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86837 Commits (9873a3a710aa182c2deaeb06396290d9f678e9c7)

Author SHA1 Message Date
Ricardo Wurmus 6303dcbc85
gnu: r-geoquery: Update to 2.64.2. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.64.2.
[propagated-inputs]: Remove r-httr; add r-curl.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 52b158dca5
gnu: r-scone: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.20.0.
 2022-05-28 23:19:23 +02:00
Ricardo Wurmus 4221d4588b
gnu: r-scdd: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.20.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 579e05dd9a
gnu: r-noiseq: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.40.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 84d78abd52
gnu: r-monocle: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.0.
[propagated-inputs]: Remove r-densityclust; add r-leidenbase.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 2fb6818ab8
gnu: r-mast: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.22.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 70f5a74778
gnu: r-residualmatrix: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 76ec28f63b
gnu: r-icobra: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.24.1.
[propagated-inputs]: Add r-markdown.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 00da479a7b
gnu: r-ihw: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.24.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 5a23854532
gnu: r-lpsymphony: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.24.0.
 2022-05-28 23:19:22 +02:00
Ricardo Wurmus 266df31f5d
gnu: r-karyoploter: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.22.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 3de4ed3fc6
gnu: r-ebseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.36.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 9af002ee18
gnu: r-dnacopy: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.70.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus db8cb101d6
gnu: r-copynumber: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.36.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus f8bab3c5e7
gnu: r-chipexoqual: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.20.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 9641d32660
gnu: r-savr: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.34.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 0258381d43
gnu: r-destiny: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.10.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus 5aad467251
gnu: r-biocsingular: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.12.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus a2cc02fea8
gnu: r-metapod: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.4.0.
 2022-05-28 23:19:21 +02:00
Ricardo Wurmus e2ec50a938
gnu: r-ggtree: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 21715b19d3
gnu: r-treeio: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 8026665191
gnu: r-scaledmatrix: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus ccee3dcc6b
gnu: r-biocneighbors: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.14.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 0190978dcf
gnu: r-ruvseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.30.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 8b475c3e92
gnu: r-dnabarcodes: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.26.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus d6c3acb1c2
gnu: r-inspect: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.26.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 86dd93110e
gnu: r-plgem: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.68.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus a028875b63
gnu: r-rots: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.24.0.
 2022-05-28 23:19:20 +02:00
Ricardo Wurmus 09d4735055
gnu: r-glimma: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.6.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 53b152b2cf
gnu: r-goseq: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.48.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 6d9a73c847
gnu: r-ctc: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.70.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 120329918b
gnu: r-genomicinteractions: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.30.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 6695c4e33b
gnu: r-interactionset: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.24.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 292efe0ae2
gnu: r-riboseqr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.30.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus 2a8444ca5c
gnu: r-riboprofiling: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.26.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus d47ffaf7ee
gnu: r-chipcomp: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.26.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus d6559d1e1b
gnu: r-bayseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.30.0.
 2022-05-28 23:19:19 +02:00
Ricardo Wurmus ecd2d01d1e
gnu: r-qdnaseq: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.32.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 3dd1b0508d
gnu: r-cghcall: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.58.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 7188427b5c
gnu: r-cghbase: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.56.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus a7c3f7f2b1
gnu: r-marray: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.74.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus a1da6d7d45
gnu: r-matrixgenerics: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus ef5c266f23
gnu: r-chippeakanno: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus d825e79fc8
gnu: r-graph: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.74.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus de49b64b69
gnu: r-multtest: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.52.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus f6c6605102
gnu: r-mbkmeans: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.12.0.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 7bc3e13bf5
gnu: r-diffbind: Update to 3.6.1. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.1.
 2022-05-28 23:19:18 +02:00
Ricardo Wurmus 84fc29bad6
gnu: r-greylistchip: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.28.1.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 21db7a48e0
gnu: r-apeglm: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.18.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus ec76f7ca9b
gnu: r-qvalue: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.28.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 8a2e344cf7
gnu: r-oligo: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.60.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 4ee5d02e70
gnu: r-oligoclasses: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.58.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 4268f796c8
gnu: r-geneplotter: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.74.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 2b652812e8
gnu: r-zellkonverter: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.1.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 2bc32aa065
gnu: r-zlibbioc: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.42.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 2b36da1784
gnu: r-xvector: Update to 0.36.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.36.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus 036dcaed7d
gnu: r-xmapbridge: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.54.0.
 2022-05-28 23:19:17 +02:00
Ricardo Wurmus e7a0b14115
gnu: r-xina: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-xina): Update to 1.14.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus be389d989d
gnu: r-vsn: Update to 3.64.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.64.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus a9d0efc639
gnu: r-variantannotation: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.42.1.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 131135458e
gnu: r-tximport: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.24.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 47cdb42840
gnu: r-topgo: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.48.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus de403d02ad
gnu: r-systempiper: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.2.2.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 02c26f40b7
gnu: r-sva: Update to 3.44.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.44.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus a0734f8bdd
gnu: r-summarizedexperiment: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.26.1.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus 8037227617
gnu: r-structuralvariantannotation: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.12.0.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus d044d62102
gnu: r-stringdb: Update to 2.8.4. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.8.4.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus ed19cbbf15
gnu: r-stager: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.18.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 8d1ab3f57d
gnu: r-slingshot: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.4.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 3f873a27e0
gnu: r-trajectoryutils: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.4.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 909d580b9a
gnu: r-transcriptr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.24.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 9b935eaa56
gnu: r-simplifyenrichment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.0.
[propagated-inputs]: Add r-colorspace and r-globaloptions.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 6d2b2e0ad9
gnu: r-shortread: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.54.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 27588f020d
gnu: r-seqpattern: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.28.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 5346b424cc
gnu: r-seqlogo: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.62.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus a260fc5a90
gnu: r-scdblfinder: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.10.0.
[propagated-inputs]: Add r-genomeinfodb, r-genomicranges, r-iranges, r-rsamtools, and
r-rtracklayer.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus 021ab21b57
gnu: r-scannotatr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.2.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus ea283a3cda
gnu: r-rtracklayer: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 990ee0c7cc
gnu: r-rsamtools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.12.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus a8c63ab610
gnu: r-rhdf5filters: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.8.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 3c31e7e249
gnu: r-rhdf5: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.40.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus de8b8c86e6
gnu: r-reportingtools: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.36.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 21669d75f6
gnu: r-regioner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 9d05a948ea
gnu: r-rcas: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.22.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 1a873db6b2
gnu: r-rbgl: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.72.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus 2b7c604ebf
gnu: r-protgenerics: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus d4201b5f61
gnu: r-pcamethods: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.88.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus e3878bc3c0
gnu: r-organismdbi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d1134b61fd
gnu: r-mzr: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 3eb763c2ba
gnu: r-mzid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.34.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6fe1e2d12
gnu: r-msnid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.30.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus d6f683b561
gnu: r-msnbase: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 8ec1ca001d
gnu: r-mutationalpatterns: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.6.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 56741afedd
gnu: r-methylkit: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 0cb9ffc4e3
gnu: r-limma: Update to 3.52.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.1.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus cb17da65a5
gnu: r-lfa: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.26.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus 2a3372953d
gnu: r-keggrest: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus a6cb10afc3
gnu: r-interactivedisplaybase: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.34.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus cd9b5f0029
gnu: r-impute: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.70.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus bb2b2f6543
gnu: r-rhtslib: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.28.0.
 2022-05-28 23:19:12 +02:00