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Author SHA1 Message Date
Ricardo Wurmus c1e4110971
gnu: Add tensorflow-lite. 
* gnu/packages/machine-learning.scm (tensorflow-lite): New variable.
 2021-08-04 11:09:05 +02:00
Ricardo Wurmus aaae45b1f4
gnu: flatbuffers: Update to 2.0.0. 
* gnu/packages/serialization.scm (flatbuffers): Update to 2.0.0.
[source]: Fetch sources from git.
[arguments]: Make git checkout writable; Enable building shared library.
 2021-08-04 11:09:05 +02:00
Ricardo Wurmus eaf2111dbc
gnu: Add eigen-for-tensorflow-lite. 
* gnu/packages/algebra.scm (eigen-for-tensorflow-lite): New variable.
 2021-08-04 11:09:01 +02:00
Xinglu Chen 0cb26784fa
gnu: mercurial: Update to 5.8.1. 
* gnu/packages/version-control (mercurial): Update to 5.8.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-08-04 11:30:31 +03:00
Kyle Meyer 3b43665666
gnu: git-annex: Update to 8.20210803. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210803.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-08-04 11:05:54 +03:00
Guix Together d3ede451cf
gnu: Add bitwise. 
* gnu/packages/maths.scm (bitwise): New variable.

Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
Co-authored-by: Ryan Prior <rprior@protonmail.com>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-08-04 10:56:07 +03:00
Xinglu Chen e7d32b4bcc
gnu: fetchmail: Update to 6.4.20 [fixes CVE-2021-38386]. 
* gnu/packages/mail.scm (fetchmail): Update to 6.4.20.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-08-04 10:45:16 +03:00
Efraim Flashner 1914d24b45
gnu: gprolog: Update to 1.5.0. 
* gnu/packages/prolog.scm (gprolog): Update to 1.5.0.
[arguments]: Rename custom 'change-dir-n-fix-shells to 'change-dir and
remove substitution.
 2021-08-04 10:41:26 +03:00
Arun Isaac 5bf675cdaf
gnu: Add nncp. 
* gnu/packages/uucp.scm (nncp): New variable.
 2021-08-04 11:24:31 +05:30
Brice Waegeneire 92605326ae
services: guix: Use "match-record" in activation. 
It's more explicit to specify used fields instead of depending on their
position.

* gnu/services/base.scm (guix-activation): Replace "match" with
  "match-record".
 2021-08-04 06:36:50 +02:00
Maxim Cournoyer d0cc63ccc5
gnu: dehydrated: Follow up commit to 77e2df870b. 
* gnu/packages/tls.scm (dehydrated): Remove bogus, nested native-search-paths.
 2021-08-03 16:12:59 -04:00
Tobias Geerinckx-Rice 77e2df870b
gnu: dehydrated: Declare cURL's native search paths. 
* gnu/packages/tls.scm (dehydrated)[native-search-paths]: Use curl's.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-03 15:47:06 -04:00
Tobias Geerinckx-Rice c40516a567
gnu: Add scanbd. 
* gnu/packages/scanner.scm (scanbd): New public variable.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-03 15:14:14 -04:00
Maxim Cournoyer 448de3966e
gnu: zchunk: Patch references to the 'zstd' command line tool. 
Fixes https://issues.guix.gnu.org/49795.

* gnu/packages/compression.scm (zchunk)
[phases]{patch-paths}: New phase.
[inputs]: Add zstd.
[propagated-inputs]: Relabel the zstd "lib" as "zstd:lib".

Reported-by: Christopher Howard <christopher@librehacker.com>
 2021-08-03 14:32:01 -04:00
Ricardo Wurmus 69a4494af9
gnu: Add python-xxhash. 
* gnu/packages/digest.scm (python-xxhash): New variable.
 2021-08-03 10:43:08 +02:00
Ricardo Wurmus 2ab5d08fbe
gnu: Add r-spectre. 
* gnu/packages/bioinformatics.scm (r-spectre): New variable.
 2021-08-03 10:43:08 +02:00
Ricardo Wurmus 138a0f8ed6
gnu: Add r-rgeos. 
* gnu/packages/cran.scm (r-rgeos): New variable.
 2021-08-03 10:43:08 +02:00
Ricardo Wurmus 424515f9d0
gnu: Add r-qs. 
* gnu/packages/cran.scm (r-qs): New variable.
 2021-08-03 10:43:08 +02:00
Ricardo Wurmus e19a9eda25
gnu: Add r-rapiserialize. 
* gnu/packages/cran.scm (r-rapiserialize): New variable.
 2021-08-03 10:43:08 +02:00
Ricardo Wurmus 419315d4e6
gnu: Add r-stringfish. 
* gnu/packages/cran.scm (r-stringfish): New variable.
 2021-08-03 10:43:08 +02:00
Ricardo Wurmus eb632a28db
gnu: Add r-exactextractr. 
* gnu/packages/cran.scm (r-exactextractr): New variable.
 2021-08-03 10:43:08 +02:00
Maxim Cournoyer 10f554700c
Reinstate "services: Add a service for Jami." 
This reverts commit 4673f81793, which reverted
commit 69dcc24c9f with the fix detailed below.

Thanks to Christopher Baines for reporting the failure and proposing a fix.

* guix/self.scm (compiled-guix) [*system-test-modules*]: Add the test data
files via the 'extra-files' argument.
* gnu/local.mk (dist_patch_DATA): Move the tests/data/jami-dummy-account.dat
file to...
* gnu/local.mk (MODULES_NOT_COMPILED): ... here.
 2021-08-02 17:23:30 -04:00
Leo Famulari 0ae0d8b4ce
gnu: RawTherapee: Use HTTPS URLs. 
* gnu/packages/photo.scm (rawtherapee)[source, home-page]: Use HTTPS URLs.
 2021-07-27 12:34:57 -04:00
Maxim Cournoyer 4673f81793
Revert "services: Add a service for Jami." 
This reverts commit 69dcc24c9f.  It broke 'guix
pull'.
 2021-08-02 15:48:59 -04:00
Maxim Cournoyer 69dcc24c9f
services: Add a service for Jami. 
* gnu/services/telephony.scm (string-or-computed-file?)
(string-list?, account-fingerprint-list?): New procedures.
(maybe-string-list, maybe-account-fingerprint-list)
(maybe-boolean, maybe-string, jami-account-list): New configuration field
types.
(serialize-string-list, serialize-boolean, serialize-string)
(jami-account, jami-account->alist, jami-configuration)
(jami-account-list?, jami-account-list-maybe): New procedures.
(%jami-accounts): New variable.
(jami-configuration->command-line-arguments): New procedure.
(jami-dbus-session-activation, jami-shepherd-services): New procedures.
(jami-service-type): New variable.
* gnu/build/jami-service.scm: New file.
* gnu/tests/data/jami-dummy-account.dat: Likewise.
* gnu/tests/telephony.scm: Likewise.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register them.
* Makefile.am (SCM_TESTS): Register the test file.
(dist_patch_DATA): Register the new data file.
* doc/guix.texi (Telephony Services): Document it.
 2021-08-02 15:15:02 -04:00
Xinglu Chen 8e1f944218
services: configuration: Derive the default value from the package variable. 
If the type of a configuration field is a package, show the name of its
package *variable* as the default value.

* gnu/services/configuration.scm (generate-documentation){show-default}
{package->symbol}: New nested procedures.  Use them to format the field
entries.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-02 14:16:23 -04:00
Xinglu Chen ad945029a2
services: configuration: Uniformize the generated documentation. 
Make the formatting of the generated docs more consistent with the rest of the
docs in the “Services” section of the manual.

* gnu/services/configuration (generate-documentation): Represent the data type
documentation of a field using a DEFTP table rather than DEFTYPEVR elements.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-02 14:16:22 -04:00
Maxim Cournoyer 5b2b834269
build: shepherd: Use autoload to lazily bind Shepherd modules. 
Instead of imperative module-autoload! directives.

* gnu/build/shepherd.scm: Replace module-autoload! directives by autoload
arguments for define-module.
 2021-08-02 14:16:22 -04:00
Morgan Smith f12a35cfa2
gnu: qutebrowser: Update to 2.3.1. 
* gnu/packages/web-browsers.scm (qutebrowser): Update to 2.3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-08-02 19:34:55 +03:00
Ludovic Courtès 6da2b35b60
gnu: Add onnx-optimizer. 
* gnu/packages/machine-learning.scm (onnx-optimizer): New variable.
* gnu/packages/patches/onnx-optimizer-system-library.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-08-02 18:11:33 +02:00
Efraim Flashner bcde6cdaf2
gnu: zfs: Update source URI. 
* gnu/packages/file-systems.scm (zfs)[source]: Update to new upstream URI.
 2021-08-02 18:54:13 +03:00
raid5atemyhomework via Bug reports for GNU Guix cff43aa2fd
gnu: zfs: Update 2.1.0. 
* gnu/packages/file-systems.scm (zfs): Update to 2.1.0.
[arguments]: Adjust 'patch-source phase to add support for new
compatibility feature.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-08-02 18:49:49 +03:00
Pierre Langlois eb46c6c5c8
gnu: u-boot: Update to 2021.07. 
* gnu/packages/patches/u-boot-sifive-prevent-reloc-initrd-fdt.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bootloaders.scm (%u-boot-sifive-prevent-relocating-initrd-fdt):
New variable.
(u-boot): Update to 2021.07.
[native-inputs]: Add python-pycryptodomex.
(u-boot-2021.07): Delete variable.
(u-boot-tools)[arguments]: Adapt 'patch phase, disable failing test_spl test.
(u-boot-sifive-unmatched): Use default u-boot package.
(u-boot-pinebook-pro-rk3328): Use default u-boot package.
 2021-08-02 13:23:32 +01:00
Marius Bakke 536bec1ce5
gnu: zathura: Update to 0.4.8. 
* gnu/packages/pdf.scm (zathura): Update to 0.4.8.
 2021-08-01 23:19:29 +02:00
Marius Bakke 4a8a184278
gnu: girara: Update to 0.3.6. 
* gnu/packages/gtk.scm (girara): Update to 0.3.6.
 2021-08-01 23:19:29 +02:00
Marius Bakke be73c55ae5
gnu: sbcl-cl-libxml2: Remove duplicate input. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-libxml2)[native-inputs]: Remove SBCL-LIFT.
 2021-08-01 23:19:29 +02:00
Marius Bakke 5c121be1f9
gnu: python-django: Update to 3.2.5 [fixes CVE-2021-35042]. 
* gnu/packages/django.scm (python-django): Update to 3.2.5.
 2021-08-01 23:19:29 +02:00
Marius Bakke 3e5e10d51b
gnu: mg: Update to 20210609. 
* gnu/packages/text-editors.scm (mg): Update to 20210609.
[source](snippet): Remove trailing #t.
 2021-08-01 23:19:29 +02:00
Nicolas Goaziou 6e99e113e6
gnu: emacs-ts: Update to 0.2.2. 
* gnu/packages/emacs-xyz.scm (emacs-ts): Update to 0.2.2.
 2021-08-01 20:57:47 +02:00
Nicolas Goaziou c044940a67
gnu: emacs-magit: Update to 3.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.2.0.
 2021-08-01 20:56:05 +02:00
Nicolas Goaziou 9634f7f42e
gnu: emacs-eacl: Update to 2.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-eacl): Update to 2.1.0.
 2021-08-01 20:54:14 +02:00
Arun Isaac 5b6447fcce
gnu: Add go-github-com-klauspost-compress. 
* gnu/packages/golang.scm (go-github-com-klauspost-compress): New variable.
 2021-08-01 19:46:58 +05:30
Arun Isaac 7aa2972bfa
gnu: Add go-github-com-flynn-noise. 
* gnu/packages/golang.scm (go-github-com-flynn-noise): New variable.
 2021-08-01 19:20:27 +05:30
Arun Isaac c94683e017
gnu: Add go-golang-org-x-term. 
* gnu/packages/golang.scm (go-golang-org-x-term): New variable.
 2021-08-01 19:20:27 +05:30
Arun Isaac 42d9c3b24a
gnu: Add go-lukechampine-com-blake3. 
* gnu/packages/golang.scm (go-lukechampine-com-blake3): New variable.
 2021-08-01 19:20:26 +05:30
Arun Isaac edaea8d2ac
gnu: Add go-github-com-dustin-go-humanize. 
* gnu/packages/golang.scm (go-github-com-dustin-go-humanize): New variable.
 2021-08-01 19:20:26 +05:30
Arun Isaac 344460bab4
gnu: Add go-github-com-davecgh-go-xdr. 
* gnu/packages/golang.scm (go-github-com-davecgh-go-xdr): New variable.
 2021-08-01 19:20:21 +05:30
Morgan Smith fcba63f8b7
gnu: Add emacs-autocrypt. 
* gnu/packages/emacs-xyz.scm (emacs-autocrypt): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-08-01 18:14:55 +05:30
Ricardo Wurmus 5ab679f4da
gnu: Add libpst. 
* gnu/packages/mail.scm (libpst): New variable.
 2021-08-01 14:23:08 +02:00
Nicolas Goaziou 42aee12103
gnu: scintilla: Update to 5.1.1. 
* gnu/packages/text-editors.scm (scintilla): Update to 5.1.1.
 2021-08-01 13:44:35 +02:00
Nicolas Goaziou 532000024f
gnu: emacs-evil-nerd-commenter: Update to 3.5.5. 
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.5.5.
 2021-08-01 13:23:14 +02:00
Nicolas Goaziou e916f9ab60
gnu: emacs-evil-matchit: Update to 2.3.13. 
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.13.
 2021-08-01 13:19:44 +02:00
Nicolas Goaziou 89d6664bab
gnu: emacs-evil-collection: Update to 0.0.6. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.6.
 2021-08-01 13:18:16 +02:00
Nicolas Goaziou 6e0eb82f21
gnu: emacs-perspective: Update to 2.16. 
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.16.
 2021-08-01 13:16:38 +02:00
Nicolas Goaziou dbbadb87b4
gnu: giac: Update to 1.7.0-23. 
* gnu/packages/algebra.scm (giac): Update to 1.7.0-23.
 2021-08-01 13:06:33 +02:00
Felix Gruber c8bcef2598
gnu: sameboy: Update to 0.14.4. 
* gnu/packages/emulators.scm (sameboy): Update to 0.14.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-08-01 12:58:03 +02:00
Leo Famulari b62e74e053
gnu: linux-libre 4.19: Update to 4.19.200. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.200.
(linux-libre-4.19-pristine-source): Update hash.
 2021-07-27 12:35:01 -04:00
Leo Famulari 2b26915552
gnu: linux-libre 5.4: Update to 5.4.137. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.137.
(linux-libre-5.4-pristine-source): Update hash.
 2021-07-27 12:35:01 -04:00
Leo Famulari 86f2e3bfdc
gnu: linux-libre 5.10: Update to 5.10.55. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.55.
(linux-libre-5.10-pristine-source): Update hash.
 2021-07-27 12:35:01 -04:00
Leo Famulari 15e484933f
gnu: linux-libre: Update to 5.13.7. 
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.7.
(linux-libre-5.13-pristine-source): Update hash.
 2021-07-27 12:34:57 -04:00
Julien Lepiller e38b4d5ceb
gnu: coq: Update to 8.13.2. 
* gnu/packages/coq.scm (coq): Update to 8.13.2.
(coq-ide-server, coq-ide): New packages.
(coq-gappa): Update to 1.4.6.
(coq-bignums): Update to 8.13.0.
(coq-interval): Update to 1.3.0.
(coq-equations): Update to 1.2.4.
 2021-07-31 23:06:16 +02:00
Julien Lepiller 3c44aa2b74
gnu: coq-stdpp: Update to 1.5.0. 
* gnu/packages/coq.scm (coq-stdpp): Update to 1.5.0.
 2021-07-31 23:06:14 +02:00
Julien Lepiller 3589c17556
gnu: lablgtk3: Install with version information. 
This is required so recent versions of coq can check version
requirements.

* gnu/packages/ocaml.scm (lablgtk3)[arguments]: Ensure version is added
to the META file.
 2021-07-31 23:06:12 +02:00
Julien Lepiller 96707d5a30
gnu: ocaml-zarith: Update to 1.12. 
* gnu/packages/ocaml.scm (ocaml-zarith): Update to 1.12.
 2021-07-31 23:05:59 +02:00
Pierre Neidhardt 7c6ace67bb
Revert "gnu: sbcl: Update to 2.1.7." 
This SBCL version seems to have a bug that breaks many packages.

This reverts commit b07581d6e2.
 2021-07-31 19:33:39 +02:00
Ricardo Wurmus 145e897530
gnu: Add sfizz. 
* gnu/packages/music.scm (sfizz): New variable.
 2021-07-31 18:40:57 +02:00
Xinglu Chen 94ece4f8f7
gnu: isync: Update to 1.4.3. 
* gnu/packages/mail.scm (isync): Update to 1.4.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-31 14:15:46 +02:00
Alexandr Vityazev 95b08b9137
gnu: emacs-vertico: Update to 0.13. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.13.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-31 14:04:19 +02:00
Pierre Langlois adb84ae8ea
gnu: u-boot-rockpro64-rk3399: Enable 'set-environment phase. 
Fixes <https://bugs.gnu.org/49550>.

* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]: Run
'set-environment phase after 'unpack instead of non-existent
'patch-rockpro64-config phase.
 2021-07-31 12:31:04 +01:00
Pierre Neidhardt b07581d6e2
gnu: sbcl: Update to 2.1.7. 
* gnu/packages/lisp.scm (sbcl): Update to 2.1.7.
 2021-07-31 13:23:13 +02:00
Pierre Neidhardt 7a3ef338db
gnu: sbcl-alexandria: Update to 1.4. 
* gnu/packages/lisp-xyz.scm (sbcl-alexandria): Update to 1.4.
 2021-07-31 13:23:03 +02:00
Nicolas Goaziou 8f6275fb49
gnu: emacs-ts: Update to 0.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-ts): Update to 0.2.1.
 2021-07-31 09:29:11 +02:00
Nicolas Goaziou a62d79e755
gnu: emacs-tramp: Update to 2.5.1.1. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.1.1.
 2021-07-31 09:25:59 +02:00
Philip McGrath db2c7e70ad
gnu: racket-minimal: Bootstrap from C. 
This commit bootstraps the Racket compiler and runtime system from source,
including Racket CS as well as both variants of Racket BC. (One remaining
limitation is discussed in comments added to gnu/packages/racket.scm.)

In the process, it moves to building minimal Racket from the Git repository,
rather than the packaged source tarballs. The Git repository is slightly
better as the ``corresponding source'':

 1. A few packages especially closely tied to the Racket core implementation
    (like "compiler-lib", "base", and "racket-doc") are developed in the
    same Git repository. Having them use the same Guix origin, too, will
    help to keep them in sync.

 2. The top-level Makefile in the Git repository is an important
    ``script[] used to control compilation and installation.''
    In particular, it cooperates with the "distro-build" package to
    create the source tarballs and installers for a Racket distribution.
    (Racket supports a notion of custom distributions.)

 3. It is ``the preferred form ... for making modifications'' to the core
    Racket implementation.

Racket releases are tagged in the Git repository (e.g. "v8.1"). At the
beginning of each release cycle, a branch is created to stabilizer a version
for extra testing. Active development happens on the "master" branch.

* gnu/packages/racket-minimal-sh-via-rktio.patch: Adjust for extra directory
layer.
* gnu/local/racket.scm (cfg-flag:sh-for-rktio, cfg-flag:enable-lt,
cfg-flag:enable-racket, unpack-nanopass+stex,
%main-repo-main-distribution-pkgs): New private variables.
* gnu/local/racket.scm (racket-minimal)[source]: Use Git.
[source](snippet): Unbundle nanopass, stex, and libffi.
[native-inputs]: Use racket-bootstrap-chez-bootfiles, plus its
dependencies (for Chez, plus a Racket for bootstrap pig).
[arguments]: Revise extensively.
* gnu/local/racket.scm (racket-minimal-bc-3m, racket-minimal-bc-cgc): New
packages, hidden at least for now.
(racket-bootstrap-chez-bootfiles): Another new package, but this one is
especially likely to stay hidden.
* gnu/local/racket.scm (racket)[origin](snippet): Unbundle packages
developed in the main Git repository, but leave their links.rktd and
pkgs.rktd entries in place.
[native-inputs]: Add the main Racket Git repository.
[arguments](#:phases): Adjust 'unpack-packages to also unpack package
sources from the main Racket Git repository.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:25 +02:00
Philip McGrath 65bad4d036
gnu: racket: Unbundle racket-minimal. 
This change takes advantage of improved support for layered
and tethered installations in Racket 8.2.

* gnu/packages/racket.scm (extend-layer): New private variable.
This is a script for configuring a new config-tethered layer
chaining to an existing Racket installation.
* gnu/packages/racket.scm (racket)[source](snippet): Unbundle
`racket-minimal`.
[inputs]: Remove inputs that properly belong to `racket-minimal`.
[native-inputs]: Add `racket-minimal` and `extend-layer`.
[arguments]: Stop inheriting from `racket-minimal`. Add phase
'unpack-packages to move the sources and links file into place.
Replace 'configure phase using `extend-layer`.
Replace 'build phase using `raco setup`.
Delete 'install phase.
* gnu/packages/patches/racket-sh-via-rktio.patch: Rename to ...
* gnu/packages/patches/racket-minimal-sh-via-rktio.patch: ... this
file to placate `guix lint`.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/racket.scm (racket-minimal)[source]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:25 +02:00
Philip McGrath 1ae95ebcdd
gnu: racket: Update to 8.2. 
* gnu/packages/racket.scm (racket-minimal, racket): Update to 8.2.
* gnu/packages/racket.scm (racket-minimal)[#:arguments]: Fix
patch-config.rktd-lib-search-dirs phase. When a config.rktd file
doesn't contain an entry for `lib-search-dirs`, the default is
equivalent to `'(#f)`, not `'()`.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
la snesne a07f39b7da
gnu: Add libmobi. 
* gnu/packages/ebook.scm (libmobi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
zimoun 0ca7435fe0
gnu: guile-dbd-sqlite3: Replace 'url-fetch' by 'git-fetch'. 
Fixes https://debbugs.gnu.org/25913.

* gnu/packages/guile-xyz.scm (guile-dbi)[source]: Replace 'url-fetch'
by'git-fetch'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
zimoun 82cfefc2a0
gnu: guile-dbi: Replace 'url-fetch' by 'git-fetch'. 
Fixes https://debbugs.gnu.org/25913.

* gnu/packages/guile-xyz.scm (guile-dbi)[source]: Replace 'url-fetch'
by'git-fetch'.
[home-page]: Update.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
Dhruvin Gandhi 0e9b77d8d0
gnu: python-yubikey-manager: Fix libykpers reference. 
* gnu/packages/security-token.scm (python-yubikey-manager): Fix libykpers reference.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
Ludovic Courtès 630c39d8df
gnu: onnx: Change source to 'git-fetch'. 
* gnu/packages/machine-learning.scm (onnx)[source]: Change to
'git-fetch'.  Add "onnx-skip-model-downloads.patch".
[arguments]: Add 'make-test-directory-writable' phase.
* gnu/packages/patches/onnx-skip-model-downloads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès fa2d94b5e3
gnu: python-onnx: Rename to "onnx". 
* gnu/packages/machine-learning.scm (python-onnx): Rename to...
(onnx): ... this, and change 'name' field accordingly.
(python-onnx): New variable.
* gnu/packages/patches/python-onnx-shared-libraries.patch: Rename to...
* gnu/packages/patches/onnx-shared-libraries.patch: ... this.
* gnu/packages/patches/python-onnx-use-system-googletest.patch: Rename
to...
* gnu/packages/patches/onnx-use-system-googletest.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès 2b55f914c3
gnu: python-onnx: Install libonnx.so and libonnx_proto.so. 
* gnu/packages/patches/python-onnx-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-onnx)[source]: Use it.
[arguments]: New field.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès bb5b6b09dc
gnu: python-onnx: Delete bundled software. 
* gnu/packages/machine-learning.scm (python-onnx)[source]: Delete
the 'third_party' directory.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès 3ac3ca367a
gnu: python-onnx: Move comment to the patch header. 
* gnu/packages/machine-learning.scm (python-onnx): Move patch comment to...
* gnu/packages/patches/python-onnx-use-system-googletest.patch: ... here.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès 5f9dc326d9
gnu: python-onnx: Update to 1.9.0. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.9.0.
 2021-07-31 01:03:23 +02:00
Ricardo Wurmus 721e380764
gnu: liquidsfz: Use fixed libsndfile. 
* gnu/packages/music.scm (liquidsfz)[inputs]: Replace libsndfile with
libsndfile/fixed.
 2021-07-30 22:34:45 +02:00
Ricardo Wurmus 4c013867b6
gnu: Add libsndfile/fixed. 
* gnu/packages/pulseaudio.scm (libsndfile/fixed): New variable.
 2021-07-30 22:34:45 +02:00
Efraim Flashner 7041abe38a
gnu: parallel: Update to 20210722. 
* gnu/packages/parallel.scm (parallel): Update to 20210722.
 2021-07-30 19:17:52 +03:00
Marius Bakke 730f11ba92
gnu: python-elasticsearch: Update to 7.13.4. 
* gnu/packages/python-web.scm (python-elasticsearch): Update to 7.13.4.
[native-inputs]: Remove.
[propagated-inputs]: Add PYTHON-CERTIFI.
 2021-07-30 16:18:41 +02:00
Leo Prikler 311cc4ee65
gnu: openttd-opensmx: Update to 0.4.0. 
* gnu/packages/games.scm (openttd-opensmx): Update to 0.4.0.
[native-inputs]: Add tar.
[#:make-flags]: Drop INSTALL_DIR.  Add DIR_NAME and TAR.
[#:tests?]: New argument.
[#:phases]: Replace ‘install’ with a simple copy operation and drop
post-install.
 2021-07-30 15:22:16 +02:00
Leo Prikler 0a1df50e9f
gnu: Fix OpenSFX build. 
OpenSFX 1.0.1 uses a different build system from the old one, which causes
weird errors.

* gnu/packages/games.scm (openttd-opensfx)[native-inputs]: Add tar.
[#:make-flags]: Drop INSTALL_DIR.  Add DIR_NAME and TAR.
[#:tests?]: New argument.
[#:phases]: Add ‘prebuild’.  Replace ‘install’ with a simple copy.
 2021-07-30 15:22:16 +02:00
Eric Bavier 9b41c08f41
gnu: Add C-Vise. 
* gnu/packages/debug.scm (c-vise): New variable.
 2021-07-30 08:13:44 -05:00
Eric Bavier f71b91a22b
gnu: Add python-pebble. 
* gnu/packages/python-xyz.scm (python-pebble): New variable.
 2021-07-30 08:13:38 -05:00
Leo Prikler 1484de9eff
gnu: Fix OpenSFX URI. 
In commit 1cdf1cd7fe, the URI was updated to the
wrong value and the hash not updated at all, so people would erroneously fetch
the old package from a wrong description.

* gnu/packages/games.scm (openttd-opensfx)[uri]: Use
<https://cdn.openttd.org/opensfx-releases>.
[sha256]: Update accordingly.
 2021-07-30 14:29:21 +02:00
Leo Prikler e638a9a1f7
gnu: openttd-opengfx: Update to 0.6.1. 
* gnu/packages/games.scm (openttd-opengfx): Update to 0.6.1.
 2021-07-30 10:01:31 +02:00
Ron Nazarov 1cdf1cd7fe
gnu: openttd-opensfx: Update to 1.0.1. 
* gnu/packages/games.scm (openttd-opensfx): Update to 1.0.1.
[source]: Use <https://cdn.openttd.org>.
[license]: Update to CC BY-SA 3.0.
 2021-07-30 10:00:42 +02:00
Nicolas Goaziou 9f48f71398
gnu: emacs-string-inflection: Update to 1.0.14. 
* gnu/packages/emacs-xyz.scm (emacs-string-inflection): Update to 1.0.14.
 2021-07-30 08:34:29 +02:00
Maxim Cournoyer daeef2e7f4
gnu: Add createrepo-c. 
* gnu/packages/rpm.scm (createrepo-c): New variable.
 2021-07-29 22:03:34 -04:00
Maxim Cournoyer 0413e90ab1
gnu: Add libmodulemd. 
* gnu/packages/rpm.scm (libmodulemd): New variable.
 2021-07-29 22:03:34 -04:00
Maxim Cournoyer 4613a9948a
gnu: Add drpm. 
* gnu/packages/rpm.scm: Add file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
 2021-07-29 22:03:34 -04:00
Maxim Cournoyer e81228166e
gnu: web: Move libyaml and libcyaml to (gnu packages serialization). 
Files to be adjusted were searched with the following command:

 $ git ls-files | xargs grep -l -E ',libc?yaml' | \
       xargs grep -L '(gnu packages serialization)'

* gnu/packages/web.scm (libyaml, libyaml+static, libcyaml): Move to...
* gnu/packages/serialization.scm: ... here.
 2021-07-29 22:03:33 -04:00
Maxim Cournoyer 84fa28234f
gnu: Add zchunk. 
* gnu/packages/compression.scm (zchunk): New variable.
 2021-07-29 22:03:33 -04:00
Jack Hill 00c55e856f
gnu: Add nginx-rtmp-module. 
* gnu/packages/web.scm (nginx-rtmp-module): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-29 21:54:55 +02:00
Ludovic Courtès b402a3ec86
gnu: Add XNNPACK. 
* gnu/packages/machine-learning.scm (xnnpack): New variable.
* gnu/packages/patches/xnnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès 1daa662722
gnu: Add FP16. 
* gnu/packages/patches/fp16-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (fp16): New variable.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès 065d45e8a1
gnu: Add Psimd. 
* gnu/packages/parallel.scm (psimd): New variable.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès 4c5ad82780
gnu: Add cpuinfo. 
* gnu/packages/parallel.scm (cpuinfo): New variable.
* gnu/packages/patches/cpuinfo-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès 646b5ad983
gnu: Add googlebenchmark. 
* gnu/packages/check.scm (googlebenchmark): New variable.
 2021-07-29 21:54:54 +02:00
Ludovic Courtès 18d04fef0f
gnu: Add pthreadpool. 
* gnu/packages/parallel.scm (pthreadpool): New variable.
* gnu/packages/patches/pthreadpool-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:54 +02:00
Ludovic Courtès a9bc8a25eb
gnu: Add FXDiv. 
* gnu/packages/maths.scm (fxdiv): New variable.
* gnu/packages/patches/fxdiv-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:54 +02:00
Ricardo Wurmus ffb381856d
gnu: r-xcms: Update to 3.14.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
 2021-07-29 20:20:18 +02:00
Ricardo Wurmus e06beb503c
gnu: r-reportingtools: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
 2021-07-29 20:20:15 +02:00
Tobias Geerinckx-Rice c022c1e5b2
gnu: php: Update to 7.4.22 [security fixes]. 
* gnu/packages/php.scm (php): Update to 7.4.22.
 2021-07-29 19:57:57 +02:00
Christopher Lemmer Webber 45235e67e4
system: Add (gnu system setuid). 
I flubbed and somehow when including the patch series, this got dropped.
Oops... should fix things again.

* gnu/system/setuid.scm: New file.
 2021-07-29 13:09:48 -04:00
Brice Waegeneire a85ec0bf69
services: Migrate to <setuid-program>. 
* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs):
  Return setuid-programs.
* gnu/services/desktop.scm (enlightenment-setuid-programs): Return
 setuid-programs.
 (%desktop-services)[mount-setuid-helpers]: Use setuid-programs.
* gnu/services/docker.scm (singularity-setuid-programs): Return
 setuid-programs.
* gnu/services/xorg.scm(screen-locker-setuid-programs): Return
 setuid-programs.
* gnu/system.scm (%setuid-programs): Return setuid-programs.
* doc/guix.texi (Setuid Programs, operating-system Reference): Replace
  'list of G-expressions' with 'list of <setuid-program>'.
 2021-07-29 11:32:48 -04:00
Chris Lemmer-Webber a7ac19851b
services: setuid: More configurable setuid support. 
New record <setuid-program> with fields for setting the specific user
and group, as well as specifically selecting the setuid and setgid bits,
for a program within the setuid-program-service.

* gnu/services.scm (setuid-program-file-like-deprecated): New function.
  (setuid-program-service-type): Make use of
  setuid-program->activation-gexp.  Adjust the extend property to handle
  <setuid-program>.
* gnu/build/activation.scm (activate-setuid-programs): Update to expect a
  <setuid-record> list for each program entry.
* gnu/system.scm: (operating-system-setuid-programs): Renamed to
  %operating-system-setuid-programs and replace it with new procedure.
  (operating-system-default-essential-services,
  hurd-default-essential-services): Replace
  operating-system-setuid-programs with
  %operating-system-setuid-programs.
* gnu/system/setuid.scm: New file.
* doc/guix.texi (Setuid Programs): Document <setuid-program>.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
 2021-07-29 11:32:08 -04:00
Ricardo Wurmus 5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 2c625a4969
gnu: r-e1071: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 234549dbfe
gnu: r-protolite: Update to 2.1.1. 
* gnu/packages/cran.scm (r-protolite): Update to 2.1.1.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus d9a5c8b7e3
gnu: r-lwgeom: Update to 0.2-7. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 03260ba1a4
gnu: r-mgsub: Update to 1.7.3. 
* gnu/packages/cran.scm (r-mgsub): Update to 1.7.3.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 1d2b6230da
gnu: r-matrixcalc: Update to 1.0-5. 
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-5.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus a648eaa915
gnu: r-leiden: Update to 0.3.9. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.9.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 4b322909d4
gnu: r-dalex: Update to 2.3.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.3.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus 75318afcdf
gnu: r-sf: Update to 1.0-2. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-2.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus d30f6cd6cc
gnu: r-summarytools: Update to 1.0.0. 
* gnu/packages/cran.scm (r-summarytools): Update to 1.0.0.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 1cc30d1eb6
gnu: r-ggeffects: Update to 1.1.1. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.1.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 07726b8575
gnu: r-pillar: Update to 1.6.2. 
* gnu/packages/cran.scm (r-pillar): Update to 1.6.2.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 5eac5eb748
gnu: r-vioplot: Update to 0.3.7. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.7.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 244fda54d3
gnu: r-stringdist: Update to 0.9.7. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.7.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus b1b605fddb
gnu: r-broom: Update to 0.7.9. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.9.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus fe6ad60e36
gnu: r-rpostgresql: Update to 0.7. 
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus 74abd1ebe9
gnu: r-arrow: Update to 5.0.0. 
* gnu/packages/cran.scm (r-arrow): Update to 5.0.0.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus ef61998524
gnu: apache-arrow: Update to 5.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
 2021-07-29 17:11:08 +02:00
Efraim Flashner b95fb85f59
gnu: vim-guix-vim: Update to 0.3.0. 
* gnu/packages/vim.scm (vim-guix-vim): Update to 0.3.0.
[source]: Update source uri.
 2021-07-29 14:46:41 +03:00
Efraim Flashner 4707ab2fc0
gnu: julia-weakrefstrings: Update to 1.1.0. 
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): Update to 1.1.0.
 2021-07-29 14:43:43 +03:00
Efraim Flashner 6bf32d1314
gnu: julia-typedtables: Update to 1.4.0. 
* gnu/packages/julia-xyz.scm (julia-typedtables): Update to 1.4.0.
 2021-07-29 14:43:43 +03:00
Efraim Flashner f5ec4cd9ac
gnu: julia-staticarrays: Update to 1.2.9. 
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.9.
 2021-07-29 14:43:43 +03:00
Efraim Flashner ace03e017c
gnu: julia-static: Update to 0.3.0. 
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.3.0.
 2021-07-29 14:43:43 +03:00
Efraim Flashner bf796e1b8e
gnu: julia-sortingalgorithms: Update to 1.0.1. 
* gnu/packages/julia-xyz.scm (julia-sortingalgorithms): Update to 1.0.1.
 2021-07-29 14:43:42 +03:00
Efraim Flashner b9264f2870
gnu: julia-simpletraits: Update to 0.9.4. 
* gnu/packages/julia-xyz.scm (julia-simpletraits): Update to 0.9.4.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 831ce9b94e
gnu: julia-recipespipeline: Update to 0.3.4. 
* gnu/packages/julia-xyz.scm (julia-recipespipeline): Update to 0.3.4.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 230d77d958
gnu: julia-plotutils: Update to 1.0.11. 
* gnu/packages/julia-xyz.scm (julia-plotutils): Update to 1.0.11.
 2021-07-29 14:43:42 +03:00
Efraim Flashner c2305209c2
gnu: julia-offsetarrays: Update to 1.10.3. 
* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.10.3.
 2021-07-29 14:43:42 +03:00
Efraim Flashner f70db25982
gnu: julia-mutablearithmetics: Update to 0.2.20. 
* gnu/packages/julia-xyz.scm (julia-mutablearithmetics): Update to 0.2.20.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 3127f3731a
gnu: julia-matrixfactorizations: Update to 0.8.4. 
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): Update to 0.8.4.
 2021-07-29 14:43:42 +03:00
Efraim Flashner 5f432ed5a7
gnu: julia-lazyarrays: Update to 0.21.11. 
* gnu/packages/julia-xyz.scm (julia-lazyarrays): Update to 0.21.11.
 2021-07-29 14:43:41 +03:00
Efraim Flashner 6087d0dbd6
gnu: julia-json3: Update to 1.9.0. 
* gnu/packages/julia-xyz.scm (julia-json3): Update to 1.9.0.
 2021-07-29 14:43:41 +03:00
Efraim Flashner 4a69ab16ec
gnu: julia-irtools: Update to 0.4.3. 
* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.3.
 2021-07-29 14:43:41 +03:00
Efraim Flashner fa86b01662
gnu: julia-imagecore: Update to 0.9.1. 
* gnu/packages/julia-xyz.scm (julia-imagecore): Update to 0.9.1.
 2021-07-29 14:43:41 +03:00
Efraim Flashner a9292ceeca
gnu: julia-http: Update to 0.9.12. 
* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.12.
 2021-07-29 14:43:41 +03:00
Efraim Flashner 92929c2288
gnu: julia-genericschur: Update to 0.5.1. 
* gnu/packages/julia-xyz.scm (julia-genericschur): Update to 0.5.1.
 2021-07-29 14:43:41 +03:00
Efraim Flashner f7d79b9671
gnu: julia-finitediff: Update to 2.8.1. 
* gnu/packages/julia-xyz.scm (julia-finitediff): Update to 2.8.1.
 2021-07-29 14:43:40 +03:00
Efraim Flashner ebd7ca3f4b
gnu: julia-fillarrays: Update to 0.12.1. 
* gnu/packages/julia-xyz.scm (julia-fillarrays): Update to 0.12.1.
 2021-07-29 14:43:40 +03:00
Efraim Flashner 231387c3bb
gnu: julia-exprtools: Update to 0.1.6. 
* gnu/packages/julia-xyz.scm (julia-exprtools): Update to 0.1.6.
 2021-07-29 14:43:40 +03:00
Efraim Flashner 23dbed6f76
gnu: julia-dictionaries: Update to 0.3.10. 
* gnu/packages/julia-xyz.scm (julia-dictionaries): Update to 0.3.10.
 2021-07-29 14:43:40 +03:00
Efraim Flashner e076ed6eee
gnu: julia-dataapi: Update to 1.7.0. 
* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.7.0.
 2021-07-29 14:43:40 +03:00
Efraim Flashner 57e5c907d9
gnu: julia-constructionbase: Update to 1.3.0. 
* gnu/packages/julia-xyz.scm (julia-constructionbase): Update to 1.3.0.
 2021-07-29 14:43:40 +03:00
Efraim Flashner 9cd7145bcd
gnu: julia-compat: Update to 3.32.0. 
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.32.0.
 2021-07-29 14:43:40 +03:00
Efraim Flashner ebe8aa846e
gnu: julia-colorschemes: Update to 3.13.0. 
* gnu/packages/julia-xyz.scm (julia-colorschemes): Update to 3.13.0.
 2021-07-29 14:43:39 +03:00
Efraim Flashner b5df917439
gnu: julia-blockbandedmatrices: Update to 0.10.7. 
* gnu/packages/julia-xyz.scm (julia-blockbandedmatrices): Update to 0.10.7.
 2021-07-29 14:43:39 +03:00
Efraim Flashner f0398a070b
gnu: julia-blockarrays: Update to 0.16.3. 
* gnu/packages/julia-xyz.scm (julia-blockarrays): Update to 0.16.3.
 2021-07-29 14:43:39 +03:00
Efraim Flashner ad8c40407c
gnu: julia-benchmarktools: Update to 1.1.1. 
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.1.1.
 2021-07-29 14:43:39 +03:00
Efraim Flashner 5d45f7b1d5
gnu: julia-bandedmatrices: Update to 0.16.10. 
* gnu/packages/julia-xyz.scm (julia-bandedmatrices): Update to 0.16.10.
 2021-07-29 14:43:39 +03:00
Efraim Flashner af3699492e
gnu: julia-axisarrays: Update to 0.4.4. 
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.4.
 2021-07-29 14:43:39 +03:00
Efraim Flashner 01546260b8
gnu: julia-arraylayouts: Update to 0.7.3. 
* gnu/packages/julia-xyz.scm (julia-arraylayouts): Update to 0.7.3.
 2021-07-29 14:43:38 +03:00
Efraim Flashner 7067111296
gnu: julia-arrayinterface: Update to 3.1.19. 
* gnu/packages/julia-xyz.scm (julia-arrayinterface): Update to 3.1.19.
 2021-07-29 14:43:38 +03:00
Efraim Flashner bfd92c357a
gnu: julia-interpolations: Update to 0.13.3. 
* gnu/packages/julia-xyz.scm (julia-interpolations): Update to 0.13.3.
[propagated-inputs]: Add julia-requires.
[native-inputs]: Add julia-zygote.
 2021-07-29 14:43:38 +03:00
Efraim Flashner f93a9835f3
gnu: julia-recursivearraytools: Update to 2.16.1. 
* gnu/packages/julia-xyz.scm (julia-recursivearraytools): Update to 2.16.1.
[propagated-inputs]: Add julia-chainrulescore.
 2021-07-29 14:43:38 +03:00
Efraim Flashner 6752fc153a
gnu: julia-imageinterminal: Udate to 0.4.7. 
* gnu/packages/julia-xyz.scm (julia-imageinterminal): Update to 0.4.7.
[propagated-inputs]: Add julia-imagebase, julia-requires. Remove
julia-imagetransformations.
 2021-07-29 14:43:38 +03:00
Efraim Flashner 0f15f77464
gnu: julia-ellipsisnotation: Adjust test suite for julia-1.6. 
* gnu/packages/julia-xyz.scm (julia-ellipsisnotation)[arguments]: Add
phase to skip outdated test.
 2021-07-29 14:43:38 +03:00
Efraim Flashner 8d787994e5
gnu: julia-zygote: Update to 0.6.17. 
* gnu/packages/julia-xyz.scm (julia-zygote): Update to 0.6.17.
 2021-07-29 14:43:38 +03:00
Efraim Flashner f6bc4657e1
gnu: julia-unitful: Update to 1.9.0. 
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.9.0.
 2021-07-29 14:43:37 +03:00
Efraim Flashner 9fe69d78d6
gnu: julia-tables: Update to 1.4.4. 
* gnu/packages/julia-xyz.scm (julia-tables): Update to 1.4.4.
 2021-07-29 14:43:37 +03:00
Efraim Flashner 2d25b2f9b7
gnu: julia-staticarrays: Update to 1.2.8. 
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.8.
 2021-07-29 14:43:37 +03:00
Efraim Flashner 071f036625
gnu: julia-finitedifferences: Update to 0.12.17. 
* gnu/packages/julia-xyz.scm (julia-finitedifferences): Update to 0.12.17.
 2021-07-29 14:43:37 +03:00
Efraim Flashner e477487e00
gnu: julia-chainrulestestutils: Update to 1.0.0. 
* gnu/packages/julia-xyz.scm (julia-chainrulestestutils): Update to 1.0.0.
 2021-07-29 14:43:37 +03:00
Efraim Flashner 038a7dd56b
gnu: julia-chainrulescore: Update to 1.0.2. 
* gnu/packages/julia-xyz.scm (julia-chainrulescore): Update to 1.0.2.
 2021-07-29 14:43:37 +03:00
Efraim Flashner 4a79a39b1c
gnu: julia-chainrules: Update to 1.1.0. 
* gnu/packages/julia-xyz.scm (julia-chainrules): Update to 1.1.0.
 2021-07-29 14:43:31 +03:00
Efraim Flashner 228763316a
gnu: julia-specialfunctions: Update to 1.6.0. 
* gnu/packages/julia-xyz.scm (julia-specialfunctions): Update to 1.6.0.
[propagated-inputs]: Add julia-logexpfunctions.
 2021-07-29 14:43:30 +03:00
Efraim Flashner 226af89e58
gnu: julia-fuzzycompletions: Adjust test suite for julia-1.6. 
* gnu/packages/julia-xyz.scm (julia-fuzzycompletions)[arguments]: Add
phase to skip failing test.
 2021-07-29 14:43:30 +03:00
Efraim Flashner d09223edab
gnu: julia-rotations: Update to 1.0.2-1.b599102. 
* gnu/packages/julia-xyz.scm (julia-rotations): Update to 1.0.2-1.b599102.
 2021-07-29 14:43:30 +03:00
Efraim Flashner 1cc36f5efe
gnu: julia-nnlib: Update to 0.7.25. 
* gnu/packages/julia-xyz.scm (julia-nnlib): Update to 0.7.25.
[arguments]: Skip tests.
 2021-07-29 14:43:30 +03:00
Efraim Flashner 7975a64b6d
gnu: julia-tracker: Patch for julia-1.6. 
* gnu/packages/julia-xyz.scm (julia-tracker)[source]: Add patch.
* gnu/packages/patches/julia-tracker-16-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2021-07-29 14:43:27 +03:00
Nicolas Goaziou 74dad2c75a
gnu: python-pikepdf: Update to 2.16.1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.1.
 2021-07-29 10:28:08 +02:00
Nicolas Goaziou 01cc360cf5
gnu: emacs-csharp-mode: Update to 0.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 0.12.0.
 2021-07-29 10:26:31 +02:00
Nicolas Goaziou 3ef3f791f9
gnu: emacs-nswbuff: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-nswbuff): Update to 1.3.
 2021-07-29 10:24:44 +02:00
Nicolas Goaziou e4e9037402
gnu: snap: Update to 6.9.0. 
* gnu/packages/education.scm (snap): Update to 6.9.0.
 2021-07-29 10:21:49 +02:00
Nicolas Goaziou 87b409d7e9
gnu: mame: Update to 0.234. 
* gnu/packages/emulators.scm (mame): Update to 0.234.
 2021-07-29 10:14:29 +02:00
Nicolas Goaziou 3a59d722c1
gnu: emacs-solaire-mode: Update to 2.0.2. 
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.2.
 2021-07-29 09:44:57 +02:00
Nicolas Goaziou 79a99af640
gnu: emacs-org-fragtog: Update to 0.3.3. 
* gnu/packages/emacs-xyz.scm (emacs-org-fragtog): Update to 0.3.3.
 2021-07-29 09:44:11 +02:00
Ron Nazarov via Guix-patches via 59dd6dfb91
gnu: Add emacs-nasm-mode. 
* gnu/packages/emacs-xyz.scm (emacs-nasm-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-07-29 09:40:08 +02:00
Leo Famulari 7af47b876a
gnu: linux-libre 4.4: Update to 4.4.277. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.277.
(linux-libre-4.4-pristine-source): Update hash.
 2021-07-28 17:18:04 -04:00
Leo Famulari 7c31c37676
gnu: linux-libre 4.9: Update to 4.9.277. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.277.
(linux-libre-4.9-pristine-source): Update hash.
 2021-07-28 17:18:04 -04:00
Leo Famulari f836b47eba
gnu: linux-libre 4.14: Update to 4.14.241. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.241.
(linux-libre-4.14-pristine-source): Update hash.
 2021-07-28 17:18:04 -04:00
Leo Famulari 278fc1e85d
gnu: linux-libre 4.19: Update to 4.19.199. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.199.
(linux-libre-4.19-pristine-source): Update hash.
 2021-07-28 17:18:03 -04:00
Leo Famulari 7400d3ebbe
gnu: linux-libre 5.4: Update to 5.4.136. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.136.
(linux-libre-5.4-pristine-source): Update hash.
 2021-07-28 17:18:03 -04:00
Leo Famulari a137816cc7
gnu: linux-libre 5.10: Update to 5.10.54. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.54.
(linux-libre-5.10-pristine-source): Update hash.
 2021-07-28 17:18:03 -04:00
Leo Famulari 4f108e4e5c
gnu: linux-libre: Update to 5.13.6. 
* gnu/packages/linux.scm (linux-libre-5.12-version, deblob-scripts-5.12
linux-libre-5.12-pristine-source, linux-libre-5.12-source,
linux-libre-headers-5.12, linux-libre-5.12): Remove variables.
(linux-libre-version, linux-libre-pristine-source, linux-libre-source,
linux-libre): Update to the 5.13 kernel series.
(linux-libre-with-bpf): Update to 5.13 kernel series.
* gnu/packages/aux-files/linux-libre/5.12-arm.conf,
gnu/packages/aux-files/linux-libre/5.12-arm64.conf,
gnu/packages/aux-files/linux-libre/5.12-i686.conf,
gnu/packages/aux-files/linux-libre/5.12-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
 2021-07-28 17:18:02 -04:00
Ricardo Wurmus a32241fcda
gnu: r-catalyst: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.2.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus 9d7eb480f8
gnu: r-mixomics: Update to 6.16.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.2.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus d0d3637c92
gnu: r-rsubread: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.4.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus 8d9626dd7d
gnu: r-annotatr: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.1.
 2021-07-28 22:26:56 +02:00
Ricardo Wurmus 73fa220b43
gnu: r-motifbreakr: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 336b110f69
gnu: r-scone: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus fd0851ee97
gnu: r-chippeakanno: Update to 3.26.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus acc62073be
gnu: r-ensembldb: Update to 2.16.3. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus e2ca38e611
gnu: r-ranger: Update to 0.13.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.13.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 8934c48d41
gnu: r-blob: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus a30bcf6600
gnu: r-rcpparmadillo: Update to 0.10.6.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.6.0.0.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 92c837f426
gnu: r-readr: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-readr): Update to 2.0.0.
[propagated-inputs]: Remove r-bh; add r-tzdb and r-vroom.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 8c7483196a
gnu: r-tibble: Update to 3.1.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus ee2bae9385
gnu: r-pryr: Update to 0.1.5. 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.5.
[propagated-inputs]: Add r-lobstr and r-rcpp.
[native-inputs]: Remove r-rcpp.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 5fb96b16a4
gnu: r-stringi: Update to 1.7.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus b33be7b772
gnu: r-vroom: Update to 1.5.3. 
* gnu/packages/cran.scm (r-vroom): Update to 1.5.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 7f244ccacb
gnu: r-tzdb: Update to 0.1.2. 
* gnu/packages/cran.scm (r-tzdb): Update to 0.1.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 42085a60bf
gnu: r-readtext: Update to 0.81. 
* gnu/packages/cran.scm (r-readtext): Update to 0.81.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus 36e993e302
gnu: r-mlr3misc: Update to 0.9.3. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.3.
[propagated-inputs]: Add r-digest.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 0f5b85ba51
gnu: r-lpme: Update to 1.1.2. 
* gnu/packages/cran.scm (r-lpme): Update to 1.1.2.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 6833c0086c
gnu: r-phangorn: Update to 2.7.1. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.7.1.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 1b06cf529a
gnu: r-modeldata: Update to 0.1.1. 
* gnu/packages/cran.scm (r-modeldata): Update to 0.1.1.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 5fe6129c66
gnu: r-parsnip: Update to 0.1.7. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.7.
[propagated-inputs]: Add r-hardhat.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 5ceaaeca08
gnu: r-workflowsets: Update to 0.1.0. 
* gnu/packages/cran.scm (r-workflowsets): Update to 0.1.0.
[propagated-inputs]: Add r-hardhat and r-lifecycle.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus ff971f4add
gnu: r-tune: Update to 0.1.6. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.6.
[propagated-inputs]: Add r-hardhat, r-lifecycle, and r-withr.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 260d29bf76
gnu: r-workflows: Update to 0.2.3. 
* gnu/packages/cran.scm (r-workflows): Update to 0.2.3.
[propagated-inputs]: Add r-lifecycle.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus 5fa0448590
gnu: r-spatstat-linnet: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.3-0.
[propagated-inputs]: Add r-spatstat-sparse.
 2021-07-28 22:26:54 +02:00
Ricardo Wurmus d3b8b6703c
gnu: r-spatstat-core: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.3-0.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus 9a5901e0ad
gnu: r-spatstat-geom: Update to 2.2-2. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-2.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus 7b41c93061
gnu: r-hardhat: Update to 0.1.6. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.6.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus 35f9a754d8
gnu: r-isoband: Update to 0.2.5. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.5.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus 49979bf735
gnu: r-seewave: Update to 2.1.8. 
* gnu/packages/cran.scm (r-seewave): Update to 2.1.8.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus 03e4676138
gnu: r-showtext: Update to 0.9-3. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9-3.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus 73871946a1
gnu: r-sysfonts: Update to 0.8.4. 
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.4.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus c1919dacf4
gnu: r-styler: Update to 1.5.1. 
* gnu/packages/cran.scm (r-styler): Update to 1.5.1.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus b21351870a
gnu: r-rttf2pt1: Update to 1.3.9. 
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.9.
 2021-07-28 22:26:53 +02:00
Ricardo Wurmus d5e5809b94
gnu: r-adegenet: Update to 2.1.4. 
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.4.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus c84a2c1209
gnu: r-wk: Update to 0.5.0. 
* gnu/packages/cran.scm (r-wk): Update to 0.5.0.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus d57de3da9c
gnu: r-compositions: Update to 2.0-2. 
* gnu/packages/cran.scm (r-compositions): Update to 2.0-2.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus f04f40880c
gnu: r-parallelly: Update to 1.27.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.27.0.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus a6044a7573
gnu: r-rgl: Update to 0.107.10. 
* gnu/packages/cran.scm (r-rgl): Update to 0.107.10.
[propagated-inputs]: Remove r-manipulatewidget and r-shiny.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus c210531551
gnu: r-afex: Update to 1.0-1. 
* gnu/packages/cran.scm (r-afex): Update to 1.0-1.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus 40648a1e20
gnu: r-credentials: Update to 1.3.1. 
* gnu/packages/cran.scm (r-credentials): Update to 1.3.1.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus 9e56bb33d5
gnu: r-sjplot: Update to 2.8.9. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.9.
[propagated-inputs]: Add r-datawizard.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus ce8738a194
gnu: r-performance: Update to 0.7.3. 
* gnu/packages/cran.scm (r-performance): Update to 0.7.3.
[propagated-inputs]: Add r-datawizard.
 2021-07-28 22:26:52 +02:00
Ricardo Wurmus 7a8081f23e
gnu: r-bayestestr: Update to 0.10.5. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.5.
[propagated-inputs]: Add r-datawizard.
 2021-07-28 22:26:51 +02:00
Ricardo Wurmus 4590f8b338
gnu: r-glmmtmb: Update to 1.1.2. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.2.
 2021-07-28 22:26:51 +02:00
Ricardo Wurmus 0af4e95b33
gnu: r-survey: Update to 4.1-1. 
* gnu/packages/cran.scm (r-survey): Update to 4.1-1.
 2021-07-28 22:26:51 +02:00
Ricardo Wurmus dce011239f
gnu: r-doby: Update to 4.6.11. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.11.
 2021-07-28 22:26:23 +02:00
Ricardo Wurmus c633e5f40a
gnu: r-flextable: Update to 0.6.7. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.7.
 2021-07-28 22:26:23 +02:00