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105130 Commits (930fab74f2a3ec3beec9574f2803babc62ac1c56)

Author SHA1 Message Date
zimoun 930fab74f2
gnu: r-assessorf: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.16.0.
 2022-11-24 12:31:14 +01:00
zimoun dfb78fd76e
gnu: r-aspli: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.8.0.
 2022-11-24 12:31:14 +01:00
zimoun b89305c18d
gnu: r-asgsca: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.32.0.
 2022-11-24 12:31:14 +01:00
zimoun 110f0f8483
gnu: r-aseb: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.42.0.
 2022-11-24 12:31:14 +01:00
zimoun 1114e837a9
gnu: r-antiprofiles: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.38.0.
 2022-11-24 12:31:13 +01:00
zimoun bc62494bc8
gnu: r-annmap: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.40.0.
 2022-11-24 12:31:13 +01:00
zimoun d18f8e367e
gnu: r-anf: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-anf): Update to 1.20.0.
 2022-11-24 12:31:13 +01:00
zimoun cbeefda563
gnu: r-aneufinder: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.26.0.
 2022-11-24 12:31:13 +01:00
zimoun eddbd27be5
gnu: r-aldex2: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.30.0.
 2022-11-24 12:31:13 +01:00
zimoun 190ed5f137
gnu: r-anaquin: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.22.0.
 2022-11-24 12:31:13 +01:00
zimoun ecb91b3404
gnu: r-amaretto: Update to 1.13.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.13.0.
 2022-11-24 12:31:13 +01:00
zimoun c9c4d6b501
gnu: r-amountain: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.24.0.
 2022-11-24 12:31:13 +01:00
zimoun f217ff6463
gnu: r-airpart: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.6.0.
 2022-11-24 12:31:13 +01:00
zimoun fb7a1b340b
gnu: r-agimicrorna: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.48.0.
 2022-11-24 12:31:12 +01:00
zimoun 5d09a99174
gnu: r-adductomicsr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.14.0.
 2022-11-24 12:31:12 +01:00
zimoun e153f4904d
gnu: r-agilp: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.30.0.
 2022-11-24 12:31:12 +01:00
zimoun fc60b9dfe7
gnu: r-aggregatebiovar: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.8.0.
 2022-11-24 12:31:12 +01:00
zimoun f74c670c7f
gnu: r-agdex: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.46.0.
 2022-11-24 12:31:12 +01:00
zimoun 014fc145f8
gnu: r-affyrnadegradation: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.44.0.
 2022-11-24 12:31:12 +01:00
zimoun 69ecae7801
gnu: r-affixcan: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.16.0.
 2022-11-24 12:31:12 +01:00
zimoun b772bc7f75
gnu: r-adsplit: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.68.0.
 2022-11-24 12:31:12 +01:00
zimoun daf0729533
gnu: r-adimpute: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.8.0.
 2022-11-24 12:31:12 +01:00
zimoun a62284ad13
gnu: r-adamgui: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.14.0.
 2022-11-24 12:31:12 +01:00
zimoun 38fc0acf4d
gnu: r-adam: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.14.0.
 2022-11-24 12:31:11 +01:00
zimoun f24085bfb3
gnu: r-absseq: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.52.0.
 2022-11-24 12:31:11 +01:00
zimoun 349804b602
gnu: r-abarray: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.66.0.
 2022-11-24 12:31:11 +01:00
zimoun 8f67799a1b
gnu: Add r-gson. 
* gnu/packages/cran.scm (r-gson): New variable.
 2022-11-24 12:31:11 +01:00
zimoun 176fd3b052
gnu: Add r-rorcid. 
* gnu/packages/cran.scm (r-rorcid): New variable.
 2022-11-24 12:31:11 +01:00
zimoun 3d073b86d3
gnu: Add r-biocbaseutils. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): New variable.
 2022-11-24 12:31:11 +01:00
zimoun e273f52358
gnu: r-ggprism: Update to 1.0.4. 
* gnu/packages/cran.scm (r-ggprism): Update to 1.0.4.
 2022-11-24 12:31:11 +01:00
zimoun c70207ae3b
gnu: r-ggplot2: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.0.
[propagated-inputs]: Add r-cli, r-lifecycle, and r-vctrs.
 2022-11-24 12:31:11 +01:00
zimoun 8105b3c09f
gnu: Add r-hdo-db. 
* gnu/packages/bioconductor.scm (r-hdo-db): New variable.
 2022-11-24 12:31:11 +01:00
zimoun f4a7ccc976
guix: Upgrade to Bioconductor 3.16. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.16.
* guix/import/cran.scm (%bioconductor-version): Same.
 2022-11-24 12:31:11 +01:00
conses 68113dc249
gnu: Add whoogle-search. 
* gnu/packages/python-web.scm (whoogle-search): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Bruno Victal 42898ae8ca
gnu: Add mympd. 
* gnu/packages/mpd.scm (mympd): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner 963e86af87
gnu: Add hebcal. 
* gnu/packages/calendar.scm (hebcal): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner 4ca2159bab
gnu: Add go-github-com-hebcal-hebcal-go. 
* gnu/packages/golang.scm (go-github-com-hebcal-hebcal-go): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner b0307b7c12
gnu: Add go-github-com-hebcal-gematriya. 
* gnu/packages/golang.scm (go-github-com-hebcal-gematriya): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner 58eef1a258
gnu: Add go-github-com-nathan-osman-go-sunrise. 
* gnu/packages/golang.scm (go-github-com-nathan-osman-go-sunrise): New
variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:24 +00:00
Paul A. Patience 8bde62d174
gnu: Add cl-tar. 
* gnu/packages/lisp-xyz.scm (sbcl-tar, cl-tar, ecl-tar): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:16:50 +01:00
Paul A. Patience b0c392ffcf
gnu: Add cl-tar-file. 
* gnu/packages/lisp-xyz.scm (sbcl-tar-file, cl-tar-file, ecl-tar-file):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:11:18 +01:00
Paul A. Patience 8a620036d7
gnu: Add cl-40ants-doc. 
* gnu/packages/lisp-xyz.scm (sbcl-40ants-doc, cl-40ants-doc,
  ecl-40ants-doc): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:06:21 +01:00
kiasoc5 4a97591d0a
gnu: btrfs-progs: Update to 6.0.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 6.0.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:15:58 +08:00
kiasoc5 6e142c69bd
gnu: xfsprogs: Update to 6.0.0. 
* gnu/packages/linux.scm (xfsprogs): Update to 6.0.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:13:01 +08:00
jgart 148c75e75e
gnu: clasp: Update to 3.3.9. 
* gnu/packages/maths.scm (clasp): Update to 3.3.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:08:54 +08:00
Simen Endsjø c4bbdaf2db
gnu: font-iosevka: Update to 16.4.0. 
* gnu/packages/fonts.scm (font-iosevka): Update to 16.4.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:07:11 +08:00
Tobias Geerinckx-Rice 22d44f8776
doc: Note that ‘guix package’ accepts file names. 
* doc/guix.texi (Package Management)[Invoking guix package]:
Mention support for operating on store file names.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2022-11-20 01:00:00 +01:00
Ludovic Courtès d33ed58169
offload: Increase default 'overload-threshold' value. 
When offloading to a single machine, the previous default value would
lead 'guix offload' to wait possibly for several minutes between
subsequent builds until normalized load would finally go below 0.6.
Increasing it mitigates that.

* guix/scripts/offload.scm (<build-machine>)[overload-threshold]: Bump
to 0.8.
* doc/guix.texi (Daemon Offload Setup): Likewise.
 2022-11-23 19:34:42 +01:00
Ludovic Courtès 02a4e54250
gnu: grep: Skip 'triple-backref' test. 
* gnu/packages/base.scm (grep)[arguments]: Add
'skip-triple-backref-test' phase for GNU/Hurd.
 2022-11-23 19:34:42 +01:00
Ludovic Courtès 2b151eb286
gnu: gettext: Skip Gnulib tests that fail on GNU/Hurd. 
* gnu/packages/gettext.scm (gettext-minimal)[arguments]: In
'patch-tests' phase, arrange to not run 'test-tls'.  Adjust
'XFAIL_TESTS' flag passed to #:make-flags.
 2022-11-23 19:34:42 +01:00