97003b5ccc
gnu: gnuplot: Update to 5.0.1.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
(native-inputs): 'texlive' -> 'texlive-bin'.
2015-11-24 11:41:46 -06:00
cc3de1da41
guix package: Reduce startup time by ~50%.
...
As measured with:
time sh -c 'for i in `seq 1 10` ; do guix package --search-paths ; done'
On my machine, when running:
strace -o ,,s guix package --search-paths
the number returned by:
grep -E '^(open|l?stat).*\.go' ,,s | wc -l
drops from 1610 to 837.
* guix/scripts/package.scm: Remove two unnecessary #:use-module forms.
Autoload (gnu packages ...) modules.
2015-11-24 18:19:25 +01:00
8b749cf3cb
gnu: ruby-simplecov-html: Fix hash and disable tests.
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* gnu/packages/ruby.scm (ruby-simplecov-html)[source]: Replace incorrect
hash.
[arguments]: Disable tests.
2015-11-24 16:39:30 +01:00
5ca2b3c245
build: Add rsem patch to the distribution.
...
This file was added in commit 66e3eff1
2015-11-24 13:15:38 +01:00
38b92daa81
graph: Add '%bag-with-origins-node-type'.
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* guix/scripts/graph.scm (bag-node-edges): Remove 'filter' call. Add
case for 'origin'.
(%bag-node-type)[edges]: Add filtering here.
(%bag-with-origins-node-type): New variable.
(%node-types): Add it.
* tests/graph.scm ("bag DAG, including origins"): New test.
* tests/guix-graph.sh: Add 'bag-with-origins'.
* doc/guix.texi (Invoking guix graph): Document it.
2015-11-23 23:34:15 +01:00
961d0d2d22
doc: Mention the 'NIX_REMOTE' variable for 'guix import nix'.
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Suggested by rgrau on #guix.
* doc/guix.texi (Invoking guix import): Document 'NIX_REMOTE'.
2015-11-23 23:20:41 +01:00
2d7fc7daf1
refresh: Add '--expression'.
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* guix/scripts/refresh.scm (%options, show-help): Add --expression.
(guix-refresh): Honor it.
* doc/guix.texi (Invoking guix refresh): Document it.
2015-11-23 17:48:35 +01:00
160b0ef3fd
Thank Jan.
2015-11-23 17:48:35 +01:00
86cdfc451b
guix download: Fail when more than one URL is passed.
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* guix/scripts/download.scm (guix-download)[parse-option]: Call 'leave'
when passed an extra argument.
* tests/guix-download.sh: Add test.
2015-11-23 17:48:35 +01:00
71ae18ee52
guix download: Gracefully handle missing arguments.
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Fixes <http://bugs.gnu.org/21991 >.
Reported by Jan Synáček <jan.synacek@gmail.com>.
* guix/scripts/download.scm (guix-download): Call 'leave' when OPTS does
not contain an 'argument' key.
2015-11-23 17:48:35 +01:00
bbee7bd765
gnu: enca: Add file-name field to source.
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* gnu/packages/textutils.scm (enca): Add file-name field to source.
2015-11-23 13:46:31 +01:00
6f323b0773
gnu: recode: Add file-name field to source.
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* gnu/packages/textutils.scm (recode): Add file-name field to source.
2015-11-23 12:05:55 +01:00
821f4dc287
gnu: Fix a few 'source-file-name' lint warnings.
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* gnu/packages/firmware.scm (ath9k-htc-firmware)[source](file-name): New
field.
* gnu/packages/gnunet.scm (guile-gnunet)[source](file-name): New field.
* gnu/packages/guile.scm (guile-next)[source](file-name): New field.
(guile-minikanren)[source](file-name): New field
(guile-gdbm-ffi)[source](file-name): New field.
* gnu/packages/ssh.scm (guile-ssh)[source](file-name): New field.
2015-11-23 10:52:32 +01:00
59dc56390d
emacs: Expand 'guix-load-path'.
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Reported by Mathieu Lirzin <mthl@gnu.org> at
<http://lists.gnu.org/archive/html/guix-devel/2015-11/msg00585.html >.
* emacs/guix-backend.el (guix-start-repl): Expand 'guix-load-path' to
avoid a potentially relative directory name in Guile %load-path.
2015-11-23 11:33:55 +03:00
862d2479f6
ftp-client: Default port for 'ftp-open' is now "ftp".
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* guix/ftp-client.scm (ftp-open): Change default #:port to "ftp".
* guix/scripts/lint.scm (probe-uri): Remove 'port' parameter to
'ftp-open'.
2015-11-22 14:35:28 +01:00
d6d33984df
ftp-client: Fix off-by-one when trying addresses in 'ftp-open'.
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* guix/ftp-client.scm (ftp-open): Change to use 'match' instead of
car/cdr, and fix off-by-one (was '(null? addresses)' instead of
'(null? (cdr addresses))'.)
2015-11-22 14:16:36 +01:00
5fb95cc592
doc: Mention 'guix environment guix'.
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* doc/contributing.texi (Building from Git): Mention 'guix environment
guix'. Remove outdated description of ./bootstrap. Clarify a few
things.
2015-11-22 14:14:25 +01:00
82e64fc14e
environment: Correctly handle abnormal exits.
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Fixes <http://bugs.gnu.org/21958 >.
* guix/scripts/environment.scm (status->exit-code): New procedure.
(exit/status, primitive-exit/status): Use it.
* tests/guix-environment-container.sh: Add test.
2015-11-21 22:26:13 +01:00
6493fd0458
tests: Skip 'guix-container-environment.sh' when support is missing.
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Fixes <http://bugs.gnu.org/21410 >.
Reported by Alex Vong <alexvong1995@gmail.com>.
* tests/guix-environment-container.sh: Exit with 77 when
'((@@ (guix scripts environment) assert-container-features))' fails.
2015-11-21 22:26:13 +01:00
aabe6d3801
doc: Remove extraneous "See."
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* doc/contributing.texi (Building from Git): Remove extra "See" and use
@xref instead of @pxref.
2015-11-21 22:26:13 +01:00
92d9a36e97
gnu: tig: Update to 2.1.1.
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* gnu/packages/version-control.scm (tig): Update to 2.1.1.
2015-11-21 23:03:11 +02:00
7fbbd3e7a0
gnu: cvs: Use external zlib.
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* gnu/packages/version-control.scm (cvs)[arguments]: add configure flag
--with-exernal-zlib.
2015-11-21 21:43:11 +02:00
f94f481988
gnu: nano: Update to 2.4.3.
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* gnu/packages/nano.scm (nano): Update to 2.4.3.
2015-11-21 20:56:08 +02:00
a51cbecb44
refresh: Rewrite '--list-dependent' in terms of (guix graph).
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* guix/scripts/refresh.scm (all-packages, list-dependents): New
procedures.
(guix-refresh): Use it.
2015-11-21 16:27:34 +01:00
923d846c4d
graph: Add procedures to query a node's edges.
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* guix/graph.scm (%node-edges, node-edges, node-back-edges)
(node-transitive-edges): New procedures.
* tests/graph.scm ("node-edges")
("node-transitive-edges + node-back-edges"): New tests.
2015-11-21 16:26:43 +01:00
8fb583714f
Add (guix graph).
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* guix/scripts/graph.scm (<node-type>, <graph-backend>, emit-prologue)
(emit-epilogue, emit-node, emit-edge, %graphviz-backend, export-graph):
Move to...
* guix/graph.scm: ... here. New file.
* guix/scripts/system.scm, tests/graph.scm: Use it.
* Makefile.am (MODULES): Add it.
2015-11-21 16:26:43 +01:00
1b933e62dc
gnu: parted: Update to 3.2.
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* gnu/packages/disk.scm (parted): Update to 3.2.
[inputs]: Add lvm2 and remove check. Replace readline-6.2 with its
latest version.
[native-inputs]: Add perl and python for the tests.
[arguments]: Use `modify-phases' and adapt to the new tests.
[home-page]: Use https.
2015-11-21 13:10:27 +01:00
06da1a6b4f
gnu: Add qemu-minimal.
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* gnu/packages/qemu.scm (qemu): Exchange with former QEMU-HEADLESS.
(qemu-headless): Rename to...
(qemu-minimal): ... this. New variable. Pass --target-list.
* gnu/packages/debug.scm (qemu-2.3.0): Inherit from QEMU-MINIMAL.
* gnu/packages/grub.scm (qemu-for-tests): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm, qemu-image):
Update to name change.
2015-11-21 00:36:23 +01:00
bb38ece458
doc: Fix 'geiser-guile-load-path' example.
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Reported by marusich on #guix.
* doc/contributing.texi (The Perfect Setup): Wrap modifying
'geiser-guile-load-path' into 'with-eval-after-load'.
2015-11-21 02:19:04 +03:00
56215e4154
gnu: Add Synfig Studio.
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* gnu/packages/animation.scm (synfigstudio): New variable.
2015-11-20 20:23:03 +01:00
7775a18690
gnu: Add Synfig.
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* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-20 20:23:03 +01:00
c1fbc66a77
gnu: Add ETL.
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* gnu/packages/animation.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-11-20 20:23:03 +01:00
307ad140db
gnu: Add MLT.
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* gnu/packages/video.scm (mlt): New variable.
2015-11-20 20:23:03 +01:00
561965941c
gnu: Add libxml++.
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* gnu/packages/gnome.scm (libxml++): New variable.
2015-11-20 20:23:03 +01:00
9cf5245497
gnu: slepc: Update to 3.6.2.
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* gnu/packages/maths.scm (slepc): Update to 3.6.2.
[arguments]: Append "/lib" to arpack configure flag. Use 'inputs'
rather than '%build-inputs' in 'configure phase.
2015-11-20 11:58:40 -06:00
32187d99bb
gnu: petsc: Update to 3.6.2.
...
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
2015-11-20 11:58:40 -06:00
c69fa4380a
gnu: mumps: Update to 5.0.1.
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* gnu/packages/maths.scm (mumps): Update to 5.0.1.
2015-11-20 11:58:40 -06:00
ac356fd6ab
gnu: openmpi: Update to 1.10.1.
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* gnu/packages/mpi.scm (openmpi): Update to 1.10.1.
[arguments]: Remove now-unsupported configure flags. Add
--enable-builtin-atomics. Remove development-oriented
--enable-debug.
2015-11-20 11:58:40 -06:00
2f5b6a1f18
gnu: hwloc: Update to 1.11.1.
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* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
[source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 11:58:40 -06:00
0297966495
gnu: guitarix: Update to 0.34.0.
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* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 18:19:30 +01:00
a907d9973a
gnu: services: Fix typo in gpm-dmd-service.
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* gnu/services/base.scm (gpm-dmd-service): s/dmd/gpm/
2015-11-20 09:56:41 -05:00
3307c7877e
gnu: Add emulation-station.
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* gnu/packages/games.scm (emulation-station): New variable.
2015-11-20 09:27:15 -05:00
b49c5a58dc
gnu: preseq: Update to 2.0.
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* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
file.
* gnu-system.am (dist_patch_DATA): Remove them.
2015-11-20 15:22:06 +01:00
c6a24d6e92
gnu: Add smithlab-cpp.
...
* gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
2015-11-20 15:22:06 +01:00
3d51ec919e
gnu: edirect: Update home page.
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* gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing
slash to home page.
2015-11-20 15:21:24 +01:00
c52a382c4a
gnu: sra-tools: Update to 2.5.4.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
2015-11-20 15:21:24 +01:00
9e5ef614aa
gnu: ncbi-vdb: Update to 2.5.4.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
2015-11-20 15:21:24 +01:00
614a8977cb
gnu: ngs-java: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
2015-11-20 15:21:24 +01:00
d6a1cd7cae
gnu: ngs-sdk: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
2015-11-20 15:21:24 +01:00
2c84ba7e11
gnu: Add ruby-net-ssh.
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* gnu/packages/ruby.scm (ruby-net-ssh): New variable.
2015-11-20 15:21:24 +01:00
Eric Bavier
Ludovic Courtès
Ricardo Wurmus
Taylan Ulrich Bayırlı/Kammer
Alex Kost
Efraim Flashner
Mathieu Lirzin
Ricardo Wurmus
David Thompson