Ricardo Wurmus
|
04b181cb15
|
gnu: r-topgo: Update to 2.38.1.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.38.1.
|
2019-12-27 21:30:25 +01:00 |
|
Ricardo Wurmus
|
4997ff5c1b
|
gnu: r-summarizedexperiment: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.1.
|
2019-12-27 21:30:25 +01:00 |
|
Ricardo Wurmus
|
ba17429d67
|
gnu: r-delayedarray: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.1.
|
2019-12-27 21:30:25 +01:00 |
|
Ricardo Wurmus
|
152a408051
|
gnu: r-biocparallel: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.1.
|
2019-12-27 21:30:25 +01:00 |
|
Ricardo Wurmus
|
827d0fa846
|
gnu: r-shortread: Update to 1.44.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.1.
|
2019-12-27 21:30:21 +01:00 |
Brett Gilio
|
5bc95d2bcd
|
gnu: python-bbknn: Update to 1.3.6.
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.3.6.
[arguments]: Disable tests until migration to python-scikit-learn.
[propgated-inputs]: Remove python-faiss, python-scanpy.
[propgated-inputs]: Add python-scipy, python-umap-learn.
|
2019-12-23 17:31:06 -06:00 |
Mădălin Ionel Patrașcu
|
3bedd9f40f
|
gnu: tophat: Build with GCC 5
* gnu/packages/python-xyz.scm (tophat)[native-inputs]: Add gcc-5.
(tophat)[inputs]: Reorder alphabetically the dependencies.
(tophat)[home-page]: Swapp to https.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2019-12-23 19:38:14 +01:00 |
|
Mădălin Ionel Patrașcu
|
345488d76f
|
gnu: fastx-toolkit: Build with GCC 6
* gnu/packages/bioinformatics.scm (fastx-toolkit)[native-inputs]: Add gcc-6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2019-12-21 23:55:25 +01:00 |
|
Ricardo Wurmus
|
61e21c0899
|
gnu: r-scater: Update to 1.14.6.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.6.
|
2019-12-20 21:26:26 +01:00 |
|
Ricardo Wurmus
|
595036d9f9
|
gnu: Add libsbml.
* gnu/packages/bioinformatics.scm (libsbml): New variable.
|
2019-12-17 20:02:11 +01:00 |
|
Ricardo Wurmus
|
f98480a975
|
gnu: r-seurat: Update to 3.1.2.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.2.
|
2019-12-17 14:58:32 +01:00 |
|
Ricardo Wurmus
|
94f9c0cdc4
|
gnu: python-gffutils: Update description.
* gnu/packages/bioinformatics.scm (python-gffutils)[description]: Reflow
paragraph and fix spelling of SQLite.
|
2019-12-16 23:32:55 +01:00 |
|
Mădălin Ionel Patrașcu
|
cfd83f3282
|
gnu: Add python-gffutils.
* gnu/packages/bioinformatics.scm (python-gffutils): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
|
2019-12-16 23:27:00 +01:00 |
|
Mădălin Ionel Patrașcu
|
4ade2dd9d2
|
gnu: python-pyfaidx: Update to 0.5.7.
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.7.
|
2019-12-16 23:22:12 +01:00 |
|
Ricardo Wurmus
|
0726645eca
|
gnu: r-genefilter: Update to 1.68.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.68.0.
[propagated-inputs]: Remove r-s4vectors and add r-biocgenerics.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
867018e138
|
gnu: r-deseq2: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.26.0.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
ebc81e300c
|
gnu: r-dexseq: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.32.0.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
12c4555d44
|
gnu: r-annotationforge: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.28.0.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
33a2acb757
|
gnu: r-rbgl: Update to 1.62.1.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.62.1.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
d2661841be
|
gnu: r-gseabase: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.48.0.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
4afcf941d2
|
gnu: r-category: Update to 2.52.1.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.52.1.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
545730891e
|
gnu: r-gostats: Update to 2.52.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.52.0.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
f29c9f0d33
|
gnu: r-shortread: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.0.
|
2019-12-15 15:39:04 +01:00 |
|
Ricardo Wurmus
|
58fd68b299
|
gnu: r-systempiper: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.20.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
f8f815667d
|
gnu: r-grohmm: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.20.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
74d59b6748
|
gnu: r-biocviews: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.54.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
ef96154433
|
gnu: r-biocstyle: Update to 2.14.2.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.2.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
7758d5205c
|
gnu: r-bioccheck: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.22.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
d37daf8929
|
gnu: r-s4vectors: Update to 0.24.1.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.1.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
d2723484f6
|
gnu: r-iranges: Update to 2.20.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.1.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
937f3a46eb
|
gnu: r-genomeinfodb: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.22.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
da03fa3c90
|
gnu: r-edger: Update to 3.28.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
8f5d2c3abc
|
gnu: r-variantannotation: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.32.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
eea491e5c6
|
gnu: r-limma: Update to 3.42.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.0.
|
2019-12-15 15:39:03 +01:00 |
|
Ricardo Wurmus
|
da6edb199d
|
gnu: r-xvector: Update to 0.26.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.26.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
0202b13e8b
|
gnu: r-genomicranges: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.38.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
8d1c3666d7
|
gnu: r-biobase: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.46.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
de9ae3e7b1
|
gnu: r-annotationdbi: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.48.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
68a9d9f26a
|
gnu: r-biomart: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.42.0.
[propagated-inputs]: Add r-biocfilecache, r-openssl, and r-rappdirs; remove
r-rcurl.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
5854a4a265
|
gnu: r-biocparallel: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
15cd3f6ef5
|
gnu: r-biostrings: Update to 2.54.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.54.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
e1d681e2af
|
gnu: r-rsamtools: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.1.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
4ada4fb745
|
gnu: r-delayedarray: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
264db038c6
|
gnu: r-summarizedexperiment: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.0.
|
2019-12-15 15:39:02 +01:00 |
|
Ricardo Wurmus
|
55e515d206
|
gnu: r-genomicalignments: Update to 1.22.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.22.1.
|
2019-12-15 15:39:01 +01:00 |
|
Ricardo Wurmus
|
15187da9e7
|
gnu: r-rtracklayer: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.46.0.
|
2019-12-15 15:39:01 +01:00 |
|
Ricardo Wurmus
|
9fec340391
|
gnu: r-genomicfeatures: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.0.
|
2019-12-15 15:39:01 +01:00 |
|
Ricardo Wurmus
|
323f42b2ca
|
gnu: r-topgo: Update to 2.37.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.37.0.
|
2019-12-15 15:39:01 +01:00 |
|
Ricardo Wurmus
|
e3a2b96c80
|
gnu: r-bsgenome: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.54.0.
|
2019-12-15 15:39:01 +01:00 |
|
Ricardo Wurmus
|
bca1c45e4e
|
gnu: r-impute: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.60.0.
|
2019-12-15 15:39:01 +01:00 |