e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
63f934e672
gnu: r-backports: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
c832d326a1
gnu: r-formula: Update to 1.2-2.
...
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
f05c6275b7
gnu: r-r6: Update to 2.2.2.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
b07c8c0156
gnu: r-knitr: Update to 1.16.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
12cd797541
gnu: r-evaluate: Update to 0.10.1.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
d5ce380711
gnu: r-dbi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
831858a7d3
gnu: r-bit64: Update to 0.9-7.
...
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
74b037df64
gnu: r-foreign: Update to 0.8-69.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
af1eeabe89
gnu: r-boot: Update to 1.3-20.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
c628b8418a
gnu: r-ranger: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
f9b3760636
gnu: r-plotly: Update to 4.7.1.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
d59050823e
gnu: r-igraph: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
aad948a0ea
gnu: r-tibble: Update to 1.3.3.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
2f06dc0435
gnu: Add r-rlang.
...
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
...
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
...
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
...
* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference
in the tarball is the metadata. The contents are identical.
2017-08-01 23:07:58 +02:00
cdf124c607
gnu: r-foreign: Remove duplicate recipe.
...
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
2017-07-27 10:04:09 +02:00
056468dc5f
gnu: Add cran module.
...
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
2017-07-22 23:48:57 +02:00
fcf4003950
gnu: r-spams: Update to 2.6-2017-03-22.
...
* gnu/packages/statistics.scm (r-spams): Update to 2.6-2017-03-22.
[arguments]: Remove R-3.3 work-around and syntax fixes, add phase to
prevent tuning r-spams to the compiling hardware.
2017-06-29 10:02:58 +03:00
148585c240
gnu: Move contents of zip module into compression module.
...
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to...
* gnu/packages/compression.scm: ...here.
* gnu/packages/zip.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file.
* po/packages/POTFILES.in: Unregister deleted file.
* gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression,
docbook, documentation, fonts, fpga, game-development, games, gl, gnome,
gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice,
markup, maths, mc, monitoring, music, php, pretty-print, python, scheme,
smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml,
zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm:
Adapt module import.
2017-06-20 18:10:35 +05:30
26bbdabdaa
gnu: r-devtools: Update to 1.13.2.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.2.
2017-06-17 20:53:22 +02:00
1dacc26956
gnu: Add r-fdrtool.
...
* gnu/packages/statistics.scm (r-fdrtool): New variable.
2017-06-09 03:28:40 +02:00
db0bb6f0af
gnu: Add r-lubridate.
...
* gnu/packages/statistics.scm (r-lubridate): New variable.
2017-06-09 03:27:49 +02:00
4646a79c65
gnu: r-preprocesscore: Update to 1.38.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
2017-04-28 11:05:43 +02:00
a71d769d1e
gnu: r-minimal: Update to 3.4.0.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.0.
[arguments]: Set timezone to UTC+1 in "set-timezone" phase to avoid regression
test failure.
2017-04-23 22:48:19 +02:00
3b74b7a283
gnu: r-caret: Update to 6.0-76.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-76.
[propagated-inputs]: Add r-lattice and r-nlme.
2017-04-22 23:30:38 +02:00
96071a6db2
gnu: r-lme4: Update to 1.1-13.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-13.
[propagated-inputs]: Add r-lattice and r-matrix.
2017-04-22 23:30:38 +02:00
0d5bc9382a
gnu: r-quantreg: Update to 5.33.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
2017-04-22 23:30:38 +02:00
f1a313dfde
gnu: r-compquadform: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
2017-04-22 23:30:38 +02:00
50d0b2c158
gnu: r-zoo: Update to 1.8-0.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
2017-04-22 23:30:37 +02:00
1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
2017-04-22 23:30:37 +02:00
c9d200e3af
gnu: r-r-rsp: Update to 0.41.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
2017-04-22 23:30:37 +02:00
96338a91d5
gnu: r-rtsne: Update to 0.13.
...
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
2017-04-22 23:30:37 +02:00
78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
2017-04-22 23:30:37 +02:00
050d41ca87
gnu: r-memoise: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
2017-04-22 23:30:36 +02:00
aa745eb61f
gnu: r-markdown: Update to 0.8.
...
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
2017-04-22 23:30:36 +02:00
958d0ee485
gnu: r-assertthat: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
2017-04-22 23:30:36 +02:00
2219e691bb
gnu: r-rpart: Update to 4.1-11.
...
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
2017-04-22 23:30:36 +02:00
b3360e09a7
gnu: r-mass: Update to 7.3-47.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
2017-04-22 23:30:35 +02:00
4d76947e50
gnu: r-boot: Update to 1.3-19.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
2017-04-22 23:30:35 +02:00
1c8ee3fcc2
gnu: r-stringi: Update to 1.1.5.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.5.
2017-04-08 10:25:50 +02:00
c9dccf7917
gnu: r-sourcetools: Update to 0.1.6.
...
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
2017-04-06 14:39:23 +02:00
0685fe3c86
gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
2017-04-06 14:39:22 +02:00
20e97759bf
gnu: r-ranger: Update to 0.7.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
2017-04-06 14:39:19 +02:00
da2260f96c
gnu: r-pbkrtest: Update to 0.4-7.
...
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
2017-04-06 14:39:19 +02:00
4328bad2cd
gnu: r-rcppeigen: Update to 0.3.2.9.1.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
2017-04-06 14:39:19 +02:00
a977576780
gnu: r-mclust: Update to 5.2.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
2017-04-06 14:39:18 +02:00
0007e645d9
gnu: r-ggthemes: Update to 3.4.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
2017-04-06 14:39:18 +02:00
47f37fd169
gnu: r-statmod: Update to 1.4.29.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
2017-04-06 14:39:18 +02:00
4c7ab0309a
gnu: r-vipor: Update to 0.4.5.
...
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
2017-04-06 14:39:18 +02:00
2f44ef97a5
gnu: r-mixtools: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
2017-04-06 14:39:17 +02:00
7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
82b281fe12
gnu: r-e1071: Update to 1.6-8.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
1d1fbb7336
gnu: r-sparsem: Update to 1.76.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
0def707ad8
gnu: r-rmarkdown: Update to 1.4.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
ac5e810205
gnu: r-bbmisc: Update to 1.11.
...
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
f1870aef99
gnu: r-backports: Update to 1.0.5.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
c6e40db528
gnu: r-ade4: Update to 1.7-6.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
9e8fac0c45
gnu: r-chron: Update to 2.3-50.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
7267f358a0
gnu: r-stringr: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
5beda28f6b
gnu: r-stringi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
9948b8e24c
gnu: r-digest: Update to 0.6.12.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
344e4741a1
gnu: r-survival: Update to 2.41-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
...
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
84157bb8bf
Merge branch 'master' into core-updates
...
Most conflicts are from 6fd52309b8
2017-03-30 22:59:53 +02:00
6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.
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All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-30 01:30:16 +02:00
378de69c59
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-22 12:57:37 +02:00
e2c4fe7c62
gnu: Add r-cairo.
...
* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
f67337e23e
Merge branch 'master' into core-updates
2017-03-19 18:52:12 -04:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-13 23:08:49 +02:00
3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
...
The package tarball was updated in place, resulting in a change in the hash
value. We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
3ffaec136f
gnu: Add a tzdata variant for testing purposes.
...
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-03-12 20:45:46 -04:00
a5935d1946
gnu: Add r-tsne.
...
* gnu/packages/bioinformatics.scm (r-tsne): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
02eec38ee1
gnu: Add r-ranger.
...
* gnu/packages/statistics.scm (r-ranger): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
d1906e3147
gnu: Add r-tclust.
...
* gnu/packages/statistics.scm (r-tclust): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
5a200a24eb
gnu: Add r-sn.
...
* gnu/packages/statistics.scm (r-sn): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
06085b5bc5
gnu: Add r-numderiv.
...
* gnu/packages/statistics.scm (r-numderiv): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
fe68c8a990
gnu: Add r-mnormt.
...
* gnu/packages/statistics.scm (r-mnormt): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
362ea0dc29
gnu: Add r-rcppprogress.
...
* gnu/packages/statistics.scm (r-rcppprogress): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa890f6185
gnu: Add r-caret.
...
* gnu/packages/statistics.scm (r-caret): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
ab2ec643c3
gnu: Add r-car.
...
* gnu/packages/statistics.scm (r-car): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
a3eb8c8191
gnu: Add r-pbkrtest.
...
* gnu/packages/statistics.scm (r-pbkrtest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
51fc7d8c31
gnu: Add r-lme4.
...
* gnu/packages/statistics.scm (r-lme4): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
Ricardo Wurmus
Roel Janssen
Efraim Flashner
Arun Isaac
Ricardo Wurmus
Leo Famulari
Marius Bakke
Tobias Geerinckx-Rice
Mark H Weaver
pjotrp
Raoul Jean Pierre Bonnal