94617bddb0
gnu: libbytesize: Update to 1.4.
...
* gnu/packages/c.scm (libbytesize): Update to 1.4.
[source]: Parametrise.
2018-10-24 04:56:23 +02:00
50f5aa4b9e
gnu: xmlsec: Update to 1.2.27.
...
* gnu/packages/xml.scm (xmlsec): Update to 1.2.27.
[source]: Don't rely on NAME.
2018-10-24 04:56:23 +02:00
0ba0ab814a
gnu: Add wavemon.
...
* gnu/packages/hardware.scm (wavemon): New public variable.
2018-10-24 03:58:20 +02:00
d78587edca
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
...
Includes fixes for CVE-2018-12389, CVE-2018-12390, CVE-2018-12391,
CVE-2018-12392, CVE-2018-12393, CVE-2018-12395, CVE-2018-12396, and
CVE-2018-12397.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected changesets from the
upstream mozilla-esr60 repository. Relabel some previously existing patches
to reflect CVE assignments.
2018-10-23 19:41:47 -04:00
b4237a6ec0
gnu: emacs-nov-el: Update to 0.2.6.
...
* gnu/packages/emacs.scm (emacs-nov-el): Update to 0.2.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
12995856e2
gnu: libssh: Fetch the source code more efficiently.
...
* gnu/packages/ssh.scm (libssh)[source]: Use the git:// protocol.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
b55697fbb4
gnu: Add r-aspi.
...
* gnu/packages/cran.scm (r-aspi): New variable.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-10-23 23:20:13 +02:00
d89872f955
gnu: sbcl-parse-float: Remove comment about license.
...
* gnu/packages/lisp.scm (sbcl-parse-float): The license really is public domain.
2018-10-23 20:36:58 +02:00
bf076d8ba6
gnu: Add libstatgrab.
...
* gnu/packages/lxqt.scm (libstatgrab): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:39:09 +08:00
64fac507dd
gnu: Add libdbusmenu-qt.
...
* gnu/packages/lxqt.scm (libdbusmenu-qt): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:23:49 +08:00
d58aefdf06
gnu: lxqt.scm: Sort packages alphabetically.
...
* gnu/packages/lxqt.scm: Sort packages alphabetically.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:37:48 +08:00
088096aa0e
gnu: lxqt-build-tools: Update download URL and home page URL.
...
* gnu/packages/lxqt.scm (lxqt-build-tools)
[source]: Update download URL to the 'lxqt' repository.
[home-page]: Use HTTPS.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:33:45 +08:00
70c488f8dd
gnu: lxqt-session: Update to 0.13.0.
...
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.13.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:29:55 +08:00
f0ac761f95
gnu: grammalecte: Update home page.
...
* gnu/packages/dictionaries.scm (grammalecte)[home-page]: Update URL.
2018-10-23 09:59:16 +02:00
a89f731b15
gnu: Xiph: Use HTTPS URLs.
...
* gnu/packages/xiph.scm (libogg, libvorbis, libtheora, speex, speexdsp, ao,
flac, libkate, vorbis-tools, opus-tools opusfile, icecast, libshout)[source]:
Use HTTPS URLs.
(icecast)[home-page]: Use HTTPS URL.
2018-10-23 00:18:17 -04:00
a640492f6d
gnu: Opus: Update to 1.3.
...
* gnu/packages/xiph.scm (opus): Update to 1.3.
2018-10-23 00:18:17 -04:00
d0ff383ed8
gnu: opus-tools: Update to 0.2.
...
* gnu/packages/xiph.scm (opus-tools): Update to 0.2.
[native-inputs]: Add pkg-config.
[inputs]: Add libopusenc and opusfile. Remove libogg and opus.
2018-10-23 00:18:17 -04:00
844b3272da
gnu: opusfile: Propagate dependencies required in pkg-config.
...
* gnu/packages/xiph.scm (opusfile)[inputs]: Move libogg and openssl to
propagated-inputs.
2018-10-23 00:18:17 -04:00
ce08d54c35
gnu: Add libopusenc.
...
* gnu/packages/xiph.scm (libopusenc): New variable.
2018-10-23 00:18:13 -04:00
d6a9c4ecfb
gnu: unbound: Update to 1.8.1.
...
* gnu/packages/dns.scm (unbound): Update to 1.8.1.
2018-10-23 04:18:50 +02:00
661da25133
gnu: Remove duplicate import from (gnu packages messaging).
...
* gnu/packages/messaging.scm (define-module): Remove duplicate module
import. Order the remainder alphabetically.
2018-10-23 04:18:40 +02:00
ee5c83533d
gnu: cppcheck: Update to 1.85.
...
* gnu/packages/check.scm (cppcheck): Update to 1.85.
2018-10-23 03:14:31 +02:00
3891c38346
gnu: bs1770gain: Update to 0.5.1.
...
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.1.
2018-10-23 03:14:30 +02:00
2820e31590
gnu: zstd: Update to 1.3.7.
...
* gnu/packages/compression.scm (zstd): Update to 1.3.7.
2018-10-23 03:14:30 +02:00
63abd1e2a3
gnu: python-pymongo: Update to 3.7.2.
...
* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
2018-10-22 23:01:19 +02:00
47d7c10387
gnu: python-sure: Update to 1.4.11.
...
* gnu/packages/python.scm (python-sure): Update to 1.4.11.
2018-10-22 23:01:19 +02:00
9b9aaa57e3
gnu: python-markdown: Update to 3.0.1.
...
* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
2018-10-22 23:01:19 +02:00
1b50df7d5b
gnu: python-markdown: Update home page.
...
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
2018-10-22 23:01:19 +02:00
cb61baf0e7
gnu: python-m2crypto: Update to 0.30.1.
...
* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
2018-10-22 23:01:19 +02:00
e810de3e68
gnu: python-m2crypto: python-typing is only needed for python2.
...
* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
2018-10-22 23:01:19 +02:00
90fb136ff7
gnu: xorg-server: Update to 1.20.2.
...
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
2018-10-22 23:01:19 +02:00
4350cacdf7
gnu: xf86-input-libinput: Update to 0.28.1.
...
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
2018-10-22 23:01:18 +02:00
3743e117a6
gnu: libmd: Update to 1.0.1.
...
* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
2018-10-22 23:01:18 +02:00
f38eedd518
gnu: samba: Update to 4.8.6.
...
* gnu/packages/samba.scm (samba): Update to 4.8.6.
2018-10-22 23:01:18 +02:00
3ad0a35890
gnu: Add GN.
...
* gnu/packages/build-tools.scm (gn): New public variable.
2018-10-22 23:01:18 +02:00
f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1.
...
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
2018-10-22 23:01:18 +02:00
b45688313b
gnu: python-mistune: Update to 0.8.4.
...
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
2018-10-22 23:01:18 +02:00
9861bcd182
gnu: liblxqt: Update to 0.13.0.
...
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
50401c2a68
gnu: libqtxdg: Update to 3.2.0.
...
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
51f4e36cb9
gnu: Add emacs-scribble-mode.
...
* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
2018-10-22 09:59:42 -04:00
3a352a4405
gnu: snap: Update to 4.2.2.2.
...
* gnu/packages/education.scm (snap): Update to 4.2.2.2. Update source URL.
2018-10-22 15:56:38 +02:00
09aa3d063a
gnu: Add r-ruvseq.
...
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
2018-10-22 13:00:24 +02:00
318ec0a896
gnu: livemedia-utils: Update to 2018.10.17 [fixes CVE-2018-4013].
...
* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
2018-10-22 03:37:53 -04:00
69c69c2d8e
gnu: libmpdclient: Update to 2.16.
...
* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
2018-10-21 23:55:28 -04:00
dc3dfa131f
gnu: knot: Update to 2.7.3.
...
* gnu/packages/dns.scm (knot): Update to 2.7.3.
2018-10-22 00:40:05 +02:00
df71447e99
gnu: OpenSSH: Update to 7.9p1.
...
* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
2018-10-21 18:33:58 -04:00
ff598353c0
gnu: light: Update to 1.2.
...
* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-21 23:54:46 +02:00
16d212510a
gnu: Add python-ilinkedlist.
...
* gnu/packages/python.scm (python-ilinkedlist): New variable.
2018-10-21 23:54:46 +02:00
aff38cb199
install: Make /var/guix/…/guix-profile a relative symlink.
...
* gnu/build/install.scm (populate-single-profile-directory): Make
/var/guix/profiles/per-user/root/guix-profile a relative symlink.
2018-10-21 23:54:46 +02:00
f8ee22fc8b
gnu: flexbar: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
2018-10-21 23:06:47 +02:00
4d93a9a36c
gnu: seqan: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
2018-10-21 23:06:47 +02:00
4b8f4536ce
gnu: khmer: Update to 2.1.2.
...
* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
2018-10-21 23:06:47 +02:00
50e33c3a8c
gnu: python-screed: Update to 1.0.
...
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
2018-10-21 23:06:47 +02:00
0db75f7a79
gnu: fasttree: Use INVOKE.
...
* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
2018-10-21 23:06:46 +02:00
38622ccd14
gnu: express-beta-diversity: Update to 1.0.8.
...
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
2018-10-21 23:06:46 +02:00
c96ca68f31
gnu: edirect: Update to 10.2.20181018.
...
* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
2018-10-21 23:06:46 +02:00
949fa34b84
gnu: eigensoft: Update to 7.2.1.
...
* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
2018-10-21 23:06:46 +02:00
5748fe5fcc
gnu: discrover: Fetch from git.
...
* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
4348a059e5
gnu: Add texlive-latex-examplep.
...
* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
2018-10-21 23:06:46 +02:00
f50f343e0d
gnu: Add texlive-latex-verbatimbox.
...
* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
2018-10-21 23:06:46 +02:00
1d0669f4b4
gnu: Add texlive-latex-readarray.
...
* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
2018-10-21 23:06:46 +02:00
893fbf1285
gnu: Add texlive-generic-listofitems.
...
* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
2018-10-21 23:06:46 +02:00
49b2e86adf
gnu: Add texlive-latex-doi.
...
* gnu/packages/tex.scm (texlive-latex-doi): New variable.
2018-10-21 23:06:46 +02:00
1c06399358
gnu: diamond: Fetch from git.
...
* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
7a1e62ca67
gnu: delly: Update to 0.7.9.
...
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:46 +02:00
4d494a4fa3
gnu: deeptools: Update to 3.1.3.
...
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
2018-10-21 23:06:46 +02:00
e6b65bd219
gnu: eolie: Update to 0.9.45.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
2018-10-21 23:06:46 +02:00
42643fc24d
gnu: python-dendropy: Fetch from git.
...
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
6b31040ae6
gnu: python-py2bit: Update to 0.3.0.
...
* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
2018-10-21 23:06:45 +02:00
6b7260bad1
gnu: cutadapt: Update to 1.18.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
2018-10-21 23:06:45 +02:00
a5b0038cbd
gnu: Add python-dnaio.
...
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
2018-10-21 23:06:45 +02:00
7321920cd3
gnu: crossmap: Update to 0.2.9.
...
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
8640f9ec91
gnu: python-twobitreader: Update to 3.1.6.
...
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
f5cec0068a
gnu: Add python-bx-python.
...
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
2018-10-21 23:06:45 +02:00
2ba2d62c69
gnu: python2-bx-python: Update to 0.8.2.
...
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
2018-10-21 23:06:45 +02:00
1d18ee6dfd
gnu: bwa-pssm: Fetch from git.
...
* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
9a6808e0c0
gnu: tophat: Update to 2.1.1.
...
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
f7618bf18e
gnu: linux-libre: Update to 4.18.16.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
2018-10-21 14:59:30 -04:00
668834cae0
gnu: linux-libre@4.14: Update to 4.14.78.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
2018-10-21 14:58:03 -04:00
c4a7a51292
gnu: linux-libre@4.9: Update to 4.9.135.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
2018-10-21 14:57:24 -04:00
9ab6c680ba
gnu: linux-libre@4.4: Update to 4.4.162.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
2018-10-21 14:56:44 -04:00
673364cd3a
gnu: Add emacs-slime-repl-ansi-color.
...
* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
2018-10-21 19:49:10 +02:00
3a69b59332
gnu: rng-tools: Update to 6.6.
...
* gnu/packages/linux.scm (rng-tools): Update to 6.6.
2018-10-21 17:57:01 +02:00
9b6dc31b6d
gnu: fluidsynth: Update to 2.0.1.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
2018-10-21 17:57:01 +02:00
b6b3e5120a
gnu: libgxps: Update to 0.3.0.
...
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-10-21 17:57:01 +02:00
c8d62d936e
gnu: libgxps: Propagate required inputs.
...
* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here. New field.
2018-10-21 17:57:01 +02:00
920de4286a
gnu: re2: Update to 2018-10-01.
...
* gnu/packages/regex.scm (re2): Update to 2018-10-01.
2018-10-21 17:57:01 +02:00
ab5e4be647
gnu: libgphoto2: Update to 2.5.19.
...
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
2018-10-21 17:57:01 +02:00
8941b4ab3d
gnu: appstream-glib: Update to 0.7.14.
...
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
2018-10-21 17:57:00 +02:00
8eadc55202
gnu: openal: Update to 1.19.1.
...
* gnu/packages/audio.scm (openal): Update to 1.19.1.
2018-10-21 17:57:00 +02:00
2c17bd7b29
gnu: kodi: Disable version checker.
...
Fixes bug#32997.
* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
2018-10-21 16:39:26 +03:00
617c478506
gnu: python2-dendropy: Disable failing test.
...
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
2018-10-21 22:31:56 +10:00
21c837405a
gnu: bowtie: Update to 2.3.4.3.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3.
[source]: Fetch from git.
[inputs]: Replace python-2 with python-wrapper; move perl, perl-clone,
perl-test-deep, and perl-test-simple from here...
[native-inputs]: ...to here.
[arguments]: Simplify check phase.
2018-10-20 23:37:34 +02:00
f45093429c
gnu: blast+: Use INVOKE and return #T unconditionally.
...
* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and
return #T unconditionally.
2018-10-20 23:37:34 +02:00
f8b697a385
gnu: bedops: Update to 2.4.35.
...
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
2018-10-20 23:37:34 +02:00
337d72fb44
gnu: bedops: Use INVOKE.
...
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
2018-10-20 23:37:34 +02:00
c793f4d8fb
gnu: bamm: Fetch from git and use INVOKE.
...
* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
2018-10-20 23:37:34 +02:00
95758e2faf
gnu: aragorn: Use invoke and simplify.
...
* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
2018-10-20 23:37:33 +02:00
8b4102b903
gnu: clipper: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
2018-10-20 23:37:33 +02:00
895cf8278a
gnu: python-pybedtools: Update to 0.7.10.
...
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
2018-10-20 23:37:33 +02:00
129363b762
gnu: Add bedtools-2.26.
...
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
2018-10-20 23:37:28 +02:00
bfa47f14b1
gnu: cataclysm-dda: Update snapshot.
...
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
2018-10-20 14:38:45 -04:00
82cbe4e046
gnu: maxima: Update to 5.42.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-20 14:38:45 -04:00
227da3a4c5
gnu: python-glances: Update to 3.0.2.
...
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
2018-10-20 18:24:23 +03:00
67fd64a490
gnu: emacs-hy-mode: Update to 1.0.3.
...
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
2018-10-20 17:48:58 +03:00
e661dca879
gnu: emacs-erc-hl-nicks: Update to 1.3.3.
...
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
2018-10-20 17:48:49 +03:00
91c5e6a69d
gnu: emacs-yasnippet: Update to 0.13.0.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
2018-10-20 17:48:36 +03:00
292d637b9e
gnu: emacs-nginx-mode: Update to 1.1.9.
...
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
2018-10-20 17:48:28 +03:00
2f1dacc281
gnu: emacs-rainbow-mode: Update to 1.0.1.
...
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
2018-10-20 17:48:07 +03:00
45dcdf5349
gnu: emacs-smart-mode-line: Update to 2.12.0.
...
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
2018-10-20 17:47:46 +03:00
9137596179
gnu: emacs-fill-column-indicator: Update to 1.89.
...
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
2018-10-20 17:47:13 +03:00
83246854f3
gnu: emacs-ggtags: Update to 0.8.13.
...
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
2018-10-20 17:46:43 +03:00
42f9ebdc77
gnu: emacs-which-key: Update to 3.3.0.
...
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
2018-10-20 17:37:32 +03:00
0d3f170864
gnu: Add soundconverter.
...
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-20 12:24:50 +01:00
b5a927b3ba
gnu: Add enchive.
...
* gnu/packages/crypto.scm (enchive): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:41 +02:00
64791eb7e1
services: ntp: Document 'ntp-service-type' and 'ntp-configuration'.
...
* gnu/services/networking.scm (<ntp-configuration>)[servers]: Add
default value.
(ntp-service-type)[default-value]: New field.
(ntp-service): Mark as deprecated.
* gnu/services/desktop.scm (%desktop-services): Use (service
ntp-service-type) instead of calling 'ntp-service'.
* doc/guix.texi (Networking Services): Document 'ntp-service-type' and
'ntp-configuration'.
2018-10-19 23:39:41 +02:00
bc83b2e22f
gnu: Add i3blocks.
...
* gnu/packages/wm.scm (i3blocks): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:37 +02:00
cdb84eb0e6
gnu: qsynth: Update to 0.5.3.
...
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
2018-10-19 21:59:28 +02:00
0ee6692a63
gnu: sbcl-slime-swank: Remove reference to unbound variable.
...
Fixes a regression introduced in commit
c4d4ae1e16
2018-10-19 18:34:07 +02:00
b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0.
...
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
4680fef705
gnu: Add wiredtiger 3.1.0
...
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
wiredtiger
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
3bd45f5c80
gnu: emacs-slime: License is a mix of GPL2+ and public domain.
...
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
2018-10-19 18:00:14 +02:00
e2e5004f6e
gnu: Add lparallel.
...
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
2018-10-19 17:56:38 +02:00
24fd7586a4
gnu: Add sbcl-cl-webkit.
...
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
2018-10-19 17:56:38 +02:00
c80dfee9f1
gnu: Add sbcl-cl-cffi-gtk.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:38 +02:00
7b5b8c4405
gnu: Add sbcl-cl-cffi-gtk-gdk.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
2018-10-19 17:56:37 +02:00
a3bdddc359
gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
2018-10-19 17:56:37 +02:00
9ecc457b52
gnu: Add sbcl-cl-cffi-gtk-pango.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
2018-10-19 17:56:37 +02:00
7176fe7c32
gnu: Add sbcl-cl-cffi-gtk-cairo.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
2018-10-19 17:56:37 +02:00
867b3f4780
gnu: Add sbcl-cl-cffi-gtk-gio.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
2018-10-19 17:56:37 +02:00
77a5461c31
gnu: Add sbcl-cl-cffi-gtk-gobject.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
2018-10-19 17:56:37 +02:00
64dcf7d99b
gnu: Add sbcl-cl-cffi-gtk-glib.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-glib): New variable.
2018-10-19 17:56:37 +02:00
c88985d9b0
gnu: Add sbcl-cl-cffi-gtk.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:37 +02:00
85be9191ee
gnu: Add closer-mop.
...
* gnu/packages/lisp.scm (cl-closer-mop, ecl-closer-mop, sbcl-closer-mop): New variables.
2018-10-19 17:56:37 +02:00
4aa2342008
gnu: Add trivial-garbage.
...
* gnu/packages/lisp.scm (cl-trivial-garbage, ecl-trivial-garbage, sbcl-trivial-garbage): New variables.
2018-10-19 17:56:37 +02:00
2cc931db44
gnu: Add cl-unix-opts.
...
* gnu/packages/lisp.scm (cl-unix-opts, ecl-unix-opts, sbcl-unix-opts): New variables.
2018-10-19 17:56:37 +02:00
dedbf37e5d
gnu: Add cl-json.
...
* gnu/packages/lisp.scm (cl-json, ecl-cl-json, sbcl-cl-json): New variables.
2018-10-19 17:56:37 +02:00
4624d2e2b4
gnu: Add parenscript.
...
* gnu/packages/lisp.scm (cl-parenscript, ecl-parenscript, sbcl-parenscript): New variables.
2018-10-19 17:56:36 +02:00
8f065b47c7
gnu: Add sbcl-cl-sqlite.
...
* gnu/packages/lisp.scm (sbcl-cl-sqlite): New variable.
2018-10-19 17:56:36 +02:00
4112307268
gnu: Add sbcl-cffi.
...
* gnu/packages/lisp.scm (sbcl-cffi): New variable.
2018-10-19 17:56:36 +02:00
d3142f2ffb
gnu: Add sbcl-cffi-grovel.
...
* gnu/packages/lisp.scm (sbcl-cffi-grovel): New variable.
2018-10-19 17:56:36 +02:00
9eea4e0302
gnu: Add sbcl-cffi-libffi.
...
* gnu/packages/lisp.scm (sbcl-cffi-libffi): New variable.
2018-10-19 17:56:36 +02:00
99b3d203fb
gnu: Add sbcl-cffi-toolchain.
...
* gnu/packages/lisp.scm (sbcl-cffi-toolchain): New variable.
2018-10-19 17:56:35 +02:00
5d9bf76235
gnu: Add sbcl-cffi-bootstrap.
...
* gnu/packages/lisp.scm (sbcl-cffi-bootstrap): New variable.
2018-10-19 17:56:06 +02:00
92b1d09b68
gnu: Add queues.priority-cqueue.
...
* gnu/packages/lisp.scm (cl-queues.priority-cqueue, ecl-queues.priority-cqueue, sbcl-queues.priority-cqueue): New variables.
2018-10-19 17:54:13 +02:00
144085cd69
gnu: Add queues.priority-queue.
...
* gnu/packages/lisp.scm (cl-queues.priority-queue, ecl-queues.priority-queue, sbcl-queues.priority-queue): New variables.
2018-10-19 17:54:13 +02:00
a889ba99c1
gnu: Add queues.simple-cqueue.
...
* gnu/packages/lisp.scm (cl-queues.simple-cqueue, ecl-queues.simple-cqueue, sbcl-queues.simple-cqueue): New variables.
2018-10-19 17:54:13 +02:00
6fef7c0ec8
gnu: Add queues.simple-queue.
...
* gnu/packages/lisp.scm (cl-queues.simple-queue, ecl-queues.simple-queue, sbcl-queues.simple-queue): New variables.
2018-10-19 17:54:13 +02:00
eb766dfed0
gnu: Add queues.
...
* gnu/packages/lisp.scm (cl-queues, ecl-queues, sbcl-queues): New variables.
2018-10-19 17:54:13 +02:00
3f4c21c53e
gnu: Add puri.
...
* gnu/packages/lisp.scm (cl-puri, ecl-puri, sbcl-puri): New variables.
2018-10-19 17:54:13 +02:00
1de50cb73e
gnu: Add ptester.
...
* gnu/packages/lisp.scm (cl-ptester, ecl-ptester, sbcl-ptester): New variables.
2018-10-19 17:54:13 +02:00
a28d00d999
gnu: Add simple-scanf.
...
* gnu/packages/lisp.scm (cl-simple-scanf, ecl-simple-scanf, sbcl-simple-scanf): New variables.
2018-10-19 17:54:13 +02:00
28b52970ba
gnu: Add parse-float.
...
* gnu/packages/lisp.scm (cl-parse-float, ecl-parse-float, sbcl-parse-float): New variables.
2018-10-19 17:54:13 +02:00
41b3b866ce
gnu: Add proc-parse.
...
* gnu/packages/lisp.scm (cl-proc-parse, ecl-proc-parse, sbcl-proc-parse): New variables.
2018-10-19 17:54:12 +02:00
86afb0a272
gnu: Add prove.
...
* gnu/packages/lisp.scm (cl-prove, ecl-prove, sbcl-prove): New variables.
2018-10-19 17:54:12 +02:00
1a42bb80cb
gnu: Add prove-asdf.
...
* gnu/packages/lisp.scm (cl-prove-asdf, ecl-prove-asdf, sbcl-prove-asdf): New variables.
2018-10-19 17:54:12 +02:00
68a7b929f3
gnu: Add cl-ansi-text.
...
* gnu/packages/lisp.scm (cl-ansi-text, ecl-cl-ansi-text, sbcl-cl-ansi-text): New variables.
2018-10-19 17:54:12 +02:00
8caa928dd4
gnu: Add cl-colors.
...
* gnu/packages/lisp.scm (cl-colors, ecl-cl-colors, sbcl-cl-colors): New variables.
2018-10-19 17:54:12 +02:00
d414223205
gnu: Add let-plus.
...
* gnu/packages/lisp.scm (cl-let-plus, ecl-let-plus, sbcl-let-plus): New variables.
2018-10-19 17:54:12 +02:00
5b8a801d16
gnu: Add lift.
...
* gnu/packages/lisp.scm (cl-lift, ecl-lift, sbcl-lift): New variables.
2018-10-19 17:54:12 +02:00
9f3000cc11
gnu: Add anaphora.
...
* gnu/packages/lisp.scm (cl-anaphora, ecl-anaphora, sbcl-anaphora): New variables.
2018-10-19 17:54:12 +02:00
19a1c3be97
gnu: Add lisp-unit.
...
* gnu/packages/lisp.scm (cl-lisp-unit, ecl-lisp-unit, sbcl-lisp-unit): New variables.
2018-10-19 17:54:12 +02:00
c4d4ae1e16
gnu: Add sbcl-slime-swank.
...
* gnu/packages/lisp.scm (sbcl-slime-swank): New variable.
2018-10-19 17:54:12 +02:00
109ce303f4
gnu: Add cl-string-match.
...
* gnu/packages/lisp.scm (cl-string-match, ecl-cl-string-match, sbcl-cl-string-match): New variables.
2018-10-19 17:54:11 +02:00
a927eb3653
gnu: Add ascii-strings.
...
* gnu/packages/lisp.scm (cl-ascii-strings, ecl-ascii-strings, sbcl-ascii-strings): New variables.
2018-10-19 17:54:11 +02:00
8d8d1c8d6c
gnu: Add mgl-pax.
...
* gnu/packages/lisp.scm (cl-mgl-pax, ecl-mgl-pax, sbcl-mgl-pax): New variables.
2018-10-19 17:54:11 +02:00
f07efbf1e6
gnu: Add pythonic-string-reader.
...
* gnu/packages/lisp.scm (cl-pythonic-string-reader, ecl-pythonic-string-reader, sbcl-pythonic-string-reader): New variables.
2018-10-19 17:54:11 +02:00
fb8c4bc6ba
gnu: Add named-readtables.
...
* gnu/packages/lisp.scm (cl-named-readtables, ecl-named-readtables, sbcl-named-readtables): New variables.
FIX named-readtables
2018-10-19 17:54:11 +02:00
e549ba0598
gnu: Add ironclad.
...
* gnu/packages/lisp.scm (cl-ironclad, ecl-ironclad, sbcl-ironclad): New variables.
2018-10-19 17:54:11 +02:00
fbdd9b2c8b
gnu: Add nibbles.
...
* gnu/packages/lisp.scm (cl-nibbles, ecl-nibbles, sbcl-nibbles): New variables.
2018-10-19 17:54:11 +02:00
5800c538a1
gnu: Add rt.
...
* gnu/packages/lisp.scm (cl-rt, ecl-rt, sbcl-rt): New variables.
2018-10-19 17:54:11 +02:00
1855496813
gnu: Add cl-fad.
...
* gnu/packages/lisp.scm (cl-fad, ecl-cl-fad, sbcl-cl-fad): New variables.
2018-10-19 17:54:11 +02:00
1a3d39c446
gnu: Add 3bmd-ext-code-blocks.
...
* gnu/packages/lisp.scm (cl-3bmd-ext-code-blocks, ecl-3bmd-ext-code-blocks, sbcl-3bmd-ext-code-blocks): New variables.
2018-10-19 17:54:11 +02:00
ef0c3e1429
gnu: Add 3bmd.
...
* gnu/packages/lisp.scm (cl-3bmd, ecl-3bmd, sbcl-3bmd): New variables.
2018-10-19 17:54:10 +02:00
b4ba1c0a38
gnu: Add colorize.
...
* gnu/packages/lisp.scm (cl-colorize, ecl-colorize, sbcl-colorize): New variables.
2018-10-19 17:54:10 +02:00
6a1761cbf6
gnu: Add html-encode.
...
* gnu/packages/lisp.scm (cl-html-encode, ecl-html-encode, sbcl-html-encode): New variables.
2018-10-19 17:54:10 +02:00
141001597d
gnu: Add split-sequence.
...
* gnu/packages/lisp.scm (cl-split-sequence, ecl-split-sequence, sbcl-split-sequence): New variables.
2018-10-19 17:54:10 +02:00
bdf83297a8
gnu: Add esrap.
...
* gnu/packages/lisp.scm (cl-esrap, ecl-esrap, sbcl-esrap): New variables.
2018-10-19 17:54:10 +02:00
989cd79b5c
gnu: Add eos.
...
* gnu/packages/lisp.scm (cl-eos, ecl-eos, sbcl-eos): New variables.
2018-10-19 17:54:10 +02:00
8f41fa066e
gnu: Add jpl-queues.
...
* gnu/packages/lisp.scm (cl-jpl-queues, ecl-jpl-queues, sbcl-jpl-queues): New variables.
2018-10-19 17:54:10 +02:00
232e1abce7
gnu: Add jpl-util.
...
* gnu/packages/lisp.scm (cl-jpl-util, ecl-jpl-util, sbcl-jpl-util): New variables.
2018-10-19 17:54:10 +02:00
ef091e9155
gnu: Add cl-yacc.
...
* gnu/packages/lisp.scm (cl-cl-yacc, ecl-cl-yacc, sbcl-cl-yacc): New variables.
2018-10-19 17:54:10 +02:00
2d418bfa39
gnu: Add babel.
...
* gnu/packages/lisp.scm (cl-babel, ecl-babel, sbcl-babel): New variables.
2018-10-19 17:54:09 +02:00
4ef9ddbdae
gnu: Add hu.dwim.stefil.
...
* gnu/packages/lisp.scm (cl-hu.dwim.stefil, ecl-hu.dwim.stefil, sbcl-hu.dwim.stefil): New variables.
2018-10-19 17:54:09 +02:00
0cd6fb4970
gnu: Add hu.dwim.asdf.
...
* gnu/packages/lisp.scm (cl-hu.dwim.asdf, ecl-hu.dwim.asdf, sbcl-hu.dwim.asdf): New variables.
2018-10-19 17:54:09 +02:00
8c661ff1ef
gnu: Add trivial-features.
...
* gnu/packages/lisp.scm (cl-trivial-features, ecl-trivial-features, sbcl-trivial-features): New variables.
2018-10-19 17:54:09 +02:00
99c6124229
gnu: Add cl-strings.
...
* gnu/packages/lisp.scm (cl-strings, sbcl-cl-strings, ecl-cl-strings): New variables.
2018-10-19 17:25:40 +02:00
e7b2937d19
gnu: Add texlive-latex-koma-script.
...
* gnu/packages/tex.scm (texlive-latex-koma-script): New variable.
2018-10-19 15:17:55 +02:00
17ef5f1ff9
gnu: Add texlive-latex-pgf.
...
* gnu/packages/tex.scm (texlive-latex-pgf): New variable.
2018-10-19 15:16:40 +02:00
910d67fb95
gnu: Add texlive-generic-ulem.
...
* gnu/packages/tex.scm (texlive-generic-ulem): New variable.
2018-10-19 15:11:52 +02:00
0e73c11bb2
gnu: Add texlive-latex-eukdate.
...
* gnu/packages/tex.scm (texlive-latex-eukdate): New variable.
2018-10-19 15:10:18 +02:00
707babdde4
gnu: Add texlive-latex-needspace.
...
* gnu/packages/tex.scm (texlive-latex-needspace): New variable.
2018-10-19 15:10:02 +02:00
b718793e2a
gnu: Add texlive-latex-ms.
...
* gnu/packages/tex.scm (texlive-latex-ms): New variable.
2018-10-19 15:08:45 +02:00
0fd874ebd1
gnu: youtube-dl: Update to 2018.10.05.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.10.05.
2018-10-19 11:43:35 +02:00
2f4d43584c
system: Rename .zlogin to .zprofile.
...
Reported by Meiyo Peng <meiyo.peng@gmail.com>.
* gnu/system/shadow.scm (default-skeletons): Rename zlogin to zprofile.
2018-10-19 00:45:20 -07:00
7d1f21c69a
gnu: vulkan-headers: Update to 1.1.85.0.
...
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.85.0.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
2018-10-19 08:43:29 +02:00
eed00f93e8
gnu: libssh: Update to 0.7.6 [fixes CVE-2018-10933].
...
* gnu/packages/ssh.scm (libssh): Update to 0.7.6.
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Adjust patch.
2018-10-18 23:08:45 -04:00
75b2afd953
gnu: linux-libre: Update to 4.18.15.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.15.
(%linux-libre-hash): Update hash.
2018-10-18 22:53:00 -04:00
ef8e7e3298
gnu: linux-libre@4.14: Update to 4.14.77.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.77.
(%linux-libre-4.14-hash): Update hash.
2018-10-18 22:52:58 -04:00
1e672a01be
gnu: linux-libre@4.9: Update to 4.9.134.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.134.
2018-10-18 22:52:56 -04:00
29f40ee547
gnu: libgit2: Update to 0.26.7.
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* gnu/packages/version-control.scm (libgit2): Update to 0.26.7.
2018-10-19 03:18:57 +02:00
2c0a3ed1f9
gnu: tmux: Update to 2.8.
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* gnu/packages/tmux.scm (tmux): Update to 2.8.
2018-10-19 03:18:57 +02:00
a908ffd1ab
gnu: notmuch: Update to 0.28.
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* gnu/packages/mail.scm (notmuch): Update to 0.28.
2018-10-19 03:18:57 +02:00
3d472b5ee1
services: WPA Supplicant: Fix syntax error.
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This is a followup to commit acce0a474c
2018-10-19 03:18:22 +02:00
402e60859d
gnu: linux-libre: Enable SHPC PCI Hotplug driver on ARM64.
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Fixes <https://bugs.gnu.org/32840 > on ARM64.
* gnu/packages/aux-files/linux-libre/4.18-arm64.conf: Add
CONFIG_HOTPLUG_PCI_SHPC=y.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 00:11:42 +02:00
d36cd88873
gnu: grub-efi: Fix an uninitialized variable issue.
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* gnu/packages/patches/grub-check-error-efibootmgr.patch: Add hunk to
correct uninitialized variable.
2018-10-19 00:11:42 +02:00
33428d1267
gnu: javacc: Bootstrap from javacc-4 instead of bootstrap binary.
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* gnu/packages/java.scm (javacc)[source](snippet): Delete bootstrap binary.
[arguments]: Set 'bootstrap-jar' path.
[native-inputs]: Add 'javacc-4'.
2018-10-18 14:59:55 +02:00
6662d65f96
gnu: javacc: Use snippet to delete bundled jars.
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* gnu/packages/java.scm (javacc-4)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase and add 'delete-tests'
phase.
* gnu/packages/java.scm (javacc)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase.
2018-10-18 14:59:52 +02:00
53fb0476ec
gnu: javacc: 'javacc' now inherits from 'javacc-4'.
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* gnu/packages/java.scm (javacc, javacc-4): 'javacc' now inherits from
'javacc-4' instead of the opposite around.
2018-10-18 14:59:44 +02:00
39d7fdce45
services: dhcp-client: Deprecate 'dhcp-client-service' procedure.
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* gnu/services/networking.scm (dhcp-client-service-type): Add default
value.
* gnu/system/examples/bare-bones.tmpl: Use (service
dhcp-client-service-type) instead of (dhcp-client-service).
* gnu/system/examples/beaglebone-black.tmpl: Likewise.
* gnu/tests/base.scm (%avahi-os): Likewise.
* gnu/tests/databases.scm (%memcached-os): Likewise.
(%mongodb-os): Likewise.
* gnu/tests/dict.scm (%dicod-os): Likewise.
* gnu/tests/mail.scm (%opensmtpd-os): Likewise.
(%exim-os): Likewise.
(%dovecot-os): Likewise.
* gnu/tests/messaging.scm (run-xmpp-test): Likewise.
(run-bitlbee-test): Likewise.
* gnu/tests/monitoring.scm (%prometheus-node-exporter-os): Likewise.
* gnu/tests/networking.scm (%inetd-os): Likewise.
(run-iptables-test): Likewise.
* gnu/tests/nfs.scm (%base-os): Likewise.
* gnu/tests/rsync.scm (%rsync-os): Likewise.
* gnu/tests/ssh.scm (run-ssh-test): Likewise.
* gnu/tests/version-control.scm (%cgit-os): Likewise.
(%git-http-os): Likewise.
(%gitolite-os): Likewise.
* gnu/tests/virtualization.scm (%libvirt-os): Likewise.
* gnu/tests/web.scm (%httpd-os): Likewise.
(%nginx-os): Likewise.
(%varnish-os): Likewise.
(%php-fpm-os): Likewise.
(%hpcguix-web-os): Likewise.
(%tailon-os): Likewise.
* tests/guix-system.sh: Likewise.
* doc/guix.texi (Networking Services): Document
'dhcp-client-service-type' and remove 'dhcp-client-service'.
2018-10-18 01:12:22 +02:00
b286e3b368
gnu: retux: Update to 1.3.6.
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* gnu/packages/games.scm (retux): Update to 1.3.6.
2018-10-17 17:04:27 -04:00
0592db2873
gnu: wesnoth: Update to 1.14.5.
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* gnu/packages/games.scm (wesnoth): Update to 1.14.5.
2018-10-17 16:27:38 -04:00
acce0a474c
services: wpa-supplicant: Extend to support configuration parameters.
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This allows using WPA Supplicant "standalone" without an additional
network manager. The default configuration is unchanged.
* gnu/services/networking.scm (<wpa-supplicant-configuration>): New record type.
(wpa-supplicant-shepherd-service): Pass configuration records to the daemon.
(wpa-supplicant-service-type): Adjust accordingly.
* doc/guix.texi (Networking Services): Document the new service type.
2018-10-17 20:34:37 +02:00
a55ebe2e3a
gnu: python2: Add upstream security fixes.
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This addresses CVE-2018-{1060,1061,14647,1000802}.
* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
2018-10-17 20:34:37 +02:00
90aeaee861
gnu: python: Fix CVE-2018-14647.
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* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
2018-10-17 20:34:37 +02:00
1d43756107
gnu: strace: Check before enabling personalities.
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* gnu/packages/linux.scm (strace)[arguments]: Add configure flag to
check for personality support.
2018-10-17 21:28:05 +03:00
82402f76be
gnu: hyperrogue: Update to 10.4t.
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* gnu/packages/games.scm (hyperrogue): Update to 10.4t.
[arguments]: Modify 'make-flags'. Modify 'configure' and 'install' phases.
2018-10-17 13:47:41 -04:00
05f8943f04
gnu: emacs-helm-system-packages: Add recutils to inputs.
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* gnu/packages/emacs.scm (emacs-helm-system-packages)[inputs]: Use recutils.
2018-10-17 10:37:35 +02:00
15b283e712
gnu: streamlink: Update to 0.14.2.
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* gnu/packages/video.scm (streamlink): Update to 0.14.2.
[source]: Download from pypi.
2018-10-17 11:24:18 +03:00
24220e0f09
gnu: emacs-nodejs-repl: Update to 0.2.0.
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* gnu/packages/emacs.scm (emacs-nodejs-repl): Update to 0.2.0.
2018-10-16 23:02:50 -04:00
6f1ce09d79
gnu: Add guix-minimal.
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* gnu/packages/guile.scm (guile-2.0.13): New variable.
* gnu/packages/package-management.scm (guix)[arguments]: Adjust 'wrap-program'
phase to handle "missing" inputs.
(guix-minimal): New variable.
2018-10-16 17:09:15 -05:00
c8e3651a82
gnu: guile2.0-guix: Fix build.
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* gnu/packages/gnupg.scm (guile2.0-gcrypt): New variable.
* gnu/packages/guile.scm (guile2.0-sqlite3): New variable.
* gnu/packages/package-management.scm (guile2.0-guix)[propagated-inputs]: Use
them.
2018-10-16 17:09:15 -05:00
02d5ed4a27
gnu: GStreamer plugins: Update MP3 features for GStreamer 1.14.
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GStreamer moved all MPEG-1 audio (mp1, mp2, and mp3) decoders and encoders to
the group of "good" plugins in GStreamer 1.14.0. See the 'NEWS' file for more
information.
* gnu/packages/gstreamer.scm (gst-plugins-ugly)[inputs]: Remove lame, mpg123,
and twolame.
(gst-plugins-bad): Remove mpg123.
(gst-plugins-good): Add lame, mpg123, and twolame.
2018-10-16 13:40:14 -04:00
2d4a753a7c
gnu: xpra: Update to 2.4.
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* gnu/packages/xorg.scm (xpra): Update to 2.4.
2018-10-16 14:27:28 +02:00
f1376bfabe
gnu: emacs-exwm: Update to 0.20.
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* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
2018-10-16 11:10:04 +02:00
503fe87098
gnu: emacs-xelb: Update to 0.16.
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* gnu/packages/emacs.scm (emacs-xelb): Update to 0.16.
2018-10-16 10:57:53 +02:00
532f92c8f3
gnu: guix: Update to f9a8fce.
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* gnu/packages/package-management.scm (guix): Update to f9a8fce
2018-10-15 23:54:20 +02:00
2ab321ca37
gnu: go@1.4: Add support for aarch64-linux.
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* gnu/packages/golang.scm (go@1.4)[arguments]: Build for armhf-linux
when building for aarch64-linux.
[supported-systems]: Add aarch64-linux.
2018-10-15 14:21:07 +03:00
2c89b4b550
gnu: wine-staging: Update to 3.18.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.18.
* gnu/packages/wine.scm (wine-staging): Update to 3.18.
2018-10-15 10:50:48 +02:00
b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux.
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* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
2018-10-15 11:40:34 +03:00
2d5fa80e83
gnu: audacity: Update home page.
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* gnu/packages/audio.scm (audacity)[home-page]: Update.
2018-10-15 06:19:38 +02:00
e02013b7de
gnu: hexchat: Use HTTPS home page.
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* gnu/packages/messaging.scm (hexchat)[home-page]: Use HTTPS.
2018-10-15 06:19:38 +02:00
4a147986a0
gnu: haveged: Teach the controversy.
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* gnu/packages/linux.scm (haveged)[description]: Suggest adding
additional entropy sources.
2018-10-15 06:19:38 +02:00
dfe05297f3
gnu: x265: Update to 2.9.
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* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-15 06:19:37 +02:00
4702d45280
gnu: opensm: Update to 3.3.21.
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* gnu/packages/fabric-management.scm (opensm): Update to 3.3.21.
[source]: Update tarball URI.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Rename 'doc' phase to 'install-doc'.
Omit AUTHORS and ChangeLog files. They are more than a decade old.
2018-10-15 06:19:37 +02:00
9cac043cc0
gnu: restic: Update to 0.9.3.
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* gnu/packages/backup.scm (restic): Update to 0.9.3.
[arguments]: Disable 'restic self-update'.
2018-10-15 06:19:37 +02:00
3a6e1fe8c8
gnu: perl-xml-feed: Update to 0.55.
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* gnu/packages/xml.scm (perl-xml-feed): Update to 0.55.
2018-10-15 06:19:36 +02:00
66a9f08bb9
gnu: Add python-falcon-cors.
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* gnu/packages/python-web.scm (python-falcon-cors): New variable.
2018-10-14 22:50:27 -04:00
bb840999c8
gnu: Add python-falcon.
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* gnu/packages/python-web.scm (python-falcon): New variable.
2018-10-14 22:02:40 -04:00
0731fc1ce7
gnu: python-mimeparse: Update to 1.6.0.
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* gnu/packages/python.scm (python-mimeparse): Update to 1.6.0.
[phases]: Enable tests with a custom check phase.
2018-10-14 22:02:40 -04:00
614f49c49a
gnu: linux-libre: Update to 4.18.14.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.14.
(%linux-libre-hash): Update hash.
2018-10-14 19:27:46 -04:00
b0fe6b5785
gnu: linux-libre@4.14: Update to 4.14.76.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.76.
(%linux-libre-4.14-hash): Update hash.
2018-10-14 19:13:56 -04:00
f266e82ad2
gnu: linux-libre@4.9: Update to 4.9.133.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.133.
2018-10-14 19:09:24 -04:00
2dd1bfcb58
gnu: linux-libre@4.4: Update to 4.4.161.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.161.
2018-10-14 19:07:35 -04:00
89f9df6cfd
gnu: icecat: Build with rust-1.24.
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* gnu/packages/gnuzilla.scm (icecat)[native-inputs]: Use the oldest
compatable rust over newer releases when building icecat.
2018-10-14 09:42:54 +03:00
40f856fae8
gnu: csound: Update to 6.11.0.
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* gnu/packages/audio.scm (csound): Update to 6.11.0.
[home-page]: Change to "https://csound.com/ ".
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-14 10:52:12 +08:00
d7814696b8
gnu: python-configargparse: Use pypi-uri.
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* gnu/packages/python.scm (python-configargparse,
python2-configargparse)[source]: Use pypi-uri.
2018-10-12 23:42:43 -04:00
f1be3735db
gnu: khal: Update to 0.9.10.
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* gnu/packages/calendar.scm (khal): Update to 0.9.10.
2018-10-12 23:42:43 -04:00
3c4d307e86
gnu: python-icalendar: Update to 4.0.2.
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* gnu/packages/python.scm (python-icalendar: Update to 4.0.2.
2018-10-12 23:42:43 -04:00
3584eeb9a1
gnu: ImageMagick: Update to 6.9.10-12.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-12.
2018-10-12 23:42:39 -04:00
Tobias Geerinckx-Rice
Mark H Weaver
Brett Gilio
Leo Famulari
Laura Lazzati
Pierre Neidhardt
Meiyo Peng
Nicolas Goaziou
Marius Bakke
Christopher Lemmer Webber
Ricardo Wurmus
Pierre Langlois
Luther Thompson
Ludovic Courtès
Efraim Flashner
Ben Woodcroft
Kei Kebreau
Oleg Pykhalov
Christopher Baines
nixo
Amirouche
Pierre Neidhardt
Rutger Helling
Chris Marusich
Alex Vong
Maxim Cournoyer
Eric Bavier
Clément Lassieur