs): Update to 1.1.0.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus bf192c0bef
gnu: r-labelled: Update to 2.9.1.
* gnu/packages/cran.scm (r-labelled): Update to 2.9.1.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus c00b0070bf
gnu: r-dofuture: Update to 0.12.2.
* gnu/packages/cran.scm (r-dofuture): Update to 0.12.2.
2022-05-28 23:18:49 +02:00
Ricardo Wurmus 256e1f2358
gnu: r-drtmle: Update to 1.1.1.
* gnu/packages/cran.scm (r-drtmle): Update to 1.1.1.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 2bdc02ca09
gnu: r-cmplot: Update to 4.1.0.
* gnu/packages/cran.scm (r-cmplot): Update to 4.1.0.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 5ac39e4738
gnu: r-doby: Update to 4.6.13.
* gnu/packages/cran.scm (r-doby): Update to 4.6.13.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 65a0fa0dd3
gnu: r-argparse: Update to 2.1.5.
* gnu/packages/cran.scm (r-argparse): Update to 2.1.5.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 054842979e
gnu: r-insight: Update to 0.17.1.
* gnu/packages/cran.scm (r-insight): Update to 0.17.1.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 45e709aba9
gnu: r-rjags: Update to 4-13.
* gnu/packages/cran.scm (r-rjags): Update to 4-13.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 87439c8a9a
gnu: r-nbclust: Update to 3.0.1.
* gnu/packages/cran.scm (r-nbclust): Update to 3.0.1.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 7e9031c41d
gnu: r-reticulate: Update to 1.25.
* gnu/packages/cran.scm (r-reticulate): Update to 1.25.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus ad26dda851
gnu: r-renv: Update to 0.15.5.
* gnu/packages/cran.scm (r-renv): Update to 0.15.5.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 02c4b86cf3
gnu: r-maptools: Update to 1.1-4.
* gnu/packages/cran.scm (r-maptools): Update to 1.1-4.
2022-05-28 23:18:48 +02:00
Ricardo Wurmus 64c6f89671
gnu: r-abc: Update to 2.2.1.
* gnu/packages/cran.scm (r-abc): Update to 2.2.1.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus 24dd853022
gnu: r-fnn: Update to 1.1.3.1.
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.1.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus da073f7f84
gnu: r-algdesign: Update to 1.2.1.
* gnu/packages/cran.scm (r-algdesign): Update to 1.2.1.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus b2a592537f
gnu: r-radiant-data: Update to 1.4.2.
* gnu/packages/cran.scm (r-radiant-data): Update to 1.4.2.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus d10b32c7ed
gnu: r-shinyace: Update to 0.4.2.
* gnu/packages/cran.scm (r-shinyace): Update to 0.4.2.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus 91c053804d
gnu: r-import: Update to 1.3.0.
* gnu/packages/cran.scm (r-import): Update to 1.3.0.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus ea5ade6de0
gnu: r-tseries: Update to 0.10-51.
* gnu/packages/cran.scm (r-tseries): Update to 0.10-51.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus 336d2a712c
gnu: r-quantmod: Update to 0.4.20.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.20.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus 20e8098845
gnu: r-statnet-common: Update to 4.6.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.6.0.
2022-05-28 23:18:47 +02:00
Ricardo Wurmus 4b71cb9303
gnu: r-network: Update to 1.17.2.
* gnu/packages/cran.scm (r-network): Update to 1.17.2.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 29e58b9278
gnu: r-tinytex: Update to 0.39.
* gnu/packages/cran.scm (r-tinytex): Update to 0.39.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus fb302963e4
gnu: r-uuid: Update to 1.1-0.
* gnu/packages/cran.scm (r-uuid): Update to 1.1-0.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus c0d9536403
gnu: r-vctrs: Update to 0.4.1.
* gnu/packages/cran.scm (r-vctrs): Update to 0.4.1.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 9bce612543
gnu: r-xfun: Update to 0.31.
* gnu/packages/cran.scm (r-xfun): Update to 0.31.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 8defafa742
gnu: r-webshot: Update to 0.5.3.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.3.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus c95a8f8488
gnu: r-cli: Update to 3.3.0.
* gnu/packages/cran.scm (r-cli): Update to 3.3.0.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 7bf051be75
gnu: r-venndiagram: Update to 1.7.3.
* gnu/packages/cran.scm (r-venndiagram): Update to 1.7.3.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 83b90cc4a1
gnu: r-hardyweinberg: Update to 1.7.5.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.5.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 2ccb1881d4
gnu: r-pdist: Update to 1.2.1.
* gnu/packages/cran.scm (r-pdist): Update to 1.2.1.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 63993ae9e0
gnu: r-broom: Update to 0.8.0.
* gnu/packages/cran.scm (r-broom): Update to 0.8.0.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus a03033dde1
gnu: r-psych: Update to 2.2.5.
* gnu/packages/cran.scm (r-psych): Update to 2.2.5.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus f8f43d685e
gnu: r-geometry: Update to 0.4.6.
* gnu/packages/cran.scm (r-geometry): Update to 0.4.6.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 99206a360f
gnu: r-energy: Update to 1.7-10.
* gnu/packages/cran.scm (r-energy): Update to 1.7-10.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus e5eec206ae
gnu: r-bbmle: Update to 1.0.25.
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.25.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 3651780fc2
gnu: r-extremes: Update to 2.1-2.
* gnu/packages/cran.scm (r-extremes): Update to 2.1-2.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 69d208b4de
gnu: r-rmtstat: Update to 0.3.1.
* gnu/packages/cran.scm (r-rmtstat): Update to 0.3.1.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 8fa3e9f513
gnu: r-sp: Update to 1.4-7.
* gnu/packages/cran.scm (r-sp): Update to 1.4-7.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 9879432da2
gnu: r-restrserve: Update to 1.1.1.
* gnu/packages/cran.scm (r-restrserve): Update to 1.1.1.
[propagated-inputs]: Add r-digest.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 20cbdd3d2d
gnu: r-reshape: Update to 0.8.9.
* gnu/packages/cran.scm (r-reshape): Update to 0.8.9.
[propagated-inputs]: Remove r-rcpp.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 51bc637839
gnu: r-ff: Update to 4.0.7.
* gnu/packages/cran.scm (r-ff): Update to 4.0.7.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus c02dbd5c80
gnu: r-circlize: Update to 0.4.15.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.15.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 9c33d6688d
gnu: r-rcppxptrutils: Update to 0.1.2.
* gnu/packages/cran.scm (r-rcppxptrutils): Update to 0.1.2.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 30fc048229
gnu: r-ps: Update to 1.7.0.
* gnu/packages/cran.scm (r-ps): Update to 1.7.0.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 3a389207b5
gnu: r-haven: Update to 2.5.0.
* gnu/packages/cran.scm (r-haven): Update to 2.5.0.
[propagated-inputs]: Add r-cli and r-lifecycle.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus dea8ee293e
gnu: r-shinyfiles: Update to 0.9.2.
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.2.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 1baffaf491
gnu: r-rstpm2: Update to 1.5.6.
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.6.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 33756c6ed5
gnu: r-fastghquad: Update to 1.0.1.
* gnu/packages/cran.scm (r-fastghquad): Update to 1.0.1.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 20739d83a7
gnu: r-vegan: Update to 2.6-2.
* gnu/packages/cran.scm (r-vegan): Update to 2.6-2.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus 5128750299
gnu: r-astsa: Update to 1.15.
* gnu/packages/cran.scm (r-astsa): Update to 1.15.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus d4241d5af6
gnu: r-shadowtext: Update to 0.1.2.
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.2.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus fd8062128b
gnu: r-mboost: Update to 2.9-7.
* gnu/packages/cran.scm (r-mboost): Update to 2.9-7.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus 819d200a0b
gnu: r-polychrome: Update to 1.5.1.
* gnu/packages/cran.scm (r-polychrome): Update to 1.5.1.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus 9d83753c40
gnu: r-scales: Update to 1.2.0.
* gnu/packages/cran.scm (r-scales): Update to 1.2.0.
[propagated-inputs]: Add r-rlang.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus fbac14dd28
gnu: r-zoo: Update to 1.8-10.
* gnu/packages/cran.scm (r-zoo): Update to 1.8-10.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus a075d93dfc
gnu: r-v8: Update to 4.2.0.
* gnu/packages/cran.scm (r-v8): Update to 4.2.0.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus d4e4cf21b8
gnu: r-datawizard: Update to 0.4.1.
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.1.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 32a3b09c51
gnu: r-abn: Update to 2.7-1.
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 3360f14b08
gnu: r-ldheatmap: Update to 1.0-6.
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 3ceaa41e67
gnu: r-wgcna: Update to 1.71.
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus ac12a57b78
gnu: r-activepathways: Update to 1.1.0.
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 43e82253c1
gnu: r-with-tests: Update to 4.2.0.
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.0.
[arguments]: Add phase 'patch-tests; add phase 'set-home.
2022-05-28 23:18:42 +02:00
Efraim Flashner 0542905a2c
gnu: wget2: Reindent package.
* gnu/packages/wget.scm (wget2): Reindent package with 'guix style'.
2022-05-28 22:23:32 +03:00
Efraim Flashner 81803c5eaa
gnu: wget2: Update to 2.0.1.
* gnu/packages/wget.scm (wget2): Update to 2.0.1.
[arguments]: Remove trailing #t from phases.
2022-05-28 22:18:40 +03:00
Efraim Flashner 39227724e8
gnu: mesa: Build with llvm on armhf-linux.
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm for all architectures.
[native-inputs]: Add glslang for all architectures.
[arguments]: Adjust configure-flags to give armhf-linux its own
gallium-drivers and enable llvm support. Rewrite portions that no longer
depend on specific architectures to enable flags. Adjust custom
'disable-failing-test phase to skip a test on armhf-linux.
2022-05-28 22:02:36 +03:00
Efraim Flashner 4a53069b38
gnu: clang-from-llvm: Fix build on some architectures.
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Adjust custom
'symlink-cfi_ignorelist phase to only symlink when the file exists.
2022-05-28 22:02:35 +03:00
Liliana Marie Prikler cc0401a9de
gnu: quodlibet: Fix inputs.
* gnu/packages/music.scm (quodlibet)[inputs]: Add bash-minimal for
‘wrap-program’.  Remove extraneous gtk+.
2022-05-28 17:28:39 +02:00
Remco van 't Veer 092ec158f7
gnu: Add quodlibet.
* gnu/packages/music.scm (quodlibet): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28 13:02:19 +02:00
Liliana Marie Prikler 2a97acbe3d
gnu: emacs-magit: Use directory excursions rather than wild chdir.
* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases]
<build-info-manual, configure-git>: Don't chdir.
<set-magit-version, patch-exec-paths>: Use full file names.
<enter-lisp-directory>: Drop phase.
<expand-load-path, install>: Wrap in directory excursions.
2022-05-28 08:49:41 +02:00
Zhu Zihao 9368341092
gnu: emacs-magit: Drop the libgit backend.
The libgit backend currently provides next to no features, but
demands extra maintenance overhead.  It is in fact not a usable
backend; thus let's not use it.

* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]
<#:emacs>: Drop argument.
<#:exclude>: Add sources related to emacs-libgit.
[inputs]: Remove emacs-libgit.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28 08:34:25 +02:00
Zhu Zihao 0bb6504ba6
gnu: emacs-magit: Use G-expressions.
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Use G-expressions.
<#:phases>: Use search-input-file to find perl for ‘patch-exec-paths’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28 08:34:25 +02:00
Vagrant Cascadian 83f444de56
gnu: diffoscope: Update to 214.
* gnu/packages/diffoscope.scm (diffoscope): Update to 214.
  [arguments]: Remove 'xb-tool-external-tool phase.
2022-05-27 15:16:16 -07:00
Wamm K. D cfc6bcee4c
gnu: Add python-gatt.
* gnu/packages/python-xyz.scm (python-gatt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-28 00:02:56 +02:00
Pradana AUMARS 5bfb7ebe5d
gnu: Add python-srt.
* gnu/packages/python-xyz (python-srt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27 23:34:29 +02:00
Artyom V. Poptsov 6caac30e44
gnu: Add python-wasabi.
* gnu/packages/python-xyz.scm (python-wasabi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27 23:30:00 +02:00
jgart eefff9fb74
gnu: emacs-evil-org: Update to 0d10ff7.
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 0d10ff7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27 23:23:45 +02:00
Niklas Eklund 3a5540a12c
gnu: emacs-detached: Update to 0.7.
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.7.
(emacs-dtache): Define as a deprecated alias.

I have both renamed the package dtache -> detached as well as moving the
development from gitlab to sourcehut. This patch reflects those changes, as
well as updating to the latest release of the package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27 23:19:13 +02:00