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Author SHA1 Message Date
Maxime Devos 736bda211b
gnu: go-ipfs: Unbundle many dependencies. 
Tested with "./pre-inst-env guix build go-ipfs" and "make check-system
TESTS=ipfs".

go-github-com-blang-semver is currently out-of-date, so it cannot be unbundled
yet (at least, the build process seems to complain about the version).

* gnu/packages/ipfs.scm (go-ipfs)[source]: Add snippet removing many
bundled dependencies.
[inputs]: Add many inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-09-24 17:59:05 +02:00
M 1cf39c41cf
gnu: Add rot8. 
* gnu/packages/rust-apps.scm (rot8): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-09-24 17:59:05 +02:00
M 870422a15e
gnu: Add batsignal. 
* gnu/packages/monitoring.scm (batsignal): New variable.

Co-authored-by: ( <paren@disroot.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-09-24 17:59:05 +02:00
Wiktor Żelazny 9b4d2147c7
gnu: Add texlive-latex-sidecap. 
* gnu/packages/tex.scm (texlive-latex-sidecap): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-09-24 17:59:05 +02:00
Wiktor Żelazny beec17a724
gnu: Add texlive-latex-frankenstein. 
* gnu/packages/tex.scm (texlive-latex-frankenstein): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-09-24 17:59:05 +02:00
Ludovic Courtès 00d5bb5d7f
linux-container: Mark socket pair as SOCK_CLOEXEC. 
* gnu/build/linux-container.scm (run-container): Pass SOCK_CLOEXEC to
'socketpair'.
 2022-09-24 17:59:04 +02:00
Mathieu Othacehe 20fbc0bb08
gnu: openvswitch: Disable tests. 
On berlin the following test fails:

;; 25. bfd.at:268: 25. bfd - bfd decay (bfd.at:268): FAILED (bfd.at:397)

while this one fails on hydra-114:

1040. dpif-netdev - meters (dpif-netdev.at:269): FAILED (dpif-netdev.at:376)

Disable the tests for now.

* gnu/packages/networking.scm (openvswitch)[arguments]: Disable them.
 2022-09-24 15:11:35 +02:00
Alex Griffin c8112f3bd9
system: images: Add wsl2 module. 
* gnu/system/images/wsl2.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi ("System Images"): Document it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-24 14:49:09 +02:00
Alex Griffin 233cf9f036
system: image: Add wsl2 support. 
* gnu/image.scm (<image>)[format]: Add wsl2 support.
* gnu/system/image.scm (wsl2-image, wsl2-image-type): New variables.
(image->root-file-system): Add wsl2 image support.
(system-image): Ditto.
 2022-09-24 14:49:09 +02:00
Alex Griffin 8757c3f293
system: image: Add tarball support. 
* gnu/image.scm (<image>)[fields]: Add tarball to the supported formats.
* gnu/system/image.scm (tarball-image, tarball-image-type): New variables.
(system-tarball-image): New procedure.
(image->root-file-system): Add tarball image support.
(system-image): Ditto.
* doc/guix.texi ("System Images"): Document it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-24 14:49:09 +02:00
Mathieu Othacehe ebe9d660a5
gnu: Add compression module. 
Move the compression record to a dedicated module so that it can be used
outside (guix scripts pack) module.

* guix/scripts/pack.scm (<compressor>, %compressors, lookup-compressor): Move
it to ...
* gnu/compression.scm: ... this new file.
* gnu/ci.scm: Adapt it.
* local.mk (GNU_SYSTEM_MODULES): Add it.
 2022-09-24 14:49:09 +02:00
Mathieu Othacehe 08a7eb187f
platforms: x86: Rename Hurd hurd to i586-gnu. 
* guix/platforms/x86.scm (hurd): Rename it to ...
(i586-gnu): ... this variable.
* gnu/system/images/hurd.scm (hurd-disk-image, hurd-barebones-disk-image,
hurd-barebones-qcow2-image): Adapt those.
 2022-09-24 14:49:07 +02:00
Mathieu Othacehe c009c286a2
image: Make the operating-system field mandatory. 
Make the operating-system field mandatory as creating an image without it
makes no sense. Introduce a new macro, image-without-os for the specific cases
where the image is only created to be inherited from afterwards.

* gnu/image.scm (<image>)[operating-system]: Make it mandatory.
* gnu/system/image.scm (image-without-os): New macro.
(efi-disk-image, efi32-disk-image, iso9660-image, docker-image,
raw-with-offset-disk-image): Use it.
* gnu/system/images/hurd.scm (hurd-disk-image): Ditto.
 2022-09-24 14:20:36 +02:00
Mathieu Othacehe f38e91a84c
installer: tests: Fix typo. 
* gnu/installer/tests.scm (edit-configuration-file): Fix it.
 2022-09-24 14:15:47 +02:00
Lars-Dominik Braun dc7191302e
Revert "gnu: samba: Add avahi to inputs." 
This reverts commit 4cbc162296.

samba/fixed inherits from samba, which causes ~9000 rebuilds.
 2022-09-24 13:15:42 +02:00
Mathieu Othacehe fe4663ae24
installer: Fix configuration edition during testing. 
When the configuration is edited, it looks like there are some leftover
fragments from the input configuration:

Example content of config.scm after edition:

  #:imported-modules
  '((gnu services herd)
    (guix build utils)
    (guix combinators)))

unted".  The unique
  ;; file system identifiers there ("UUIDs") can be obtained
  ;; by running 'blkid' in a terminal.

...

This is strange because call-with-output-file uses the O_TRUNC flag which
resets the file size to zero. Remove the configuration file before writing it
as a work-around.

* gnu/installer/tests.scm (edit-configuration-file): Remove the configuration
file before re-writing it.
 2022-09-24 12:48:16 +02:00
Simon Streit e1ce100915
services: Add wsdd service. 
* doc/guix.texi: Add documentation for wsdd service.
* gnu/services/samba.scm (<wsdd-configuration>): New record.
(wsdd-service-type): New variable.
(wsdd-shepherd-services): New procedure.
* gnu/tests/samba.scm (%wsdd-os): Add variable.
(run-wsdd-test): New procedure.
(%test-wsdd): New variable.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-09-24 09:41:24 +02:00
Simon Streit 14359befa9
gnu: Add wsdd. 
* gnu/packages/samba.scm (wsdd): New variable.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-09-24 09:41:24 +02:00
Simon Streit d68721c55a
services: Add samba service. 
* gnu/services/samba.scm: New file.
* gnu/tests/samba.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add them.
* po/guix/POTFILES.in Add 'gnu/services/samba.scm'.
* doc/guix.texi: Document it.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-09-24 09:38:57 +02:00
Simon Streit 4cbc162296
gnu: samba: Add avahi to inputs. 
* gnu/packages/samba.scm (samba) <inputs>: Add avahi.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-09-24 09:38:57 +02:00
Liliana Marie Prikler a5c876cdb2
gnu: emacs-jsonrpc: Correct URL. 
* gnu/packages/emacs-xyz.scm (emacs-jsonrpc)[source]<url>: Drop trailing slash.
 2022-09-24 06:53:37 +02:00
Fredrik Salomonsson ff643b077c
gnu: emacs-jsonrpc: Correct hash. 
* gnu/packages/emacs-xyz.scm (emacs-jsonrpc)[source]: Correct hash.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 06:50:04 +02:00
Maxim Cournoyer 35e8615d38
Revert "tests: telephony: Add extra packages to %jami-os for debugging." 
This reverts commit 829c19142e, as it broke
'guix pull'.
 2022-09-24 00:22:19 -04:00
Maxim Cournoyer fd109c5c09
tests: jami-provisioning: Fix test derivation name. 
* gnu/tests/telephony.scm (run-jami-test): Fix test derivation name.
 2022-09-23 23:56:16 -04:00
Maxim Cournoyer effdc6c83e
services: jami-service-type: Streamline stop slot. 
* gnu/services/telephony.scm (jami-shepherd-services)
[stop]: Use make-kill-destructor with SIGKILL.  Add comment.
 2022-09-23 23:56:16 -04:00
Maxim Cournoyer 829c19142e
tests: telephony: Add extra packages to %jami-os for debugging. 
* gnu/tests/telephony.scm (make-jami-os): Add libjami:debug, gdb, guile,
guile-ac-d-bus, guile-readline, guile-fibers, screen and strace.
(run-jami-test)<jami service actions, ban/unban contacts>: Add (ice-9 match),
for lambda-match (worked without it but needed when manually testing).
 2022-09-23 23:56:15 -04:00
Maxim Cournoyer 21afbf54cd
build: jami-service: account->username always return a fingerprint. 
This change is motivated by the fact that Account.registeredName is a volatile
account data, not exported along the account and retrieved from the name
server.  Have it always return Account.username instead, so that the result is
reproducible independent of whether networking is available or not.

* gnu/build/jami-service.scm (account->username): Always return the account
fingerprint.  Adjust doc.
(id->username): Likewise.
 2022-09-23 23:56:15 -04:00
Maxim Cournoyer c50231cfcb
gnu: ffmpeg-jami: Update to 5.0.1 and enable tests. 
* gnu/packages/jami.scm (ffmpeg-jami): Update to 5.0.1.
[tests?]: Delete argument.
[phases]{disable-problematic-tests}: New phase.
 2022-09-23 23:56:15 -04:00
Maxim Cournoyer c8ab64b2df
gnu: pjproject-jami: Update to 2.12-0.5e478bb. 
* gnu/packages/jami.scm (pjproject-jami): Update to 2.12-0.5e478bb.
 2022-09-23 23:56:15 -04:00
Maxim Cournoyer 84369105d4
gnu: jami: Update to 20220825.0828.c10f01f. 
* gnu/packages/jami.scm (jami): Update to 20220825.0828.c10f01f.
(%jami-version): Set to latest release.
(%jami-sources): Remove jami-fix-esc-bug.patch; add
jami-fix-crash-on-block-contact.patch.
* gnu/packages/patches/jami-fix-esc-bug.patch: Delete file.
* gnu/packages/patches/jami-fix-crash-on-block-contact.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2022-09-23 23:56:15 -04:00
Maxim Cournoyer 503cfd5421
gnu: pjproject: Update to 2.12.1. 
* gnu/packages/telephony.scm (pjproject): Update to 2.12.1.
[source]: Delete patches field.
[arguments]: Use gexps.
* gnu/packages/patches/pjproject-install-libpjsua2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
 2022-09-23 23:56:14 -04:00
Nicolas Graves dab3800691
gnu: Add emacs-org-babel-eval-in-repl. 
* gnu/packages/emacs-xyz.scm (emacs-org-babel-eval-in-repl): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 01:49:55 +02:00
Nicolas Graves 7b1d02247b
gnu: Add emacs-ob-elm. 
* gnu/packages/emacs-xyz.scm (emacs-ob-elm): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 01:49:54 +02:00
Nicolas Graves 0b120ad5f8
gnu: Add emacs-eval-in-repl packages. 
* gnu/packages/emacs-xyz.scm (make-emacs-eval-in-repl)
(emacs-eval-in-repl-cider, emacs-eval-in-repl-elm, emacs-eval-in-repl-erlang)
(emacs-eval-in-repl-geiser, emacs-eval-in-repl-hy, emacs-eval-in-repl-ielm)
(emacs-eval-in-repl-iex, emacs-eval-in-repl-javascript)
(emacs-eval-in-repl-lua, emacs-eval-in-repl-ocaml, emacs-eval-in-repl-prolog)
(emacs-eval-in-repl-python, emacs-eval-in-repl-racket)
(emacs-eval-in-repl-shell, emacs-eval-in-repl-slime, emacs-eval-in-repl-sly)
(emacs-eval-in-repl-sml): New variables.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 01:46:34 +02:00
Nicolas Graves 7a4465473e
gnu: Add emacs-alchemist. 
* gnu/packages/emacs-xyz.scm (emacs-alchemist): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 01:46:34 +02:00
Nicolas Graves 10420af4b1
gnu: Add emacs-js-comint. 
* gnu/packages/emacs-xyz.scm (emacs-js-comint): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 01:46:34 +02:00
Nicolas Graves 63ba25cf67
gnu: Add emacs-eval-in-repl. 
* gnu/packages/emacs-xyz.scm (emacs-eval-in-repl): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-24 01:16:55 +02:00
Fredrik Salomonsson 08d5152332
gnu: emacs-jsonrpc: Use upstream source. 
* gnu/packages/emacs-xyz.scm (emacs-jsonrpc)[version]: Use git-version.
[source]: Use Emacs' git repository.
[arguments]: Replace ‘unpack’ phase to only unpack jsonrpc.el.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-23 18:18:29 +02:00
Maxim Cournoyer 46fee48d5c
services: configuration: Fix typo. 
* gnu/services/configuration.scm (interpose): Fix typo in doc.
(text-config?): Add a newline following definition.
 2022-09-23 00:50:12 -04:00
Ricardo Wurmus cbe8391d7c
gnu: Add mudskipper. 
* gnu/packages/bioinformatics.scm (mudskipper): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus 2eb7061aa2
gnu: Add rust-libradicl-0.4. 
* gnu/packages/crates-io.scm (rust-libradicl-0.4): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus dbf54f43c4
gnu: Add rust-rust-htslib-0.38. 
* gnu/packages/crates-io.scm (rust-rust-htslib-0.38): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus 3a3eb0b155
gnu: Add rust-hts-sys-2. 
* gnu/packages/crates-io.scm (rust-hts-sys-2): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus 9365a18385
gnu: Add rust-needletail-0.4. 
* gnu/packages/crates-io.scm (rust-needletail-0.4): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus 090fa61951
gnu: Add rust-sce-0.1. 
* gnu/packages/crates-io.scm (rust-sce-0.1): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus 93e23c6b26
gnu: Add rust-coitrees-0.2. 
* gnu/packages/crates-io.scm (rust-coitrees-0.2): New variable.
 2022-09-23 00:21:40 +02:00
Ricardo Wurmus 4e38e11a0b
gnu: Add rust-executors-0.9. 
* gnu/packages/crates-io.scm (rust-executors-0.9): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 4ded080b51
gnu: rust-obj-0.10: Disable tests. 
* gnu/packages/crates-io.scm (rust-obj-0.10)[arguments]: Disable tests.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 309b013c41
gnu: rust-glium-0.31: Add missing development inputs. 
* gnu/packages/crates-io.scm (rust-glium-0.31)[arguments]: Add rust-cgmath,
rust-genmesh, rust-obj, and rust-ouroboros.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 4ce25a6158
gnu: Add rust-obj-0.10. 
* gnu/packages/crates-io.scm (rust-obj-0.10): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 646686f66c
gnu: rust-winit-0.24: Add missing development inputs. 
* gnu/packages/crates-graphics.scm (rust-winit-0.24)[arguments]: Add
rust-console-log and rust-simple-logger to cargo-development-inputs.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus ecac40cf32
gnu: rust-winit: Add missing development inputs. 
* gnu/packages/crates-graphics.scm (rust-winit)[arguments]: Add
rust-console-log and rust-simple-logger to cargo-development-inputs.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 4b01a19a52
gnu: Add rust-console-log-0.2. 
* gnu/packages/crates-io.scm (rust-console-log-0.2): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 78c318636e
gnu: rust-mint-0.5: Update to 0.5.9. 
* gnu/packages/crates-io.scm (rust-mint-0.5): Update to 0.5.9.
[arguments]: Add rust-serde-1 to cargo-inputs; add rust-serde-json-1 to
cargo-development-inputs.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 4b9ea794a7
gnu: Add rust-indicatif-0.16. 
* gnu/packages/crates-io.scm (rust-indicatif-0.16): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 246c79e6a9
gnu: Add rust-synchronoise-1. 
* gnu/packages/crates-io.scm (rust-synchronoise-1): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus a6fde04785
gnu: Add rust-rustls-ffi-0.8. 
* gnu/packages/crates-io.scm (rust-rustls-ffi-0.8): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus f3f1a903ad
gnu: Add rust-quickersort-3. 
* gnu/packages/crates-io.scm (rust-quickersort-3): New variable.
 2022-09-23 00:21:39 +02:00
Ricardo Wurmus 01cb13f164
gnu: Add rust-arr-macro-0.1. 
* gnu/packages/crates-io.scm (rust-arr-macro-0.1): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus ab3082218e
gnu: Add rust-arr-macro-impl-0.1. 
* gnu/packages/crates-io.scm (rust-arr-macro-impl-0.1): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus 9576469cc6
gnu: Add rust-fs-utils-1. 
* gnu/packages/crates-io.scm (rust-fs-utils-1): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus 8acb81ba71
gnu: Add rust-linear-map-1. 
* gnu/packages/crates-io.scm (rust-linear-map-1): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus d8f2e958dd
gnu: Add rust-metrics-0.14. 
* gnu/packages/crates-io.scm (rust-metrics-0.14): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus 90cc8a0752
gnu: Add rust-metrics-macros-0.2. 
* gnu/packages/crates-io.scm (rust-metrics-macros-0.2): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus fe8de9c700
gnu: Add rust-ieee754-0.2. 
* gnu/packages/crates-io.scm (rust-ieee754-0.2): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus 8b5e1ed0df
gnu: Add rust-libdeflate-sys-0.5. 
* gnu/packages/crates-io.scm (rust-libdeflate-sys-0.5): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus e5d060d75c
gnu: Add rust-libz-ng-sys-1. 
* gnu/packages/crates-io.scm (rust-libz-ng-sys-1): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus fe8364e4f6
gnu: Add rust-number-prefix-0.4. 
* gnu/packages/crates-io.scm (rust-number-prefix-0.4): New variable.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus 9d48fbb4fd
gnu: rust-arrayvec-0.7: Update to 0.7.2. 
* gnu/packages/crates-io.scm (rust-arrayvec-0.7): Update to 0.7.2.
 2022-09-23 00:21:38 +02:00
Ricardo Wurmus 4130104b50
gnu: rust-bstr-0.2: Update to 0.2.17. 
* gnu/packages/crates-io.scm (rust-bstr-0.2): Update to 0.2.17.
 2022-09-23 00:21:37 +02:00
Ricardo Wurmus 45cd9aed7c
gnu: rust-crossbeam-queue-0.3: Update to 0.3.6. 
* gnu/packages/crates-io.scm (rust-crossbeam-queue-0.3): Update to 0.3.6.
 2022-09-23 00:21:37 +02:00
Ricardo Wurmus 6814dc6cdc
gnu: rust-crossbeam-channel-0.5: Update to 0.5.6. 
* gnu/packages/crates-io.scm (rust-crossbeam-channel-0.5): Update to 0.5.6.
 2022-09-23 00:21:33 +02:00
Jacob Hrbek f7a68436ed
gnu: Add idevicerestore. 
* gnu/packages/libusb.scm (idevicerestore): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-09-22 21:33:38 +02:00
Jacob Hrbek 5f9d9471c7
gnu: Add libirecovery. 
* gnu/packages/libusb.scm (libirecovery): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-09-22 21:21:03 +02:00
Jonathan Brielmaier 493b6f6d14
gnu: icedove: Update to 91.13.1 [security fixes]. 
Fixes CVE-2022-3032, CVE-2022-3033 and CVE-2022-3034.

* gnu/packages/gnuzilla.scm (icedove): Update to 91.13.1.
 2022-09-22 21:00:24 +02:00
Josselin Poiret 2e8b4f9bfa
installer: Exit console-services page with abort-to-prompt. 
* gnu/installer/newt/services.scm (run-console-services-cbt-page): Do it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-22 16:28:12 +02:00
Josselin Poiret fd942712d8
installer: Ensure luks devices are open when mounting partitions. 
Partially-Fixes: <https://issues.guix.gnu.org/57983>

* gnu/installer/parted.scm (luks-ensure-open): New procedure.
(unmount-user-partitions): Ensure luks devices are open.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-22 16:27:19 +02:00
Josselin Poiret d77612a91b
installer: Return partitions with crypt password as step result. 
* gnu/installer/newt/partition.scm (run-partitioning-page): Do it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-22 16:00:44 +02:00
Josselin Poiret 4814ec284f
installer: Move <secret> to utils and use it for crypt passwords. 
* gnu/installer/user.scm (<secret>, secret?, make-secret, secret-content): Move
to utils.scm.
* gnu/installer/utils.scm (<secret>, secret?, make-secret, secret-content):
Moved from user.scm.
* gnu/installer/newt/partition.scm (prompt-luks-passwords): Make password a
<secret>.
* gnu/installer/parted.scm (luks-format-and-open): Unwrap secret.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-22 16:00:29 +02:00
Guillaume Le Vaillant 3c4024e9f5
gnu: monero-gui: Update to 0.18.1.1. 
* gnu/packages/finance.scm (monero-gui): Update to 0.18.1.1.
 2022-09-22 11:40:10 +02:00
Guillaume Le Vaillant cd4d2b1050
gnu: monero: Update to 0.18.1.1. 
* gnu/packages/finance.scm (monero): Update to 0.18.1.1.
 2022-09-22 11:40:10 +02:00
Hendursaga 81ad759ab9
gnu: Add tetzle. 
* gnu/packages/games.scm (tetzle): New public variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-22 10:17:42 +02:00
Hendursaga 84096a1e84
gnu: gsimplecal: Update to 2.4.1. 
* gnu/packages/calendar.scm (gsimplecal): Update to 2.4.1.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-22 10:06:42 +02:00
Denis 'GNUtoo' Carikli da3bbcc991
gnu: Add keychain. 
* gnu/packages/crypto.scm (keychain): New variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-22 09:56:31 +02:00
Efraim Flashner 85c769709f
gnu: zathura: Remove input labels. 
* gnu/packages/pdf.scm (zathura)[native-inputs]: Remove input labels.
[arguments]: Adjust custom 'start-xserver phase accordingly.
 2022-09-22 10:45:19 +03:00
Efraim Flashner 716f970e6d
gnu: zathura: Update to 0.5.1. 
* gnu/packages/pdf.scm (zathura): Update to 0.5.1.
 2022-09-22 10:45:19 +03:00
Efraim Flashner 6f2e28f026
gnu: vifm: Update to 0.12.1. 
* gnu/packages/vim.scm (vifm): Update to 0.12.1.
[arguments]: Remove trailing #t from phases.
 2022-09-22 10:45:16 +03:00
Pierre Neidhardt 70c40c654c
gnu: sbcl-lisp-unit2: Update to 0.9.4. 
* gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.4.
 2022-09-22 09:28:43 +02:00
Jacob Hrbek 04cad8e29e
gnu: Add ideviceinstaller. 
* gnu/packages/libusb (ideviceinstaller): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-09-22 07:37:16 +02:00
Julien Lepiller 0346e5e090
gnu: ocaml-uucp: Update to 15.0.0. 
* gnu/packages/ocaml.scm (ocaml-uucp): Update to 15.0.0.
(ocaml-uucd): Update to 15.0.0.
 2022-09-22 07:37:11 +02:00
Julien Lepiller 95fdf691b1
gnu: ocaml-uunf: Update to 15.0.0. 
* gnu/packages/ocaml.scm (ocaml-uunf): Update to 15.0.0.
 2022-09-22 07:37:00 +02:00
Julien Lepiller c593429b43
gnu: ocaml-linenoise: Update to 1.4.0. 
* gnu/packages/ocaml.scm (ocaml-linenoise): Update to 1.4.0.
 2022-09-22 07:35:54 +02:00
Julien Lepiller 8734851a8c
gnu: coq: Update to 8.16.0. 
* gnu/packages/coq.scm (coq-core): Update to 8.16.0.
(coq-bignums): Update to 8.16.0.
(coq-equations): Update to 1.3-8.16.
(coq-gappa): Adjust for changes in coq-core.
 2022-09-22 07:34:57 +02:00
Julien Lepiller 9f391b90fa
gnu: coq-interval: Update to 4.5.2. 
* gnu/packages/coq.scm (coq-interval): Update to 4.5.2.
 2022-09-22 07:34:43 +02:00
Julien Lepiller 9140a4dd1d
gnu: coq-mathcomp: Update to 1.15.0. 
* gnu/packages/coq.scm (coq-mathcomp): Update to 1.15.0.
 2022-09-22 07:34:40 +02:00
Julien Lepiller a440e905fd
gnu: coq-gappa: Update to 1.5.2. 
* gnu/packages/coq.scm (coq-gappa): Update to 1.5.2.
 2022-09-22 07:34:37 +02:00
Julien Lepiller 1bb856d90a
gnu: coq-flocq: Update to 4.1.0. 
* gnu/packages/coq.scm (coq-flocq): Update to 4.1.0.
 2022-09-22 07:34:32 +02:00
Julien Lepiller b7971ff798
gnu: lablgtk3: Update to 3.1.2. 
* gnu/packages/ocaml.scm (lablgtk3): Update to 3.1.2.
[arguments]: Do not build extensions anymore (missing dependency)
* gnu/packages/games.scm (laby)[inputs]: Use
  `ocaml-lablgtk3-sourceview3'.
* gnu/packages/maths.scm (frama-c)[inputs]: Use
  `ocaml-lablgtk3-sourceview3'.
* gnu/packages/coq.scm (coq-ide)[inputs]: Use
  `ocaml-lablgtk3-sourceview3'.
 2022-09-22 07:34:02 +02:00
Julien Lepiller 728d5b6b06
gnu: Add ocaml-lablgtk3-sourceview3. 
* gnu/packages/ocaml.scm (ocaml-lablgtk3-sourceview3): New variable.
 2022-09-22 07:33:56 +02:00
Leo Famulari 33d4992b69
gnu: linux-libre 4.9: Update to 4.9.239. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.239.
(linux-libre-4.9-pristine-source): Update hash.
 2022-09-21 22:25:51 -04:00
Leo Famulari 51778457c8
gnu: linux-libre 4.14: Update to 4.14.294. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.294.
(linux-libre-4.14-pristine-source): Update hash.
 2022-09-21 22:25:51 -04:00
Leo Famulari 34a4f4ba2e
gnu: linux-libre 4.19: Update to 4.19.259. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.259.
(linux-libre-4.19-pristine-source): Update hash.
 2022-09-21 22:25:51 -04:00
Leo Famulari c8e1d21fe4
gnu: linux-libre 5.4: Update to 5.4.214. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.214.
(linux-libre-5.4-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
Leo Famulari ceec1c7f83
gnu: linux-libre 5.10: Update to 5.10.144. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.144.
(linux-libre-5.10-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
Leo Famulari 4af8cfad82
gnu: linux-libre 5.15: Update to 5.15.69. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.69.
(linux-libre-5.15-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
Leo Famulari 9b5060f7bf
gnu: linux-libre: Update to 5.19.10. 
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.10.
(linux-libre-5.19-pristine-source): Update hash.
 2022-09-21 22:25:50 -04:00
arkhan 89fed46752
gnu: xonsh: Update to 0.13.3. 
* gnu/packages/shells.scm (xonsh): Update to 0.13.3.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 10:02:38 +08:00
Rostislav Svoboda a3fa6b1e6a
gnu: clojure-tools: Update to 1.11.1.1165. 
* gnu/packages/clojure.scm (clojure-tools): Update to 1.11.1.1165.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:53:07 +08:00
Michael Rohleder d78050c01d
gnu: xfce4-places-plugin: Update to 1.8.2. 
* gnu/packages/xfce.scm (xfce4-places-plugin): Update to 1.8.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:44:40 +08:00
Michael Rohleder a29cd4d911
gnu: xfce4-datetime-plugin: Update to 0.8.2. 
* gnu/packages/xfce.scm (xfce4-datetime-plugin): Update to 0.8.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:43:32 +08:00
Michael Rohleder 83bdd835a9
gnu: xfce4-pulseaudio-plugin: Update to 0.4.5. 
* gnu/packages/xfce.scm (xfce4-pulseaudio-plugin): Update to 0.4.5.
[arguments]: Remove unnecessary phase 'augment-cflags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-09-22 09:41:14 +08:00
Ricardo Wurmus 1a1ff7ed8f
gnu: python-cooler: Skip broken test. 
* gnu/packages/bioinformatics.scm (python-cooler)[arguments]: Add another
patch for tests/test_util.py.
 2022-09-21 22:19:33 +02:00
Ricardo Wurmus cd5bbb9b42
gnu: python-cooler: Do not use flake8. 
* gnu/packages/bioinformatics.scm (python-cooler)[arguments]: Add build phase
'do-not-use-flake8.
 2022-09-21 22:19:33 +02:00
Vagrant Cascadian 97e7195930
gnu: Add python-ephem. 
* gnu/packages/astronomy.scm (python-ephem): New Variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 22:07:27 +02:00
Vagrant Cascadian fff6407df3
gnu: Add python-suntime. 
* gnu/packages/astronomy.scm (python-suntime): New variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 22:05:07 +02:00
Andreas Enge 6885f22375
gnu: gp2c: Update to 0.0.13. 
* gnu/packages/algebra.scm (gp2c): Update to 0.0.13.
 2022-09-21 13:29:13 +02:00
Andreas Enge 2ae22cafe7
gnu: pari-gp: Update to 2.15.0. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.15.0. Modernize syntax.
 2022-09-21 13:29:13 +02:00
Hunter Jozwiak e883ea89c6
gnu: Add espeakup. 
* gnu/packages/accessibility.scm (espeakup): New variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 13:20:56 +02:00
Ricardo Wurmus d871080a41
gnu: Add r-chromunity. 
* gnu/packages/bioinformatics.scm (r-chromunity): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus a7f6392caa
gnu: Add r-skitools. 
* gnu/packages/bioinformatics.scm (r-skitools): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus af663c9e48
gnu: Add r-gchain. 
* gnu/packages/bioinformatics.scm (r-gchain): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus 6ad4d74aca
gnu: Add r-gtrack. 
* gnu/packages/bioinformatics.scm (r-gtrack): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus 29634a4ce3
gnu: Add r-bamutils. 
* gnu/packages/bioinformatics.scm (r-bamutils): New variable.
 2022-09-21 11:09:45 +02:00
Ricardo Wurmus 4bd64dde2b
gnu: Add r-gutils. 
* gnu/packages/bioinformatics.scm (r-gutils): New variable.
 2022-09-21 11:09:41 +02:00
Artyom V. Poptsov d4090c3027
gnu: maven-slf4j-provider: Fix style. 
* gnu/packages/maven.scm (maven-slf4j-provider): Fix style.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 09:07:59 +02:00
Artyom V. Poptsov 79897a3701
gnu: maven-slf4j-provider: Bugfix. 
* gnu/packages/maven.scm (maven-slf4j-provider): Bugfix: Don't use "tar" to
  extract "java-slf4j-simple-source" as it is already unpacked; recursively copy
  the source instead.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 09:07:54 +02:00
Hilton Chain 344405475a
gnu: telegram-desktop: Use API ID from Snap builds. 
* gnu/packages/telegram.scm (telegram-desktop)[#:configure-flags]: Use API ID
from Telegram's official Snap builds.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain a7164abcd0
gnu: telegram-desktop: Use modern package style. 
* gnu/packages/telegram.scm (%telegram-version)
(cmake-helpers-for-telegram-desktop, codegen-for-telegram-desktop)
(lib-base-for-telegram-desktop, lib-crl-for-telegram-desktop)
(lib-lottie-for-telegram-desktop, lib-qr-for-telegram-desktop)
(lib-rlottie-for-telegram-desktop,lib-rpl-for-telegram-desktop)
(lib-spellcheck-for-telegram-desktop, lib-storage-for-telegram-desktop)
(lib-tl-for-telegram-desktop, lib-ui-for-telegram-desktop)
(lib-waylandshells-for-telegram-desktop, lib-webrtc-for-telegram-desktop)
(lib-webview-for-telegram-desktop, tgcalls-for-telegram-desktop): New variables.
(telegram-desktop)[arguments]: Convert to list of G-Expressions.
<#:phases>: Inline cmake-helpers-for-telegram-desktop,
codegen-for-telegram-desktop, lib-base-for-telegram-desktop,
lib-crl-for-telegram-desktop, lib-lottie-for-telegram-desktop,
lib-qr-for-telegram-desktop, lib-rlottie-for-telegram-desktop,
lib-rpl-for-telegram-desktop, lib-spellcheck-for-telegram-desktop,
lib-storage-for-telegram-desktop, lib-tl-for-telegram-desktop,
lib-ui-for-telegram-desktop, lib-waylandshells-for-telegram-desktop,
lib-webrtc-for-telegram-desktop, lib-webview-for-telegram-desktop,
and tgcalls-for-telegram-desktop.
[native-inputs]: Remove cmake-helpers.  Drop labels.
[inputs]: Remove codegen-source, lib-base-source, lib-crl-source,
lib-lottie-source, lib-qr-source, lib-rlottie-source, lib-rpl-source,
lib-spellcheck-source, lib-storage-source, lib-tl-source, lib-ui-source,
lib-waylandshells-source, lib-webrtc-source, lib-webview-source and
tgcalls-source.  Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain e76c93a56b
gnu: webrtc-for-telegram-desktop: Use modern package style. 
* gnu/packages/telegram.scm (libvpx-for-telegram-desktop)
(libyuv-for-telegram-desktop): New variables.
(webrtc-for-telegram-desktop)[arguments]: Convert to list of G-Expressions.
Inline libvpx-for-telegram-desktop and libyuv-for-telegram-desktop.
[inputs]: Remove libvpx and libyuv.  Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain 425e4f6fcd
gnu: telegram-desktop: Delete trailing #t. 
* gnu/packages/telegram.scm (telegram-desktop)[source]: Delete
trailing #t.
[arguments]<#:phases>: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:57 +02:00
Hilton Chain 5ca7ec92f5
gnu: webrtc-for-telegram-desktop: Delete trailing #t. 
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop)[source]: Delete
trailing #t.
[arguments]<#:phases>: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:57 +02:00
Sughosha cb2d5063a0
gnu: Add gnome-console. 
* gnu/packages/gnome.scm (gnome-console): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:56 +02:00
Sughosha d6a16a1dc4
gnu: Add gnome-text-editor. 
* gnu/packages/gnome.scm (gnome-text-editor): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:56 +02:00
Ricardo Wurmus f256614891
gnu: guile-aiscm-next: Deprecate in favor of guile-aiscm. 
* gnu/packages/machine-learning.scm (guile-aiscm-next): Define as a deprecated
name for guile-aiscm.
 2022-09-20 23:57:18 +02:00
Ricardo Wurmus 0d7f2469b5
gnu: guile-aiscm: Update to 0.24.2. 
* gnu/packages/machine-learning.scm (guile-aiscm): Update to 0.24.2.
[arguments]: Add configure flags for OpenCV modules; add build phase
'find-clearsilver; adjust phase 'use-llvm-config; add phase
'disable-broken-test.
[inputs]: Add clearsilver, libgc, opencv, and tensorflow; replace ffmpeg with
ffmpeg-4.
[native-inputs]: Add protobuf-c; replace clang-13 and llvm-13 with clang-11
and llvm-11, respectively.
 2022-09-20 23:57:18 +02:00
Nicolas Goaziou 97bbb9d603
gnu: emacs-rustic: Update to 3.4. 
* gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 3.4.
 2022-09-20 21:22:07 +02:00
Nicolas Goaziou 81cda4134a
gnu: emacs-repl-toggle: Update to 0.7.2. 
* gnu/packages/emacs-xyz.scm (emacs-repl-toggle): Update to 0.7.2.
 2022-09-20 21:22:07 +02:00
Nicolas Goaziou 62911821a1
gnu: emacs-boxquote: Update to 2.3. 
* gnu/packages/emacs-xyz.scm (emacs-boxquote): Update to 2.3.
 2022-09-20 21:22:06 +02:00
Morgan Smith 90a73f6569
gnu: emacs-osm: Update to 0.8. 
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.8.
[arguments]<#:phases>: Add MAKEINFO phase.
[native-inputs]: Add TEXINFO.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-09-20 21:22:06 +02:00
pinoaffe 7c9d8b2e96
gnu: Add emacs-pdfgrep. 
* gnu/packages/emacs-xyz.scm (emacs-pdfgrep): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-09-20 21:22:06 +02:00
Nicolas Goaziou 84dae49340
gnu: emacs-setup: Update to 1.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-setup): Update to 1.3.2.
 2022-09-20 21:22:05 +02:00
Nicolas Goaziou 830405eb48
gnu: emacs-taxy: Update to 0.10.1. 
* gnu/packages/emacs-xyz.scm (emacs-taxy): Update to 0.10.1.
 2022-09-20 21:22:05 +02:00
Ludovic Courtès 6abdcef4a6
linux-container: 'container-excursion*' marks its FDs as FD_CLOEXEC. 
Fixes <https://issues.guix.gnu.org/57827>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

Fixes a regression introduced with the Shepherd 0.9.2 upgrade in
1ba0e38267, whereby IN and OUT would no
longer be closed when 'fork+exec-command/container' would call
'exec-command*' as part of the THUNK passed to 'container-excursion*'.

This is because the Shepherd 0.9.2 assumes file descriptors are properly
marked as O_CLOEXEC and, consequently, 'exec-command' no longer run the
close(2) loop prior to 'exec'.

* gnu/build/linux-container.scm (container-excursion*): Add calls to
'fcntl'.
 2022-09-20 19:24:31 +02:00
Ricardo Wurmus 8084e3bdb3
gnu: python-pyvcf: Update to 0.6.8-0.476169c. 
* gnu/packages/bioinformatics.scm (python-pyvcf): Update to 0.6.8-0.476169c.
 2022-09-20 17:02:34 +02:00
Ricardo Wurmus 9ed635cd9a
gnu: python-pyvcf: Use older setuptools. 
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Replace
python-setuptools with python-setuptools-for-tensorflow.
 2022-09-20 17:02:34 +02:00
Ricardo Wurmus 87a9f03b32
gnu: r-mlr3ordinal: Update to 0.1.0-9000-1.736e3a3. 
* gnu/packages/cran.scm (r-mlr3ordinal): Update to 0.1.0-9000-1.736e3a3.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus f8f3cffedc
gnu: r-desctools: Update to 0.99.46. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.46.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 659efed5c1
gnu: r-clubsandwich: Update to 0.5.8. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.8.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 18df77f876
gnu: r-forcats: Update to 0.5.2. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.2.
[propagated-inputs]: Add r-cli, r-glue, r-lifecycle, and r-withr.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 16c2f27750
gnu: r-sn: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-sn): Update to 2.1.0.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 48e46212c5
gnu: r-matrixmodels: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-1.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 3c35d95b32
gnu: r-rrcov: Update to 1.7-1. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-1.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus 04511fa0de
gnu: r-statmod: Update to 1.4.37. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.37.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 8313464be6
gnu: r-hmisc: Update to 4.7-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.7-1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 2d34ff8133
gnu: r-base64: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-base64): Update to 2.0.1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus b02b5544f2
gnu: r-tidyr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.2.1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 5667e371fa
gnu: r-viridislite: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus aa0865e8cc
gnu: r-rsqlite: Update to 2.2.17. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.17.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 734f64aa17
gnu: r-gtable: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.1.
[native-inputs]: Add r-knitr.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 855bd834c3
gnu: r-rmarkdown: Update to 2.16. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.16.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 44ab19f623
gnu: r-rcpparmadillo: Update to 0.11.2.4.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.4.0.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus 7aba12b6d9
gnu: r-hms: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-hms): Update to 1.1.2.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus beb7ddb41d
gnu: r-rstudioapi: Update to 0.14. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.14.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 0fd63d8584
gnu: r-httr: Update to 1.4.4. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.4.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 06943cf4f1
gnu: r-openssl: Update to 2.0.3. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.0.3.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus f0a4672485
gnu: r-desc: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-desc): Update to 1.4.2.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus aaeaef0d01
gnu: r-rversions: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-rversions): Update to 2.1.2.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus b903dcd55c
gnu: r-dplyr: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.10.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 89251a114f
gnu: r-rlang: Update to 1.0.5. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.5.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 68552107e9
gnu: r-knitr: Update to 1.40. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.40.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 6e47b0f88e
gnu: r-evaluate: Update to 0.16. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.16.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 911224970d
gnu: r-stringr: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.1.
 2022-09-20 17:02:31 +02:00
Ricardo Wurmus 3325cf689a
gnu: r-survival: Update to 3.4-0. 
* gnu/packages/statistics.scm (r-survival): Update to 3.4-0.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus fb381189f7
gnu: r-nlme: Update to 3.1-159. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-159.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus 9e282c408c
gnu: r-matrix: Update to 1.5-1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-1.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus b1d59cb30b
gnu: r-cluster: Update to 2.1.4. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.4.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus 8435311ea6
gnu: r-ggh4x: Update to 0.2.2. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.2.
[propagated-inputs]: Add r-cli and r-lifecycle.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus f41628ed86
gnu: r-wordspace: Update to 0.2-8. 
* gnu/packages/cran.scm (r-wordspace): Update to 0.2-8.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus 3bb3bc8553
gnu: r-webmockr: Update to 0.8.2. 
* gnu/packages/cran.scm (r-webmockr): Update to 0.8.2.
 2022-09-20 17:02:30 +02:00
Ricardo Wurmus 32b429800b
gnu: r-crul: Update to 1.3. 
* gnu/packages/cran.scm (r-crul): Update to 1.3.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus 3f45830596
gnu: r-zoolog: Update to 1.1.0. 
* gnu/packages/cran.scm (r-zoolog): Update to 1.1.0.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus af8dfcee5c
gnu: r-paws-compute: Update to 0.1.13. 
* gnu/packages/cran.scm (r-paws-compute): Update to 0.1.13.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus 3336c70a5f
gnu: r-paws-common: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.5.0.
[propagated-inputs]: Add r-rcpp.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus 854025663c
gnu: r-tfruns: Update to 1.5.1. 
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.1.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus 83ccde1d38
gnu: r-qs: Update to 0.25.4. 
* gnu/packages/cran.scm (r-qs): Update to 0.25.4.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus ce4774f0ec
gnu: r-rapiserialize: Update to 0.1.2. 
* gnu/packages/cran.scm (r-rapiserialize): Update to 0.1.2.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus 381f145df7
gnu: r-exactextractr: Update to 0.9.0. 
* gnu/packages/cran.scm (r-exactextractr): Update to 0.9.0.
 2022-09-20 17:02:29 +02:00
Ricardo Wurmus c4ffadb1e4
gnu: r-gganimate: Update to 1.0.8. 
* gnu/packages/cran.scm (r-gganimate): Update to 1.0.8.
[propagated-inputs]: Remove r-plyr.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus 4632498971
gnu: r-delaporte: Update to 8.0.3. 
* gnu/packages/cran.scm (r-delaporte): Update to 8.0.3.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus 28747e5f45
gnu: r-mlr3tuning: Update to 0.14.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.14.0.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus ac232fe3d0
gnu: r-bbotk: Update to 0.5.4. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.5.4.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus 8a242a64e1
gnu: r-mlr3learners: Update to 0.5.4. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.4.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus 8760fc2a88
gnu: r-mlr3: Update to 0.14.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.14.0.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus 0822d26eb8
gnu: r-lgr: Update to 0.4.4. 
* gnu/packages/cran.scm (r-lgr): Update to 0.4.4.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus 6658442cc1
gnu: r-calculus: Update to 0.3.4. 
* gnu/packages/cran.scm (r-calculus): Update to 0.3.4.
 2022-09-20 17:02:28 +02:00
Ricardo Wurmus ac19f68dde
gnu: r-phangorn: Update to 2.10.0. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.10.0.
[propagated-inputs]: Add r-digest.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus cccad5eedd
gnu: r-seuratobject: Update to 4.1.1. 
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.1.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus 36faa3e971
gnu: r-altmeta: Update to 4.1. 
* gnu/packages/cran.scm (r-altmeta): Update to 4.1.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus d7b2231319
gnu: r-metafor: Update to 3.8-1. 
* gnu/packages/cran.scm (r-metafor): Update to 3.8-1.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus 5078622ffa
gnu: r-modeldata: Update to 1.0.1. 
* gnu/packages/cran.scm (r-modeldata): Update to 1.0.1.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus a2a8615d3e
gnu: r-infer: Update to 1.0.3. 
* gnu/packages/cran.scm (r-infer): Update to 1.0.3.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus 706d117c58
gnu: r-parsnip: Update to 1.0.1. 
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.1.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus ca687072c2
gnu: r-tidytext: Update to 0.3.4. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.3.4.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus e919e4561e
gnu: r-hunspell: Update to 3.0.2. 
* gnu/packages/cran.scm (r-hunspell): Update to 3.0.2.
 2022-09-20 17:02:27 +02:00
Ricardo Wurmus 602ba03fa7
gnu: r-janeaustenr: Update to 1.0.0. 
* gnu/packages/cran.scm (r-janeaustenr): Update to 1.0.0.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus cd16977b72
gnu: r-scico: Update to 1.3.1. 
* gnu/packages/cran.scm (r-scico): Update to 1.3.1.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 024871933c
gnu: r-yardstick: Update to 1.1.0. 
* gnu/packages/cran.scm (r-yardstick): Update to 1.1.0.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus ea03352e0a
gnu: r-iml: Update to 0.11.1. 
* gnu/packages/cran.scm (r-iml): Update to 0.11.1.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 8a3b2bd804
gnu: r-conquer: Update to 1.3.1. 
* gnu/packages/cran.scm (r-conquer): Update to 1.3.1.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 92ec2cdd44
gnu: r-rselenium: Update to 1.7.9. 
* gnu/packages/cran.scm (r-rselenium): Update to 1.7.9.
[propagated-inputs]: Remove r-binman, r-openssl, and r-xml.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 8120ce3527
gnu: r-wdman: Update to 0.2.6. 
* gnu/packages/cran.scm (r-wdman): Update to 0.2.6.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 77082a3302
gnu: r-binman: Update to 0.1.3. 
* gnu/packages/cran.scm (r-binman): Update to 0.1.3.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 72e5d0fe2d
gnu: r-scatterpie: Update to 0.1.8. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.8.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 897c62ad00
gnu: r-posterior: Update to 1.3.1. 
* gnu/packages/cran.scm (r-posterior): Update to 1.3.1.
 2022-09-20 17:02:26 +02:00
Ricardo Wurmus 8b0e24e3e3
gnu: r-distributional: Update to 0.3.1. 
* gnu/packages/cran.scm (r-distributional): Update to 0.3.1.
[propagated-inputs]: Remove r-ellipsis.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus 4eabf31e36
gnu: r-projpred: Update to 2.2.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.2.0.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus da4342ff53
gnu: r-latex2exp: Update to 0.9.5. 
* gnu/packages/cran.scm (r-latex2exp): Update to 0.9.5.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus 47a07d6c36
gnu: r-zseq: Update to 0.2.1. 
* gnu/packages/cran.scm (r-zseq): Update to 0.2.1.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus 4a124387c1
gnu: r-rstan: Update to 2.21.7. 
* gnu/packages/cran.scm (r-rstan): Update to 2.21.7.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus c85630d207
gnu: r-tam: Update to 4.1-4. 
* gnu/packages/cran.scm (r-tam): Update to 4.1-4.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus c1bf0bd4a6
gnu: r-cdm: Update to 8.2-6. 
* gnu/packages/cran.scm (r-cdm): Update to 8.2-6.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus 7469dc9b85
gnu: r-semplot: Update to 1.1.6. 
* gnu/packages/cran.scm (r-semplot): Update to 1.1.6.
 2022-09-20 17:02:25 +02:00
Ricardo Wurmus b311dffdfb
gnu: r-regsem: Update to 1.9.3. 
* gnu/packages/cran.scm (r-regsem): Update to 1.9.3.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus 15ea8ca8ec
gnu: r-matrixextra: Update to 0.1.13. 
* gnu/packages/cran.scm (r-matrixextra): Update to 0.1.13.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus d7e41a6251
gnu: r-matrixcalc: Update to 1.0-6. 
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-6.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus 8643467fe3
gnu: r-quanteda: Update to 3.2.3. 
* gnu/packages/cran.scm (r-quanteda): Update to 3.2.3.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus 96a3a300c6
gnu: r-proxyc: Update to 0.3.2. 
* gnu/packages/cran.scm (r-proxyc): Update to 0.3.2.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus 8ebb59f598
gnu: r-qqconf: Update to 1.3.0. 
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.0.
[propagated-inputs]: Remove r-dplyr, r-magrittr, and r-rlang.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus f1896a804a
gnu: r-anndata: Update to 0.7.5.4. 
* gnu/packages/cran.scm (r-anndata): Update to 0.7.5.4.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus b43a9a1e52
gnu: r-caret: Update to 6.0-93. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-93.
 2022-09-20 17:02:24 +02:00
Ricardo Wurmus 5e3b1e75f7
gnu: r-gdina: Update to 2.9.3. 
* gnu/packages/cran.scm (r-gdina): Update to 2.9.3.
[propagated-inputs]: Add r-nloptr.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 7739531995
gnu: r-randtoolbox: Update to 2.0.2. 
* gnu/packages/cran.scm (r-randtoolbox): Update to 2.0.2.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus eca7c73a47
gnu: r-accsda: Update to 1.1.2. 
* gnu/packages/cran.scm (r-accsda): Update to 1.1.2.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 1ac8852caa
gnu: r-pmcmrplus: Update to 1.9.6. 
* gnu/packages/cran.scm (r-pmcmrplus): Update to 1.9.6.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 07de724b82
gnu: r-lifecycle: Update to 1.0.2. 
* gnu/packages/cran.scm (r-lifecycle): Update to 1.0.2.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 2988d6859a
gnu: r-parameters: Update to 0.18.2. 
* gnu/packages/cran.scm (r-parameters): Update to 0.18.2.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 1755c577bd
gnu: r-tidygraph: Update to 1.2.2. 
* gnu/packages/cran.scm (r-tidygraph): Update to 1.2.2.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 01e279bb8b
gnu: r-terra: Update to 1.6-17. 
* gnu/packages/cran.scm (r-terra): Update to 1.6-17.
 2022-09-20 17:02:23 +02:00
Ricardo Wurmus 294e5589b9
gnu: r-graphlayouts: Update to 0.8.1. 
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.8.1.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus 9686a975c7
gnu: r-covr: Update to 3.6.1. 
* gnu/packages/cran.scm (r-covr): Update to 3.6.1.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus e434557c5a
gnu: r-patchwork: Update to 1.1.2. 
* gnu/packages/cran.scm (r-patchwork): Update to 1.1.2.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus d7b35febfc
gnu: r-leiden: Update to 0.4.3. 
* gnu/packages/cran.scm (r-leiden): Update to 0.4.3.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus e133664c54
gnu: r-uwot: Update to 0.1.14. 
* gnu/packages/cran.scm (r-uwot): Update to 0.1.14.
[propagated-inputs]: Remove r-rspectra.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus 4db93ca44b
gnu: r-umap: Update to 0.2.9.0. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.9.0.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus c9e6f29960
gnu: r-enrichr: Update to 3.1. 
* gnu/packages/cran.scm (r-enrichr): Update to 3.1.
[propagated-inputs]: Add r-curl.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus 3e9da8520d
gnu: r-sctransform: Update to 0.3.4. 
* gnu/packages/cran.scm (r-sctransform): Update to 0.3.4.
 2022-09-20 17:02:22 +02:00
Ricardo Wurmus 544479ba7d
gnu: r-lintr: Update to 3.0.1. 
* gnu/packages/cran.scm (r-lintr): Update to 3.0.1.
 2022-09-20 17:02:21 +02:00
Ricardo Wurmus c027f3ce98
gnu: r-text2vec: Update to 0.6.2. 
* gnu/packages/cran.scm (r-text2vec): Update to 0.6.2.
 2022-09-20 17:02:21 +02:00
Ricardo Wurmus 25013b0ffd
gnu: r-rsparse: Update to 0.5.1. 
* gnu/packages/cran.scm (r-rsparse): Update to 0.5.1.
 2022-09-20 17:02:21 +02:00
Ricardo Wurmus 47676e6b9e
gnu: r-aplot: Update to 0.1.7. 
* gnu/packages/cran.scm (r-aplot): Update to 0.1.7.
 2022-09-20 17:02:21 +02:00