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Author SHA1 Message Date
Sharlatan Hellseher 7b2c290956
gnu: go-github-com-chris-ramon-douceur: Move to (gnu packages golang-web). 
* gnu/packages/golang.scm (go-github-com-chris-ramon-douceur): Move from
here...
* gnu/packages/golang-web.scm: ...to here.

Change-Id: I9d0fdccc4ff557870dad60e9ac062ccb2e995979
 2024-01-03 16:35:14 -05:00
Sharlatan Hellseher 5dbb2511e7
gnu: go-github-com-puerkitobio-goquery: Move to (gnu packages golang-web). 
* gnu/packages/golang.scm (go-github-com-puerkitobio-goquery): Move from
here...
* gnu/packages/golang-web.scm: ...to here.

Change-Id: Ic0415a8b280ebd12086a5976c9765c1dbbf50bd2
 2024-01-03 16:35:14 -05:00
Sharlatan Hellseher 1bc5e65aad
gnu: go-github-com-andybalholm-cascadia: Move to (gnu packages golang-web). 
* gnu/packages/golang.scm (go-github-com-andybalholm-cascadia): Move from
here...
* gnu/packages/golang-web.scm: ...to here.

Change-Id: I185cb923d21685eb5a3952b9990833d3a0709312
 2024-01-03 16:35:13 -05:00
Sharlatan Hellseher 213a54e8de
gnu: go-github-com-aymerick-douceur: Move to (gnu packages golang-web). 
* gnu/packages/golang.scm (go-github-com-aymerick-douceur): Move from
here...
* gnu/packages/golang-web.scm: ...to here.

Change-Id: I2e94858736f88333f56d4eb4301acd35e6bb1a33
 2024-01-03 16:35:13 -05:00
Sharlatan Hellseher d17d7e6ca1
gnu: go-github-com-gorilla-css: Move to (gnu packages golang-web). 
* gnu/packages/golang.scm (go-github-com-gorilla-css): Move from
here...
* gnu/packages/golang-web.scm: ...to here.

* gnu/packages/configuration-management.sc: Add (gnu packages golang-web) module.
* gnu/packages/golang.scm: As above...

Change-Id: I6e387966d05c40321b9116b93d76fce68aad8c7f
 2024-01-03 16:35:13 -05:00
Sharlatan Hellseher a0006c4dc5
gnu: go-github-com-gorilla-mux: Move to (gnu packages golang-web). 
* gnu/packages/golang.scm (go-github-com-gorilla-mux): Move from
here...
* gnu/packages/golang-web.scm: ...to here.

* gnu/packages/finance.scm: Add (gnu packages golang-web) module.
* gnu/packages/web.scm: As above...

Change-Id: I1cb94377d581af93593dbb29cb60ddf5fb287ada
 2024-01-03 16:35:13 -05:00
Sharlatan Hellseher d14389f10e
gnu: Add (gnu packages golang-web) module. 
* gnu/packages/golang-web.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-web.scm scope.
 2024-01-03 16:35:12 -05:00
Connor Clark 2f642b6023
services: docker: Add config-file option. 
* gnu/services/docker.scm (docker-configuration)[config-file] Add file-like
field.
* doc/guix.texi (Docker Service): Add information about config-file.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-03 15:32:01 +01:00
Zheng Junjie c880652fec
gnu: libassuan: Fix cross-compiling. 
gnu/packages/gnupg.scm(libassuan):
[arguments]: When cross-compiling, set the --with-libgpg-error-prefix configure option.

Change-Id: I320c48f320c34939a8e94589610beb5c40fdf53a
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-03 15:32:01 +01:00
Zheng Junjie ae63bb5e7d
gnu: grim: Fix cross-compiling. 
gnu/packages/image.scm(grim):
[native-inputs]: When cross compiling, add wayland, pkg-config-for-build.

Change-Id: I9dbf99d0bc92a62b17ded36937827dfbc6b29bb2
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-03 15:32:01 +01:00
Zheng Junjie 2d38579e01
gnu: grim: Update to 1.4.1. 
* gnu/packages/image.scm (grim): Update to 1.4.1.
[home-page]: update to new home-page
[source]: update url.

Change-Id: I8c2e4ebbf198df7cedda7c1c946ecb33a6e92fb1
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-03 15:32:01 +01:00
Zheng Junjie aed1b57081
gnu: slurp: Update to 1.5.0. 
* gnu/packages/image.scm (slurp): Update to 1.5.0.

Change-Id: I72a60742af26a2544ee21e052963c0a8ad549d0e
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-03 15:32:01 +01:00
Zheng Junjie 24eb32f280
gnu: slurp: Fix cross-compiling. 
gnu/packages/image.scm(slurp):
[native-inputs]: When cross compiling, add wayland, pkg-config-for-build.

Change-Id: I5000d681b1428c5b7d123239c1f1ba00f121fb7e
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-03 15:32:01 +01:00
Zheng Junjie 80f6e5a9ea
gnu: vulkan-loader: Fix cross-compiling. 
gnu/packages/vulkan.scm(vulkan-loader):
[arguments]<#:configure-flags>: When cross-compiling, set -DBUILD_TESTS=OFF
and -DUSE_GAS=OFF.
[inputs]: Add libxrandr.

Change-Id: I580e1c77c4b9b5a3483e93ff9eda78fbe07ec292
 2024-01-03 15:32:01 +01:00
Zheng Junjie e2ad70c951
gnu: glew: Fix cross-compiling. 
gnu/packages/gl.scm(glew):
[arguments]<#:make-flags>: when cross-compiling, use {cc,strip}-for-target.

Change-Id: I365f6635120a85359083beb88cb138f09a99fe33
 2024-01-03 15:32:01 +01:00
Ekaitz Zarraga 5312b63ea0
gnu: icedove-minimal: Add argument to desktop file. 
Icedove was not able to handle mailto: links, even if it responded to
them, it only activated the window, but didn't compose a new email.
Calling it directly by `icedove mailto:...` worked. According to:
<https://lists.debian.org/debian-user/2015/06/msg01071.html>
It was missing the argument in the `Exec` line of the desktop file.

* gnu/packages/gnuzilla.scm (icedove-minimal)[phases]
  {install-desktop-file}: Add arguments to Exe line in .desktop file.

Change-Id: I3de5e57ed2c5eef23eee88e264487e6460c174b3
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-03 16:03:09 +02:00
Ricardo Wurmus f462800002
gnu: Add cpat. 
* gnu/packages/bioinformatics.scm (cpat): New variable.

Change-Id: I7b3acca1bdec2610d7cdaaf6f96440fe000421dd
 2024-01-02 22:47:07 +01:00
Ricardo Wurmus 8ed9ffedd4
gnu: Add r-sleuth. 
* gnu/packages/bioinformatics.scm (r-sleuth): New variable.

Change-Id: Ic358945548631fd3ac5de96b2efcf1fd93005898
 2024-01-02 21:49:13 +01:00
Ricardo Wurmus ebd00a4e91
gnu: r-tgutil: Update to 0.1.15-1.db4ff8b. 
* gnu/packages/statistics.scm (r-tgutil): Update to 0.1.15-1.db4ff8b.
[description]: Update to use full sentences.

Change-Id: I6cb7e60b0759bd307a676783a9ceb9c451ce7a82
 2024-01-02 21:45:16 +01:00
Ricardo Wurmus fb3ac987c9
gnu: Add r-wasabi. 
* gnu/packages/bioinformatics.scm (r-wasabi): New variable.

Change-Id: I5ce6c47f1fb3b1d5dfedd0977e53cb70ce379077
 2024-01-02 21:40:44 +01:00
Ricardo Wurmus e8814809c2
gnu: Add r-toast. 
* gnu/packages/bioconductor.scm (r-toast): New variable.

Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6
 2024-01-02 19:23:51 +01:00
Ricardo Wurmus 5b030de386
gnu: Add r-epidish. 
* gnu/packages/bioconductor.scm (r-epidish): New variable.

Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4
 2024-01-02 19:22:13 +01:00
Ricardo Wurmus f1bf43cdff
gnu: r-excelr: Reuse minify-build-system tools. 
* gnu/packages/cran.scm (r-excelr)[arguments]: Use minify-build-system.
[native-inputs]: Use git repository for jexcel.js.
[description]: Reformat.

Change-Id: I82f7e466bbab6ad837359f04ee616a7766433c13
 2024-01-02 18:36:21 +01:00
Nicolas Goaziou 85dabe71e6
gnu: emacs-org-web-tools: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-org-web-tools)[propagated-inputs]: Add EMACS-PLZ.

Change-Id: Icf62d3774257f7b93e114503e6c31ea2fb81d807
 2024-01-02 17:46:45 +01:00
Ricardo Wurmus 8f03c69b42
gnu: r-vcd: Update to 1.4-12. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-12.

Change-Id: I5db4c5aeb21692312e05dc6483c4e52a6ec23888
 2024-01-02 14:26:10 +01:00
Sergey Trofimov 344108df68
gnu: emacs-telega-server: Update to 0.8.230. 
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.8.230.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-02 12:50:15 +03:00
Sergey Trofimov 707921ba23
gnu: tdlib: Update to 1.8.23. 
* gnu/packages/messaging.scm (tdlib): Update to 1.8.23.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-02 12:50:14 +03:00
Mădălin Ionel Patrașcu 404c4a5aba
gnu: Add r-projectils. 
* gnu/packages/bioinformatics.scm (r-projectils): New variable.

Change-Id: Ia975cfcb9c79e59b029c6839dc87b5dcb89bf72a
 2024-01-02 10:19:35 +01:00
Mădălin Ionel Patrașcu c8e2b85ed1
gnu: Add r-stacas. 
* gnu/packages/bioinformatics.scm (r-stacas): New variable.

Change-Id: I258a315465ed88b8013d26a36718250c950aa107
 2024-01-02 10:19:35 +01:00
Mădălin Ionel Patrașcu 7593364d70
gnu: Add r-scgate. 
* gnu/packages/bioconductor.scm (r-scgate): New variable.

Change-Id: I441bbea5a68882f5f619dea72abdf84619c9d02f
 2024-01-02 10:19:29 +01:00
Nicolas Goaziou f2102cb5b9
gnu: emacs-yaml: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-yaml):
[arguments]: Run tests.

Change-Id: Ie395af0fb107313170509986e1ee2d0d996c6689
 2024-01-02 00:43:13 +01:00
Nicolas Goaziou db1d91ae6f
gnu: emacs-yaml: Update to 0.5.5. 
* gnu/packages/emacs-xyz.scm (emacs-yaml): Update to 0.5.5.

Change-Id: Id20c84596a74cd44055fc70892c4b843555c5ca7
 2024-01-02 00:43:13 +01:00
Nicolas Goaziou cb0fd4b412
gnu: emacs-vertico: Update to 1.6. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 1.6.

Change-Id: I944b8016f1afdd7d588f9940da6c9bd5b73c6787
 2024-01-02 00:43:13 +01:00
Nicolas Goaziou 4828d4bf4f
gnu: emacs-transient: Update to 0.5.3. 
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.5.3.

Change-Id: Ie770cec3eab70e9a5e010adf3341d1e7dc9590db
 2024-01-02 00:43:12 +01:00
Nicolas Goaziou f4667feaea
gnu: emacs-org-web-tools: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-org-web-tools): Update to 1.3.

Change-Id: Id555aa9788cdeaa7a6fe1c27d33839b22b22234b
 2024-01-02 00:43:12 +01:00
Nicolas Goaziou 310f7e94db
gnu: emacs-org-re-reveal: Update to 3.24.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.24.2.

Change-Id: I35af71a8f93c823bc405de51553ffbfcf14d9040
 2024-01-02 00:43:12 +01:00
Nicolas Goaziou 8023d1d25a
gnu: emacs-org-ql: Update to 0.8. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.8.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: I62149e53160ceb249ef49c052c28ecb30dd2a717
 2024-01-02 00:43:12 +01:00
Nicolas Goaziou de03608b35
gnu: emacs-prescient: Update to 6.2. 
* gnu/packages/emacs-xyz.scm (emacs-prescient): Update to 6.2.

Change-Id: I11041e12583ec5a84924daf70b56690a2de772e5
 2024-01-02 00:43:11 +01:00
Nicolas Goaziou 0e1237204d
gnu: emacs-php-mode: Update to 1.25.1. 
* gnu/packages/emacs-xyz.scm (emacs-php-mode): Update to 1.25.1.

Change-Id: Ia9b91ee48f2faa55bf479568cd1f42b49a060b4d
 2024-01-02 00:43:11 +01:00
Nicolas Goaziou 746b4d639f
gnu: emacs-parseedn: Update to 1.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-parseedn): Update to 1.2.1.

Change-Id: I4d6fd0b3a5e134002695368ea1184c24d9fcef8d
 2024-01-02 00:43:11 +01:00
Nicolas Goaziou aca2259d7d
gnu: emacs-parseclj: Update to 1.1.1. 
* gnu/packages/emacs-xyz.scm (emacs-parseclj): Update to 1.1.1.

Change-Id: I9a2bbbf3e575623993421bedee0ebce58658b0c8
 2024-01-02 00:43:11 +01:00
Nicolas Goaziou 80bbdf4f10
gnu: emacs-org: Update to 9.6.14. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.6.14.

Change-Id: I75bd6ce590f269c2796ebf63a7b9ff51cf9d1b6e
 2024-01-02 00:43:10 +01:00
Nicolas Goaziou 8553499aee
gnu: emacs-osm: Update to 1.2. 
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 1.2.

Change-Id: I794f486f2fc9dd4dab186c7dbd77f8a79532dedd
 2024-01-02 00:43:10 +01:00
Nicolas Goaziou 62898c2676
gnu: emacs-jsonrpc: Update to 1.0.23. 
* gnu/packages/emacs-xyz.scm (emacs-jsonrpc): Update to 1.0.23.

Change-Id: Ie676ff2b113e962a328f637a88caeefb58892ee7
 2024-01-02 00:43:10 +01:00
Nicolas Goaziou 791bd4ca89
gnu: emacs-mood-line: Update to 3.1.1. 
* gnu/packages/emacs-xyz.scm (emacs-mood-line): Update to 3.1.1.

Change-Id: I3511f594fb499722bf2f22581e5c151d920552f0
 2024-01-02 00:43:10 +01:00
Nicolas Goaziou 7ce1c8aecb
gnu: emacs-mc-extras: Update to 1.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-mc-extras): Update to 1.3.0.

Change-Id: I0550c0a04e6a5ed188e4740e2c65d68162822a9e
 2024-01-02 00:43:09 +01:00
Nicolas Goaziou 27ab4e948a
gnu: emacs-marginalia: Update to 1.5. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 1.5.

Change-Id: Id57e4fe99764856dc46ae3324077a00b6ac0af52
 2024-01-02 00:43:09 +01:00
Nicolas Goaziou 5a977eb98c
gnu: emacs-keycast: Update to 1.3.3. 
* gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.3.3.

Change-Id: I771419e3cd2281fa8577e411e66fe7d006a91f89
 2024-01-02 00:43:09 +01:00
Nicolas Goaziou 0a5cde84f6
gnu: emacs-json-mode: Update to 1.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-json-mode): Update to 1.9.0.

Change-Id: I47d1ff6f21cdb1055ab0dea61e0768f391087a2e
 2024-01-02 00:43:09 +01:00
Nicolas Goaziou c38dd0c482
gnu: emacs-js2-mode: Update to 20231224. 
* gnu/packages/emacs-xyz.scm (emacs-js2-mode): Update to 20231224.

Change-Id: Iffbe84ddee2559b526ba4345f4ff14f6ac1ca050
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou 2c5cf24680
gnu: emacs-jinx: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-jinx): Update to 1.1.

Change-Id: I58919dd335a7f93339b362e95fc99449e80d2c31
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou 60dc957e2f
gnu: emacs-inf-ruby: Update to 2.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-inf-ruby): Update to 2.8.1.

Change-Id: I7f46a1ee645a24f96077cc70bf0ad30706979eb5
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou ff808d4d22
gnu: emacs-helm: Update to 3.9.6. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.9.6.

Change-Id: Ica2d7af2db908e37f17f6e4f8d8b83de3a5af349
 2024-01-02 00:43:08 +01:00
Nicolas Goaziou 47a67d34b2
gnu: emacs-haskell-mode: Update to 17.5. 
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode): Update to 17.5.
* gnu/packages/patches/emacs-haskell-mode-no-redefine-builtin.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Apply file deletion.

Change-Id: Ic7d11737af87995610ecf2c3178320901991423d
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou 8855e3017c
gnu: emacs-gptel: Update to 0.5.5. 
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.5.5.

Change-Id: I3d158ab5a5cd0277c210de706cc78a0561eca1d9
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou d7f6c26691
gnu: emacs-geiser: Update to 0.30. 
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.30.

Change-Id: I18d7c0132a13f8306de536c240edae8521ec9864
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou 3bb78ceb9d
gnu: emacs-emms-print-metadata: Update to 17. 
* gnu/packages/emacs-xyz.scm (emacs-emms-print-metadata): Update to 17.

Change-Id: I9d09cdf200cebab408f103ab33075a0b55973b68
 2024-01-02 00:43:07 +01:00
Nicolas Goaziou 1f500b96b5
gnu: emacs-eldev: Update to 1.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.8.1.

Change-Id: Iaaa7ac51401114706b7d4192e363c7a358d86f47
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou 3e19d2106b
gnu: emacs-el-patch: Update to 3.1. 
* gnu/packages/emacs-xyz.scm (emacs-el-patch): Update to 3.1.

Change-Id: Iba1df4faccb7c87052c48e5bed9f974092e9e3ea
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou ac0e32fca2
gnu: emacs-ebib: Update to 2.40.3. 
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.40.3.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: I7d37822ee5c41f5155ceb8e6b518a86dfcc9b5b3
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou 8853096fbb
gnu: emacs-docker: Update to 2.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-docker): Update to 2.3.1.

Change-Id: Ib463a11ce6295118a846692b480edc4464a80d8f
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou baea8607b6
gnu: emacs-denote: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-denote): Update to 2.2.0.

Change-Id: I0552023075748b859dff361794726b7955873d0d
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou 113cb79808
gnu: emacs-corfu: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 1.1.

Change-Id: Ic2737697cfe4f5005172e05ab5d7343eb9f0ca23
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou 9e02261d5e
gnu: emacs-consult-flycheck: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-consult-flycheck): Update to 1.0.

Change-Id: Ic52b212be42f59f70365d907d6b8992b7fc1101e
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou 116b63bbab
gnu: emacs-consult: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 1.1.

Change-Id: I303c64cef5419be1b8ff66a30ca9b7f8f44ccfa1
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou f1059e2c26
gnu: emacs-code-cells: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-code-cells): Update to 0.4.

Change-Id: Iac21fa3441fc85387ebc3d404205bd4f8716359f
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou 4103d685c0
gnu: emacs-clojure-mode: Update to 5.18.1. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.18.1.

Change-Id: I374f3ebca45fdce8ed84036fe999ace26d73c1ea
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou ea2eaaa46c
gnu: emacs-clj-refactor: Update to 3.11.2. 
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.11.2.

Change-Id: I338a2a8a172d5ea486f1d693b7a8c52cca3ec1f7
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou 8b41c305d8
gnu: emacs-cider: Update to 1.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.12.0.

Change-Id: Icc26d1b51125913009e425279d59db123d3722e1
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 3b8ff1d101
gnu: emacs-cape: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 1.1.

Change-Id: I7b2c1c415e62d4c13d0f3d5b946d93423dc08fb4
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 551e159467
gnu: emacs-async: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-async)[arguments]: Run tests.
[native-inputs]: Add EMACS-BUTTERCUP.

Change-Id: Ifa442644dbd259afb5584fbb4160a8b2346a6364
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 0f9beffa43
gnu: emacs-async: Update to 1.9.8. 
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.8.

Change-Id: I2b83724cee2f77d49417c104f7ab0bf299c671ea
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou 78c55428c3
gnu: emacs-buttercup: Update to 1.33. 
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.33.

Change-Id: Ie98b77b883b084886797680ef317b9668f1d0445
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 3320775063
gnu: emacs-beframe: Update to 1.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-beframe): Update to 1.0.0.

Change-Id: I1df7f004c24cc783869421f656a59610006fcf90
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 0306d83bed
gnu: emacs-apheleia: Update to 4.0. 
* gnu/packages/emacs-xyz.scm (emacs-apheleia): Update to 4.0.

Change-Id: I2d61a20e434400f8dbae7d33894ab6f6134c9630
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 30a7f0212a
gnu: emacs-vertico-posframe: Update to 0.7.5. 
* gnu/packages/emacs-xyz.scm (emacs-vertico-posframe): Update to 0.7.5.

Change-Id: Ifff04b43f978e0664cafca2ab8b8e5a8b826bca4
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou 9e195fa0ed
gnu: emacs-ebdb: Update to 0.8.20. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.20.

Change-Id: Ib3420c220beadc022bf3e65c8d904a0237f9dd18
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou 08c08b22b2
gnu: emacs-tramp: Update to 2.6.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.2.0.

Change-Id: Id3db704243d269b1b0979a4ed2fe36bd42f8e9bb
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou 4dc30915cc
gnu: emacs-kind-icon: Update to 0.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.2.1.

Change-Id: Id0fe5f72a3252cf3bf7348cd45db89da9e80b6ec
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou cab4cf27dc
gnu: emacs-eldoc: Update to 1.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-eldoc): Update to 1.15.0.

Change-Id: Icea7f7d60301892e9476b930ab19a85f41b29f4f
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou 6ca99feaf5
gnu: emacs-subed: Update to 1.2.11. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.11.

Change-Id: Ib3838ec91afdeefef267df49394ee4b1f75fa63a
 2024-01-02 00:43:00 +01:00
Nicolas Goaziou 2bfcb104b7
gnu: emacs-auctex: Update to 13.2.3. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.3.

Change-Id: Iabeb142f7fe1f5fcf925f788263c76eb0bbf1382
 2024-01-02 00:43:00 +01:00
Nicolas Goaziou 8f8fbb79ba
gnu: emacs-rec-mode: Update to 1.9.3. 
* gnu/packages/databases.scm (emacs-rec-mode): Update to 1.9.3.

Change-Id: I4268c08171b75442a6ba5b5da2887ae9764df98d
 2024-01-02 00:42:55 +01:00
Ricardo Wurmus ee0cf3b9ff
gnu: r-seurat-utils: Update to 2.5.0-1.c0374cc. 
* gnu/packages/bioinformatics.scm (r-seurat-utils): Update to 2.5.0-1.c0374cc.
[propagated-inputs]: Add r-databaselinke-r, r-enhancedvolcano, r-foreach,
r-job, r-magrittr, r-pheatmap, r-plotly, r-qs, r-rstudioapi, and r-tidyverse.

Change-Id: Iea2df8205357e7717c0adec00f6852794817d295
 2024-01-01 19:22:11 +01:00
Ricardo Wurmus 679560ffca
gnu: Add r-databaselinke-r. 
* gnu/packages/bioinformatics.scm (r-databaselinke-r): New variable.

Change-Id: I0cfcb5b6810b7afebbb9ccb02aafcce05507536c
 2024-01-01 19:21:59 +01:00
Ricardo Wurmus 510c2206e4
gnu: Add r-job. 
* gnu/packages/cran.scm (r-job): New variable.

Change-Id: I37a0870bd22d5bc2e700f843fca49f242a197440
 2024-01-01 19:21:37 +01:00
Ricardo Wurmus ff586211aa
gnu: Remove r-rmetasim. 
This package fails to build and has been archived on CRAN in 2021.

* gnu/packages/cran.scm (r-rmetasim): Remove variable.

Change-Id: I46a6c98d7e05faac6f83e29dfb21196a69bae56b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 00e6f55ddb
gnu: r-batchelor: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1.

Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus c8d1f64f40
gnu: r-genomeinfodb: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5.

Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus b0580a05be
gnu: r-seuratdisk: Update to 0.0.0.9021-1.877d4e1. 
* gnu/packages/cran.scm (r-seuratdisk): Update to 0.0.0.9021-1.877d4e1.

Change-Id: Iab1426efe5b792aacf19ab15e9d6d95be0bac38b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 2510849ec9
gnu: r-sparsearray: Update to 1.2.3. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3.

Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 31e882e4b1
gnu: r-genomicscores: Update to 2.14.3. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3.

Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus e15b95c126
gnu: r-metapod: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1.

Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 5673484cbc
gnu: r-biocneighbors: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1.

Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus a72c6ba19a
gnu: r-genomeinfodb: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4.

Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus 25d7dbd61c
gnu: Add r-inext. 
* gnu/packages/cran.scm (r-inext): New variable.

Change-Id: I6a87cfb57bfc8000520b98999cf260d2873f0b61
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus a2a8c4c13a
gnu: r-fpc: Update to 2.2-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-11.

Change-Id: Iebf343be3f9ce37fc9d740286b185e9c5c733efb
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 79fe5cbad0
gnu: r-cowplot: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.2.

Change-Id: Ie1688b1eb38e2c3ef04460cc4dd7c35179b6c48e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus df69fcac77
gnu: r-vipor: Update to 0.4.7. 
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.7.

Change-Id: I7a7442ae64d5a96a4ab20427ab5fb8bcdc2e51e2
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 8047e5328b
gnu: r-matrixstats: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.2.0.

Change-Id: I08ad75b3cdfefdeb9718086be75bb24153e117c9
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 2b2ad78597
gnu: r-segmented: Update to 2.0-1. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-1.

Change-Id: Ieb6dac2712af46fffd29959d9510153dd1f1fb5d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus cd1ea61bc0
gnu: r-brew: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-brew): Update to 1.0-10.

Change-Id: I8d3045477d8b329f0c626738a0cd8cf02862e34c
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 373c9b4efc
gnu: r-yaml: Update to 2.3.8. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.3.8.

Change-Id: I0b654db60d894e160c1ad8aa77000fc90ea649c3
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus da28470890
gnu: r-dbi: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.2.0.

Change-Id: I4384d37dd602b396fce736ff5c3b33e3da965233
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 7f7c2a4805
gnu: r-stringi: Update to 1.8.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.8.3.

Change-Id: Id600b65a926a233400870444ad3028690be3e92e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 5106fc899a
gnu: r-mgcv: Update to 1.9-1. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-1.

Change-Id: I9275750902b6e2d2bd1c7394363bdbc66043c4de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus b9e33a7fd4
gnu: r-ggh4x: Update to 0.2.7. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.7.

Change-Id: I0211d69404806922d6725f4936593573674d7e59
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus ba23ca977e
gnu: r-ragg: Update to 1.2.7. 
* gnu/packages/cran.scm (r-ragg): Update to 1.2.7.

Change-Id: I95f8c91f678181066745cad09295c4bcf24993de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 6b86c1f3db
gnu: r-mlr3learners: Update to 0.5.8. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.8.

Change-Id: Icae31b1458044eb224a19f06b46a45906a9c0f6d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 42c76e2f49
gnu: r-mlr3: Update to 0.17.1. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.17.1.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ida585a8ac45d8f78de787a243808788927ab765a
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus c5df00c1d1
gnu: r-projpred: Update to 2.8.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.8.0.

Change-Id: I01cfa407b53ccb02eea729319454f1f1f409d1d3
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus ae27de6649
gnu: r-rcdd: Update to 1.6. 
* gnu/packages/cran.scm (r-rcdd): Update to 1.6.

Change-Id: I6b76442004bb2fe3a6bb66c296562df295da2378
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 4b70228358
gnu: r-rsconnect: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rsconnect): Update to 1.2.0.

Change-Id: I8611d8a82b040f33292cdd81b5a278bdf500e956
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 9fb3c0057b
gnu: r-gghighlight: Update to 0.4.1. 
* gnu/packages/cran.scm (r-gghighlight): Update to 0.4.1.

Change-Id: Ic4067391a7713b59081f8a688704175e5bb024aa
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus b7e2c6b1c8
gnu: r-tidygraph: Update to 1.3.0. 
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.0.
[propagated-inputs]: Add r-lifecycle.

Change-Id: I99834ca5ee3ca760d2d5f16245118cd56c5e2b75
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 8b5768d509
gnu: r-terra: Update to 1.7-65. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-65.

Change-Id: I4fbb281b56600d51e59c863e5cfba00005db91de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus ea6b9e91ff
gnu: r-yulab-utils: Update to 0.1.2. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.2.

Change-Id: If6c7afd545aae041a8f9a541845ae12b2285314e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus 5709ad0046
gnu: r-haplo-stats: Update to 1.9.5. 
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.9.5.

Change-Id: Ic7e9c54242a0112de0b110e1b2c3c30288dd135a
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus eb50f38a6d
gnu: r-pegas: Update to 1.3. 
* gnu/packages/cran.scm (r-pegas): Update to 1.3.

Change-Id: If0c384c10f6203eaa8c4c15c17856a89351b6830
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus c774b097a8
gnu: r-sf: Update to 1.0-15. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-15.

Change-Id: I56c17f3d492664e080e5936a6bffad1f219d6231
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 8d01590dc2
gnu: r-s2: Update to 1.1.6. 
* gnu/packages/cran.scm (r-s2): Update to 1.1.6.

Change-Id: Ia4fec706e071401d0b2999bf94e1871898224bf4
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 4cad958bb3
gnu: r-lavaan: Update to 0.6-17. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-17.

Change-Id: I1b02e94154badf23becd6c95cca13ca8188f3168
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 6c2c12de93
gnu: r-tensora: Update to 0.36.2.1. 
* gnu/packages/cran.scm (r-tensora): Update to 0.36.2.1.

Change-Id: I9d8ae1b94fd43ceb68044b944335d341b84bed70
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 413f2553dc
gnu: r-future-apply: Update to 1.11.1. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.11.1.

Change-Id: Ib50aff8c551c3eb23b2c321761a04a4173e6e161
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 390a25d35c
gnu: r-future: Update to 1.33.1. 
* gnu/packages/cran.scm (r-future): Update to 1.33.1.

Change-Id: Ica13d8821eecd0b65fdbcb435293aa174781c93b
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 709cd4f42c
gnu: r-protviz: Update to 0.7.9. 
* gnu/packages/cran.scm (r-protviz): Update to 0.7.9.

Change-Id: I26fbd01cf6d4e5e50b3f4513193c14feea53a2b2
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 73010bea31
gnu: r-rnaturalearth: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rnaturalearth): Update to 1.0.1.
[propagated-inputs]: Remove r-sp.

Change-Id: Iceee064560f5719ccc2fb0d3377160c1bc914ac3
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 7681ab3d6d
gnu: r-tidytree: Update to 0.4.6. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.4.6.

Change-Id: Ia2dd2b6dd74f08b3377906aa3895d3a9437983ea
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 7e5c54a3ef
gnu: r-ggeffects: Update to 1.3.4. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.3.4.

Change-Id: I30d18c4aef8494dc49e0149f2ca5f7276c49b840
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus bf98450f01
gnu: r-tmb: Update to 1.9.10. 
* gnu/packages/cran.scm (r-tmb): Update to 1.9.10.

Change-Id: I698e60a2f79fb84452b02e9d78053621c5aa8398
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 24e08f8f1d
gnu: r-emmeans: Update to 1.9.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.9.0.

Change-Id: I078b8023106b085716444240b6e49edafce30592
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 4c7066b673
gnu: r-sandwich: Update to 3.1-0. 
* gnu/packages/cran.scm (r-sandwich): Update to 3.1-0.

Change-Id: Ibe33dfa1bcdb1c8fac8f46131042d4829ac12a9e
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 3e833ade11
gnu: r-quickjsr: Update to 1.0.9. 
* gnu/packages/cran.scm (r-quickjsr): Update to 1.0.9.

Change-Id: Ia7ce3d44b71d5d2493f2dcebbcdf55fa7a9cea98
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus a39df977c1
gnu: r-targets: Update to 1.4.0. 
* gnu/packages/cran.scm (r-targets): Update to 1.4.0.

Change-Id: Id2912083268d8021e99ce58b452b87505cd14f5e
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus b73b056abb
gnu: r-magick: Update to 2.8.2. 
* gnu/packages/cran.scm (r-magick): Update to 2.8.2.

Change-Id: Ibdba20895ea4934b047ec1cc463a7edd3e46806c
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 3039dbf453
gnu: r-mixsqp: Update to 0.3-54. 
* gnu/packages/cran.scm (r-mixsqp): Update to 0.3-54.

Change-Id: I92fa69bf895833f8ba6b68cbcc933c1e6cb170a0
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus a27e4eed2d
gnu: r-dofuture: Update to 1.0.1. 
* gnu/packages/cran.scm (r-dofuture): Update to 1.0.1.

Change-Id: If6bb0ca6c3d9bc788a7166dd09b8a9e908d75870
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 7faf9df0d2
gnu: r-seriation: Update to 1.5.4. 
* gnu/packages/cran.scm (r-seriation): Update to 1.5.4.

Change-Id: I33dd04e9ef572e0731634149da3b0af0ee66929a
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 53de8edf15
gnu: r-timeseries: Update to 4032.108. 
* gnu/packages/cran.scm (r-timeseries): Update to 4032.108.

Change-Id: I9fd9ae02405dd4c25beb4da7876ac9ff1f13278c
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 249148231f
gnu: r-ggridges: Update to 0.5.5. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.5.

Change-Id: Ife748b75a0132b35020bfec0d58851e529aa2ebe
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 18c921aedb
gnu: r-ucminf: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ucminf): Update to 1.2.1.

Change-Id: I8008943c653e2ce1c998353aeef383f5a79332b1
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 2a48f00a2d
gnu: r-recipes: Update to 1.0.9. 
* gnu/packages/cran.scm (r-recipes): Update to 1.0.9.

Change-Id: Ia73c9091f6d45f1690a4bfcae014e9571b317182
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus cb71656a2a
gnu: r-psych: Update to 2.3.12. 
* gnu/packages/cran.scm (r-psych): Update to 2.3.12.

Change-Id: I7bb3783e4df94655ab4d71bc6e14303691e39500
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 318dcc40e0
gnu: r-timedate: Update to 4032.109. 
* gnu/packages/cran.scm (r-timedate): Update to 4032.109.

Change-Id: Ib9718ee4e9c35182e892c23fa5b930ab71489acd
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 1cef2df3ad
gnu: r-bindrcpp: Update to 0.2.3. 
* gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.3.

Change-Id: I6cde68e383bb776bfe18fe82cb3075a1ceb0c4f4
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 6ed18e6552
gnu: r-gensa: Update to 1.1.12. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.12.

Change-Id: I5be3cff03ad8edfc7f635a349f85570f9c4dfd2e
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus dcb8b43e41
gnu: r-maps: Update to 3.4.2. 
* gnu/packages/cran.scm (r-maps): Update to 3.4.2.

Change-Id: Id5063b752e807e6bbba40e52894c1a92917f8799
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus bbf076f5b2
gnu: r-servr: Update to 0.28. 
* gnu/packages/cran.scm (r-servr): Update to 0.28.

Change-Id: If6af9c2b2902039434ca858853de01bd59975ba5
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 27f965c7fa
gnu: r-rticles: Update to 0.26. 
* gnu/packages/cran.scm (r-rticles): Update to 0.26.

Change-Id: I5c2c25477990a87c3b1cec7f7830cddb862d2b6a
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 59970a9c57
gnu: r-datawizard: Update to 0.9.1. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.9.1.

Change-Id: I91de1685b889eb516204499c6e21c0fb1475ea13
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 6d564299c6
gnu: r-aod: Update to 1.3.3. 
* gnu/packages/cran.scm (r-aod): Update to 1.3.3.

Change-Id: Ifcf95c006c6adc76197cba6ab8dbb8234bf5c1cd
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 4ea4101d66
gnu: r-ggvenndiagram: Update to 1.4.9. 
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.4.9.
[propagated-inputs]: Add r-aplot, r-forcats, and r-tidyr; remove r-magrittr,
r-plotly, r-purrr, r-rvenn, r-sf, and r-yulab-utils.

Change-Id: I7e1f701e893aff8d75fa9de46d4f451cfa98f820
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 2b08c05bff
gnu: r-diversitree: Update to 0.10-0. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.10-0.
[native-inputs]: Remove gfortran.

Change-Id: Ie54ba8374d85b66d712d2c50d7ad1f05edc01b75
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 8c7904e424
gnu: r-radiant-data: Update to 1.6.3. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.3.
[source]: Do not delete help files, because they are now under CC-BY-SA.
[arguments]: Simplify by using minify-build-system.

Change-Id: Ic4a2bdd3a8df9f27d703505eaeba080e28982c80
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus ffa5bec664
gnu: r-shiny: Update to 1.8.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.8.0.
[arguments]: Do not use quasiquote for argument list.

Change-Id: Id36b3168a13a254e26cda30d7eaa45874d40c4e3
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 54c2ed9e2e
gnu: r-torch: Update to 0.12.0. 
* gnu/packages/cran.scm (r-torch): Update to 0.12.0.
[propagated-inputs]: Add r-jsonlite and r-safetensors.

Change-Id: I7d35b494640159975485846416e03630c7cd451f
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 5a5a5cf31d
gnu: liblantern: Update to 0.11.0-1.4d83bd0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.11.0-1.4d83bd0.

Change-Id: I04ac3d64df8ec3b4ba628886640020a24361f4e3
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 1e5faccecd
gnu: python-pytorch-for-r-torch: Update to 2.0.1. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Update to 2.0.1.
* gnu/packages/patches/python-pytorch2-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I97551d543e50f6e511aa0529c097d156cf3f96de
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 6055bb3163
gnu: Add onnx-optimizer-for-torch2. 
* gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): New variable.

Change-Id: Icf48cba3f0a30f171b6f01cd033dd135a078ba1a
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 43c92f323e
gnu: Add onnx-for-torch2. 
* gnu/packages/machine-learning.scm (onnx-for-torch2): New variable.
* gnu/packages/patches/onnx-1.13.1-use-system-googletest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I8a46b9a8096a33bcf949bc4f5d497e22902ab301
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 7720430678
gnu: python-protobuf: Update to 3.20.2. 
* gnu/packages/protobuf.scm (python-protobuf): Update to 3.20.2.

Change-Id: Ic7a0f199f522ebf1e62e9179b4a7e4223594299c
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 745edcc4c0
gnu: Add r-safetensors. 
* gnu/packages/cran.scm (r-safetensors): New variable.

Change-Id: I40bcee87cdbba9776f3448a2567f94ebb1e652b9
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 5654f61541
gnu: Add xnnpack-for-torch2. 
* gnu/packages/machine-learning.scm (xnnpack-for-torch2): New variable.
* gnu/packages/patches/xnnpack-for-torch2-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I1c35f5fbd064fcc6732b924d7cafaa1a7d03ce04
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 71b8ed4a28
gnu: r-rmpi: Update to 0.7-2. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.7-2.
[properties]: Specify updater-extra-inputs.
[arguments]: Use G-expression.

Change-Id: Ic15015bf181ae1e7689b7c81a3bf11258e2df946
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 4ee04aa632
gnu: r-littler: Update to 0.3.19. 
* gnu/packages/cran.scm (r-littler): Update to 0.3.19.
[properties]: Specify updater-extra-inputs.
[native-inputs]: Remove pkg-config.

Change-Id: Ic152e560fa9f5609aebc8c4a68a60265b7626bcb
 2024-01-01 14:35:12 +01:00
Julien Lepiller 9bfb7db8f6
gnu. josm. Update to 18907. 
* gnu/packages/geo.scm (josm): Update to 18907.

Change-Id: Ica61eabb49489bc5716b2b0bd029bbffcb7f84d3
 2024-01-01 10:37:03 +01:00
Julien Lepiller 8ba7a4a042
gnu: Add java-jakarta-annotations-api. 
* gnu/packages/java.scm (java-jakarta-annotations-api): New variable.

Change-Id: I374d1be6f1c509c9c6391e0551de5362eae13357
 2024-01-01 10:36:51 +01:00
Jean-Pierre De Jesus DIAZ 3bb1390171
gnu: Add neovim-coqtail. 
* gnu/packages/vim.scm (neovim-coqtail): New variable.

Change-Id: I431571925da02788410fc8bf3b1e1aea93bcb1bb
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:51:06 +02:00
Jean-Pierre De Jesus DIAZ 6abff4eafa
gnu: vim-coqtail: Allow using neovim for tests. 
* gnu/packages/vim.scm (vim-coqtail): Allow using neovim for tests.

Change-Id: I114b07dd9cf525a5571a37f51b2e6b2a57d5be46
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:49:17 +02:00
Jean-Pierre De Jesus DIAZ cb651129a3
gnu: vim-coqtail: Move vim-full to arguments. 
* gnu/packages/vim.scm (vim-coqtail)[arguments]: Set #:vim to use
vim-full.  Adjust custom 'check phase accordingly.
[native-inputs]: Remove vim-full.  Remove input labels.

Change-Id: I20cc1e0772727f8fc7db70b42151432fb6349fc7
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:46:44 +02:00
Jean-Pierre De Jesus DIAZ b34d0ceb85
gnu: Add neovim-vader. 
* gnu/packages/vim.scm (neovim-vader): New variable.

Change-Id: Ib507c2086c31a42088f3f433b57ac1e345e27113
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:45:51 +02:00
Jean-Pierre De Jesus DIAZ def924439d
gnu: vim-vader: Allow using neovim for tests. 
* gnu/packages/vim.scm (vim-vader): Allow using neovim for tests.

Change-Id: Id5b4423f24fdd42814b0a0e3fab801ec871611f7
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:44:20 +02:00
Efraim Flashner b20b624b02
gnu: gccgo-12: Fix building with 1 core. 
* gnu/packages/gcc.scm (make-gccgo)[arguments]: When building gccgo-12
or higher add a phase to build libbacktrace before libgo.

Change-Id: I9bb225b58ffa439f9461e4126f51ab453683efbe
 2024-01-01 08:35:53 +02:00
John Kehayias 19f5302d13
gnu: go-1.21: Update to 1.21.5. 
* gnu/packages/golang.scm (go-1.21): Update to 1.21.5.

Change-Id: Ie7d275e698c3884c93d7618d99859d6019fa8893
 2023-12-31 15:37:16 -05:00
John Kehayias c314115dd0
gnu: Add the Go standard library 1.21. 
* gnu/packages/golang.scm (go-std-1.21): New variable.

Co-authored-by: VÖRÖSKŐI András <voroskoi@gmail.com>
Change-Id: I8f26611fc5a9398d915e74d3e55a0f0310b27133
 2023-12-31 15:35:17 -05:00
Katherine Cox-Buday 37c33eb0d4
gnu: Add go-1.21. 
* gnu/packages/golang.scm (go-1.21): New variable.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: Ifa9fa61ed1ae49831621bdbabd530d29f6fa164a
 2023-12-31 15:24:18 -05:00
Timotej Lazar 1709f1bc92
gnu: jq: Update to 1.7.1 [security fixes]. 
Fixes CVE-2023-50246 and CVE-2023-50268.

* gnu/packages/web.scm (jq): Update to 1.7.1.

Change-Id: I21999732036c76faea711e0484fa8c0d75d8736f
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
 2023-12-31 15:10:27 -05:00
Efraim Flashner b7466215cd
gnu: go-github-com-stretchr-testify-bootstrap: Move to golang-check.scm 
* gnu/packages/golang.scm (go-github-com-stretchr-testify-bootstrap):
Move from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: Iaa32e1c17a0e5a372613302e5e7fbf8de4d9572a
 2023-12-31 14:38:44 +02:00
Kaelyn Takata 94b5db7bbc
gnu: Remove dxvk. 
This package has been broken for some time, and upstream removed support for
building with winelib in version 1.7 released in May 2020.

* gnu/packages/wine.scm (dxvk): Delete variable.

Change-Id: I393853aa6e0c9257907549f346a36a1fe37a61a0
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-31 12:31:18 +01:00
Kaelyn Takata 7330b71256
gnu: wine-staging: Update to 8.18. 
* gnu/packages/wine.scm (wine-staging): Update to 8.18.
(wine-staging-patchset-data)[#:builder]: Adjust accordingly.
[native-inputs]: Drop bash.
(wine-staging)[native-inputs]: Add python-3.
[#:phases]<apply-wine-staging-patches>: Adjust path to patch script.
(wine64-staging)[#:phases]<apply-wine-staging-patches>: Likewise.

Change-Id: Ie71ed785c1e821b1d1752e46b3da11809b4331e5
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-31 12:31:18 +01:00
Adam Faiz a98b4abe76
gnu: Add devours. 
* gnu/packages/games.scm (devours): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-31 12:31:18 +01:00
Adam Faiz c95ad4e38d
gnu: Add informlib. 
* gnu/packages/game-development.scm (informlib): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-31 12:31:18 +01:00
Adam Faiz c3d8a7242a
gnu: Add inform. 
* gnu/packages/game-development.scm (inform): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-31 12:31:17 +01:00
Maxim Cournoyer 2a242e8637
gnu: Remove emacs-mu4e-conversation. 
* gnu/packages/emacs-xyz.scm (emacs-mu4e-conversation): Delete variable.

Reported-by: Cayetano Santos <csantosb@inventati.org>
Change-Id: I45126ecabdfc475e5cd19a342c78e7e98e91fe54
 2023-12-31 01:01:41 -05:00
Hilton Chain 9d148d08be
gnu: font-lxgw-wenkai: Update to 1.315. 
* gnu/packages/fonts.scm (font-lxgw-wenkai): Update to 1.315.

Change-Id: I28d0526af7868a50a378fcbd5bd2d11d27b02aa1
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-12-31 11:05:38 +08:00
Vagrant Cascadian 111d010921
gnu: diffoscope: Update to 253. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 253.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
Change-Id: I70d0130c8cc3cdea03546969a0e87eb4c637fc5b
 2023-12-31 11:05:38 +08:00
Greg Hogan f36bcd14c6
gnu: shflags: Update to 1.3.0. 
* gnu/packages/version-control.scm (shflags): Update to 1.3.0.

Change-Id: I8463a45d4a2526d971441292e7ec94c9e0710521
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-12-31 11:05:38 +08:00
Bruno Victal 7310d4fcc3
gnu: mympd: Update to 13.0.6. 
* gnu/packages/mpd.scm (mympd): Update to 13.0.6.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
Change-Id: Iaaf3985ce4c1399bb0709f2e6702df2a232a1e48
 2023-12-31 11:05:38 +08:00
Kaelyn Takata 976fe648df
gnu: glfw: Update to 3.3.9. 
* gnu/packages/gl.scm (glfw): Update to 3.3.9.

Change-Id: Ide5ec168e97d431dba007bd6095635dab83b87c4
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-12-31 11:05:38 +08:00
Julien Lepiller b8aea26c4f
gnu: Remove ocaml-markup0.8.0. 
This is only used for ocaml4.07.

* gnu/packages/ocaml.scm (ocaml-markup0.8.0): Remove variable.
(ocaml-markup)[properties]: Remove variant.

Change-Id: Ib6444d67f5b8fba13e8ca7bca444ed9e29efa7de
 2023-12-30 22:14:45 +01:00
Julien Lepiller 4a7b588923
gnu: Remove ocaml4.07-sexplib0. 
* gnu/packages/ocaml.scm (ocaml4.07-sexplib0): Remove variable.
(ocaml-sexplib0)[properties]: Remove variant.

Change-Id: Ie370668adc446fc4c2b04206a6657380e5e09790
 2023-12-30 22:13:57 +01:00
Julien Lepiller e22e54aa04
gnu: Remove ocaml4.07-lwt. 
* gnu/packages/ocaml.scm (ocaml4.07-lwt): Remove variable.
(ocaml-lwt)[properties]: Remove variant.

Change-Id: I3db8b1656ead127a9081d843a3ad387706bcc982
 2023-12-30 22:13:52 +01:00
Julien Lepiller b1b2eb4040
gnu: Remove ocaml4.07-base. 
* gnu/packages/ocaml.scm (ocaml4.07-base): Remove variable.
(ocaml-base)[properties]: Remove variant.

Change-Id: I07813a2865b3bb42e0adf75e74bfebe372f1e789
 2023-12-30 22:13:48 +01:00
Julien Lepiller cad3698635
gnu: Remove ocaml4.07-stdio. 
* gnu/packages/ocaml.scm (ocaml4.07-stdio): Remove variable.
(ocaml-stdio)[properties]: Remove variant.

Change-Id: I5a664b5130408eba41266f36cfc03641e2a8fd9d
 2023-12-30 22:13:42 +01:00
Julien Lepiller 0806c87cb2
gnu: Remove ocaml4.07-re. 
* gnu/packages/ocaml.scm (ocaml4.07-re): Remove variable.
(ocaml-re)[properties]: Remove variant.

Change-Id: Ib3cf5188737579908e945bd49617b6d717da4250
 2023-12-30 22:12:55 +01:00
Julien Lepiller aca25d415b
gnu: Remove ocaml4.07-compiler-libs. 
* gnu/packages/ocaml.scm (ocaml4.07-compiler-libs): Remove variable.
(ocaml-compiler-libs)[properties]: Remove variant.

Change-Id: Idf54330537c2ff9317a4650df06ece7bd980b1da
 2023-12-30 22:12:52 +01:00
Julien Lepiller 29a82bf5fc
gnu: Remove ocaml4.07-cmdliner. 
* gnu/packages/ocaml.scm (ocaml4.07-cmdliner): Remove variable.
(ocaml-cmdliner)[properties]: Remove variant.

Change-Id: I83cd2ca87356a103201b3c1ffb1a8de4b081a9da
 2023-12-30 22:12:47 +01:00
Julien Lepiller 3936d07da2
gnu: Remove ocaml4.07-lablgtk. 
* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): Remove variable.
(lablgtk)[properties]: Remove variant.

Change-Id: I931b9316834d109fe291dbb8d1217690e129b9ee
 2023-12-30 22:12:44 +01:00
Julien Lepiller ad5a1abec8
gnu: Remove ocaml4.07-uuidm. 
* gnu/packages/ocaml.scm (ocaml4.07-uuidm): Remove variable.
(ocaml-uuidm)[properties]: Remove variant.

Change-Id: I8ff5a145eb1057f8aff869f865c562134c9afc9d
 2023-12-30 22:12:35 +01:00
Julien Lepiller 3406364250
gnu: Remove ocaml4.07-ppxlib. 
* gnu/packages/ocaml.scm (ocaml4.07-ppxlib): Remove variable.
(ocaml-ppxlib)[properties]: Remove variant.

Change-Id: I6b19e7751d1c21549d261281ae400f90c8d88c6c
 2023-12-30 22:12:29 +01:00