9d8a52d3bd
gnu: freeipmi: Update to 1.6.14.
...
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.14.
Change-Id: I4c729baaf2a45391f95b6f96441a96d2b0f58f40
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-16 09:55:17 +00:00
5e1e789ffe
gnu: guix-data-service: Update to 0.0.1-46.b4583bb.
...
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-46.b4583bb.
Change-Id: Iad913c9e7abc43855e8b7964e7753438df6e2300
2024-03-16 09:54:25 +00:00
8a53a71cbd
gnu: bffe: Update to 0-5.bdfaab9.
...
* gnu/packages/package-management.scm (bffe): Update to 0-5.bdfaab9.
Change-Id: I7483026b61971e6420eab5257f0ef8afd54d032d
2024-03-16 09:51:11 +00:00
6ef846b9dc
gnu: guix-build-coordinator: Update to 0-99.d802b81.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-99.d802b81.
Change-Id: I82067857ed358c0895162b4f2fb7a775ede12e7d
2024-03-16 09:32:14 +00:00
6f05c96f96
gnu: go-github-com-bwesterb-go-ristretto: Move to golang-crypto.
...
* gnu/packages/golang.scm (go-github-com-bwesterb-go-ristretto): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.
Change-Id: Ia028e4c5ccceaec3f0ceb828a147eff72cf6a20f
2024-03-15 23:54:12 +00:00
5b59c149e0
gnu: go-github-com-beorn7-perks-quantile: Move to golang-xyz.
...
* gnu/packages/syncthing.scm (go-github-com-beorn7-perks-quantile): Move
from here ...
* gnu/packages/golang-xyz.scm: ... to here.
Change-Id: I09a2080b78fd3273af75cbbbb49718bb8eec86e5
2024-03-15 23:43:58 +00:00
47f2a8c14b
gnu: kubo: Unbundle more packages.
...
* gnu/packages/ipfs.scm (kubo) [snippet]: Remove more available vendor
packages.
[inputs]: Add go-github-com-benbjohnson-clock and
go-github-com-blang-semver-v4. Remove go-github-com-cheggaaa-pb-v3,
fail over to vendor package explicitly as v3 is not required.
Change-Id: I8317ea656120b034a98d180278b928f0744f5fbb
2024-03-15 23:33:13 +00:00
9e2d8ed8fd
gnu: go-github-com-beorn7-perks-quantile: Fix indentation.
...
* gnu/packages/syncthing.scm (go-github-com-beorn7-perks-quantile): Fix
indentation.
Change-Id: Id159b4314fc25ecebc0737221995823e28045626
2024-03-15 23:33:13 +00:00
2f0aba1fd4
gnu: go-github-com-beorn7-perks-quantile: Update to 1.0.1.
...
* gnu/packages/syncthing.scm (go-github-com-beorn7-perks-quantile):
Update to 1.0.1.
Change-Id: Ie8c864dbc15b3aef3e4575337b940b625d6f9bbf
2024-03-15 23:33:12 +00:00
62fa7ac31e
gnu: kubo: Sort inputs alphabetically.
...
* gnu/packages/ipfs.scm (kudo) [inputs]: Sort alphabetically to ease
maintenance.
Change-Id: Icb95464b5b8cf7d6e26285628198cfcd5c90e695
2024-03-15 23:33:12 +00:00
024a0e2288
gnu: Add go-github-com-blang-semver-v4.
...
* gnu/packages/golang-xyz.scm (go-github-com-blang-semver-v4): New variable.
Change-Id: I87132b1b727b7e6ef4d46bb08dc5ad509db4e2e4
2024-03-15 23:33:12 +00:00
f59f85bdeb
gnu: go-github-com-blang-semver: Fix indentation.
...
* gnu/packages/golang-xyz.scm (go-github-com-blang-semver): Fix
indentation.
Change-Id: I9b5e792f2ef859ad7a9d799ba1e369f96e53294b
2024-03-15 23:33:12 +00:00
74cab6cd03
gnu: go-github-com-blang-semver: Update to 3.8.0.
...
* gnu/packages/golang-xyz.scm (go-github-com-blang-semver): Update to 3.8.0.
Change-Id: I5f1eec936236e4f8984d6aabbab9a9ce99e291a3
2024-03-15 23:33:12 +00:00
868e21bb76
gnu: guile-scheme-json-rpc: Update to 0.4.5a.
...
Shift some inputs requiring during runtime.
* gnu/packages/guile-xyz.scm (guile-scheme-json-rpc): Update to 0.4.5a.
[inputs]: Remove guile-srfi-145 and guile-srfi-180.
[propagated-inputs]: Add guile-srfi-145 and guile-srfi-180.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: If1c6ffaf6269c36ec857fd6f0aec444869468d24
2024-03-15 23:24:56 +00:00
10345d2f63
gnu: r-clusterprofiler: Update to 4.10.1.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.1.
Change-Id: I05b41c27d1e1ac8b2887845df5a4a75d45513929
2024-03-15 23:54:35 +01:00
48e458e662
gnu: r-zlibbioc: Update to 1.48.2.
...
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.2.
[native-inputs]: Add r-knitr.
Change-Id: Iee1c599473d30532660eb3770cf471ff979530dd
2024-03-15 23:54:35 +01:00
b11f7c18bd
gnu: r-stringdb: Update to 2.14.3.
...
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.3.
[propagated-inputs]: Remove r-rcurl; add r-httr.
Change-Id: Id46873bee69cdd1047002db3505ff5420097e9e9
2024-03-15 23:54:35 +01:00
74066baa0b
gnu: r-gsva: Update to 1.50.1.
...
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.1.
Change-Id: Ib298992cb9ea4615fe3888e799c332e778a7b5be
2024-03-15 23:54:35 +01:00
7416d0f273
gnu: r-genomicfeatures: Update to 1.54.4.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.4.
[propagated-inputs]: Remove r-rcurl; add r-httr and r-rjson.
Change-Id: Iaed5177d04bc1c292dfad607f82401f45cfd02bc
2024-03-15 23:54:35 +01:00
df26e72fd6
gnu: r-genomeinfodb: Update to 1.38.7.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.7.
[propagated-inputs]: Remove r-rcurl.
Change-Id: Ifc265a49ed946f3548ff279b930a8346c42025a8
2024-03-15 23:54:35 +01:00
b49398487c
gnu: r-deseq2: Update to 1.42.1.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.1.
Change-Id: Ida0b7ad662c44b2b12af487bb6aa8364874ce3da
2024-03-15 23:54:35 +01:00
db7d9e6cab
gnu: r-biostrings: Update to 2.70.3.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.3.
Change-Id: I4a921a148d9f54be13967ed0e3092353a683f20f
2024-03-15 23:54:35 +01:00
f97a8a8650
gnu: r-coregx: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.1.
Change-Id: Icb0eb5a7697811f4272cda3d42d3c428bb59bd23
2024-03-15 23:54:35 +01:00
900ad49572
gnu: r-asics: Update to 2.18.1.
...
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.1.
Change-Id: I760771fd8fe57984ae1d0c96b72cb63562a1b43e
2024-03-15 23:54:35 +01:00
999bfa0d54
doc: build: Update paths to style sheets.
...
The Guix website style sheets are now organized in themes. This change
makes the documentation builder use the resources provided by a theme
called "initial" (See https://issues.guix.gnu.org/69783 ).
* doc/build.scm (syntax-highlighted-html): Update path to CSS.
(html-manual-indexes): Likewise.
(stylized-html): Likewise, and update path to language picker image.
Change-Id: Ib2d51fcfdec42ad827add1ead1cfee4c9c4e65b7
Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
2024-03-15 23:22:45 +01:00
93aefca7ba
gnu: alacritty: Fix loading of libxkbcommon-x11.so.
...
* gnu/packages/terminals.scm (alacritty)[arguments]: Handle
libxkbcommon-x11.so in the ‘add-absolute-library-references’ phase.
This fixes this error:
thread 'main' panicked at /tmp/guix-build-alacritty-0.13.1.drv-0/source/guix-vendor/rust-xkbcommon-dl-0.4.1.tar.gz/src/x11.rs:59:28:
Library libxkbcommon-x11.so could not be loaded.
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
Change-Id: Ifbf19b4962bc3d9eeba6acdf32ca66b0c662f493
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-03-15 10:32:03 +02:00
646810ab6a
gnu: python-pycurl: Disable one failing test.
...
* gnu/packages/python-web.com (python-pycurl) [arguments]
<#:test-flags>: Disable one more failing test which occurs on CI with
CPU thread count more than 16.
Change-Id: Ie772a7f096357b541cc8baa2349a524f05500e52
2024-03-15 07:48:08 +00:00
e1e6116e05
Revert "gnu: linux-libre-documentation: Fix compilation."
...
This bug was fixed upstream in 6.7.6.
This reverts commit b6f82b9ef1
2024-03-15 01:41:23 -04:00
f28802a813
gnu: linux-libre 4.19: Update to 4.19.309.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.309.
(linux-libre-4.19-pristine-source): Update hash.
Change-Id: If579a8179ded35cb4269e733bd96ee6f7c5d5360
2024-03-15 01:41:23 -04:00
557fc25caa
gnu: linux-libre 5.4: Update to 5.4.271.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.271.
(linux-libre-5.4-pristine-source): Update hash.
Change-Id: Iaf7277f1f4ec3f106b8f0b82aef5a8be953972bd
2024-03-15 01:41:22 -04:00
65d12a4a97
gnu: linux-libre 5.10: Update to 5.10.212.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.212.
(linux-libre-5.10-pristine-source): Update hash.
Change-Id: I620729ec22cd67bbe22dc808ba6b4d74d2c0479d
2024-03-15 01:41:22 -04:00
cc2b28975b
gnu: linux-libre 5.15: Update to 5.15.151.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.151.
(linux-libre-5.15-pristine-source): Update hash.
Change-Id: I83ddffad4f1ce05723faa5d243e8345b21e39edb
2024-03-15 01:41:22 -04:00
c6d2fa1139
gnu: linux-libre 6.1: Update to 6.1.81.
...
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.81.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.
Change-Id: Iaec9f01a190d67bcab490c318456241ea8eabf22
2024-03-15 01:41:22 -04:00
1e568b2ed3
gnu: linux-libre 6.6: Update to 6.6.21.
...
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.21.
(linux-libre-6.6-pristine-source): Update hash.
Change-Id: Ic2f197add55f89196010c32957e10d3683cb8c01
2024-03-15 01:41:21 -04:00
019fb14b1e
gnu: linux-libre: Update to 6.7.9.
...
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.9.
(linux-libre-6.7-pristine-source): Update hash.
Change-Id: I9d3e3907623b17f1a47b78ea00e9b7a5cf428ff6
2024-03-15 01:41:21 -04:00
a862a99bb3
gnu: python-pycurl: Enable tests.
...
* gnu/packages/python-web.scm (python-pycurl): Enable most of the tests.
[build-system]: Swap to pyproject-build-system.
[arguments] <#:tests?>: Enable them.
<#:test-arguments>: Disable some failing and hanging tests.
[native-inputs]: Add python-flaky, python-pytest, and
python-pytest-xdist.
Change-Id: Ie222aa1111720f2e39b950b79d9e707401be7e8f
2024-03-14 23:29:02 +00:00
2187ac84d0
gnu: packages: python-web: Sort use-modules alphabetically.
...
* gnu/packages/python-web.scm: Sort #:use-module alphabetically to ease
maintenance.
Change-Id: Id01b66ff7eaf610895c1275c2abfd9de2e537d8e
2024-03-14 23:28:52 +00:00
e22175655d
gnu: Add python-zodb.
...
* gnu/packages/python-web.scm (python-zodb): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14 22:49:59 +00:00
36da1ad73d
gnu: Add python-zodbpickle.
...
* gnu/packages/python-web.scm (python-zodbpickle): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14 22:49:51 +00:00
fb377b4af7
gnu: Add python-zconfig.
...
* gnu/packages/python-web.scm (python-zconfig): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14 22:22:45 +00:00
efe62c5ed3
gnu: Add morpheus.
...
* gnu/packages/bioinformatics.scm (morpheus): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Change-Id: I4bf14414f497ff17690b1d26420d442d236fd6b5
2024-03-14 21:01:37 +01:00
7319b4d528
teams: Add Tanguy Le Carrour.
...
* etc/teams.scm.in ("Tanguy Le Carrour"): New member.
Change-Id: Ic1b1588a5a8bc67ee8e135c3069966f139374529
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:48:07 +00:00
8166d5b81e
gnu: raspi-gpio: Make public.
...
As it's unclear why it's not.
* gnu/packages/raspberry-pi.scm (raspi-gpio): Make variable public.
Change-Id: Iaf2789120a726d702d97c3a30a32e3b2cf5da3f1
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:42:42 +00:00
0e00d2ced1
gnu: combinatorial-blas: Update source hash.
...
Diffoscope shows there are changes, but they don't look significant.
* gnu/packages/maths.scm (combinatorial-blas): Update source hash.
Change-Id: I32db6df0ef7c652572b1e874fe22175a4b66af6e
2024-03-14 13:40:31 +00:00
3bd795bc57
doc: Fix section on LUKS support.
...
Only LUKS1 is supported in Guix at the time of this commit. Contrarily to what
reported in previous versions of this section, LUKS2 is not supported.
* doc/guix.texi (Keyboard Layout, Networking, and Partitioning)[Disk
Partitioning]: Fix section on LUKS support.
Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: Ia670963178810174d3ea4585c537defbaaeb0f25
2024-03-14 13:31:13 +00:00
b5bd0d3a7e
gnu: openjdk21: Update to 21.0.2.
...
* gnu/packages/java.scm (openjdk21): Update to 21.0.2.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:27:14 +00:00
37073f9dd2
gnu: openjdk20: Update to 20.0.2.
...
* gnu/packages/java.scm (openjdk20): Update to 20.0.2.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:27:13 +00:00
289666a09c
gnu: openjdk18: Update to 18.0.2.1.
...
* gnu/packages/java.scm (openjdk18): Update to 18.0.2.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:27:13 +00:00
b844b81dce
gnu: openjdk17: Update to 17.0.10.
...
* gnu/packages/java.scm (openjdk17): Update to 17.0.10.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:27:13 +00:00
62c7f9947e
gnu: openjdk15: Update to 15.0.10.
...
* gnu/packages/java.scm (openjdk15): Update to 15.0.10.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14 13:27:13 +00:00
Andy Tai
Christopher Baines
Sharlatan Hellseher
Ilya Chernyshov
Ricardo Wurmus
Luis Felipe
Clément Lassieur
Leo Famulari
Troy Figiel
Tanguy Le Carrour
Jean-Pierre De Jesus DIAZ
Fabio Natali
Greg Hogan