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127165 Commits (9f05fbb67d0de4d577c21a6fb6888cb6be67cd12)

Author SHA1 Message Date
Ludovic Courtès 9f05fbb67d
tests: Make ‘guix time-machine’ test effective.
The test as added in 79ec651a28 had no
effect: first because ‘guix time-machine --commit=X’, not followed by a
command, does nothing, and second because the “! COMMAND” shell stanza
does not have the desired effect (see <https://issues.guix.gnu.org/62406>).

This change rewrites the test to make it effective.

* tests/guix-time-machine.sh: Rewrite.

Change-Id: Ib44a11331c8625e346139a236cffa699cdbd02f2
2023-11-05 23:23:23 +01:00
Ludovic Courtès 31b39f2a33
tests: inetd: Avoid race condition when looking for PID file.
* gnu/tests/networking.scm (run-inetd-test): Use ‘wait-for-file’ instead
of ‘file-exists?’.

Change-Id: I3e596814485428fb81595d81c4e03519340c6576
2023-11-05 23:23:23 +01:00
Ludovic Courtès 0c695bbf8d
tests: Honor system and target when lowering <system-test>.
* gnu/tests.scm (compile-system-test): Wrap ‘system-test-value’ call in
‘mparameterize’.

Change-Id: I4be28913a86f43059b0886ad2fcf81a9c699b730
2023-11-05 23:23:23 +01:00
Hilton Chain 286639c9af
gnu: phantomsocks: Update to 0.0.0-20231031033204-8b0ac27fc450.
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20231031033204-8b0ac27fc450.
[arguments]<#:go>: Use go-1.20.

Change-Id: I8cee734d5582c99b7940591ba14fba927992a201
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:14:26 +00:00
Hilton Chain c5267d334a
gnu: emacs-wanderlust: Update to 2.15.9-803.3e8cf26.
* gnu/packages/emacs-xyz.scm (emacs-wanderlust): Update to 2.15.9-803.3e8cf26.
[version]: Inline version.

Change-Id: I4b9a08016e525df80745d266f4932956475ef24b
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:13:51 +00:00
Hilton Chain 56c0c79511
gnu: emacs-semi-epg: Update to 1.14.6-247.d15603b.
* gnu/packages/emacs-xyz.scm (emacs-semi-epg): Update to 1.14.6-247.d15603b.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:13:51 +00:00
Sharlatan Hellseher 7995a474ea
gnu: python-asdf: Update to 3.0.0.
* gnu/packages/astronomy.scm (python-asdf-3.0): New variable, migrated
from python-asdf.
[arguments]: Move it from here ...
[native-inputs]: Remove python-astronomy, python-pytest-openfiles.
[propagated-inputs]: Add python-attrs. Remove
python-importlib-resources, python-jsonschema.

(python-asdf-2.15): New variable. Inherited from python-asdf-3.0.
[arguments]: ... to here.

(python-asdf): Set it to use python-asdf-2.15 as 3.0.0 includes some
breaking changes which may not testes in dependent projects.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 9f06cf2ed8
gnu: python-pytest-astropy: Update to 0.11.0.
* gnu/packages/python-check (python-pytest-astropy): Update to 0.11.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher c13950ad27
gnu: python-pytest-doctestplus: Update to 1.0.0.
* gnu/packages/python-check (python-pytest-doctestplus): Update to 1.0.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher a72d7beb3f
gnu: python-pytest-remotedata: Update to 0.4.1.
* gnu/packages/python-check (python-pytest-remotedata): Update to 0.4.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 2f33ac988c
gnu: python-jwst: Update to 1.12.5.
* gnu/packages/astronomy.scm (python-jwst): Update to 1.12.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 53a4452e98
gnu: python-ephem: Update to 4.1.5.
* gnu/packages/astronomy.scm (python-ephem): Update to 4.1.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 7e7a3bd6e0
gnu: python-crds: Update to 11.17.7.
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 944005417d
gnu: python-cdflib: Update to 1.2.3.
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 0420667cbe
gnu: python-astropy: Update to 5.3.4.
* gnu/packages/astronomy.scm (python-astropy): Update to 5.3.4.
[arguments]{phases}: Disable one failing test, reported upstream.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 20e7aa2732
gnu: libxisf: Update to 0.2.10.
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.10.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 966ffbf8c6
gnu: python-pyerfa: Update to 2.0.1.1.
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.1.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 95a1688229
gnu: erfa: Update to 2.0.1.
* gnu/packages/astronomy.scm (erfa): Update to 2.0.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher d9b6426cbb
gnu: python-astroalign: Update to 2.5.0.
* gnu/packages/astronomy.scm (python-astroalign): Update to 2.5.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 10917afe67
gnu: python-cdflib: Update to 1.2.2.
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 4d4e9b84ee
gnu: python-pynbody: Update to 1.4.1.
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.4.1.
[source]: Switch to git-fetch.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 0d7e51d8ee
gnu: python-spherical-geometry: Enable tests.
* gnu/packages/astronomy.scm (python-spherical-geometry): Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments]{phases}: Add 'build-extensions phase.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher a8c1c98690
gnu: python-spherical-geometry: Simplify package.
* gnu/packages/astronomy.scm (python-spherical-geometry):
[arguments]{phases}<preparations>: Switch to
SETUPTOOLS_SCM_PRETEND_VERSION evnar instead modifying setup.py.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher e7b315216a
gnu: imppg: Use standard configure phase.
* gnu/packages/astronomy.scm (imppg): Use G-expressions.
[arguments]{phases}: Use 'configure standard phase instead of
replacement.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Sharlatan Hellseher b4be620009
gnu: glnemo2: Fix home-page.
* gnu/packages/astronomy.scm (glnemo2): Fix home-page to point to actual
project's one.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
Bruno Victal 913d52952b
gnu: font-google-noto: Update to 23.11.1.
[1] indicates that [2] is the new _distribution_ upstream for Noto fonts.

[1]: <https://github.com/notofonts/noto-fonts>
[2]: <https://github.com/notofonts/notofonts.github.io>

* gnu/packages/fonts.scm (font-google-noto): Update to 23.11.1.
[source]<method>: Switch to git-fetch.

Change-Id: I242710336ec81489f9800b68416f45c57d28b2bd
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:08:20 +00:00
Artyom Bologov 04cb25ab9e
gnu: sbcl-cl-webkit: Update to 3.5.10.
gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.5.10.

Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: Ibd54d701a28267fe4fbb979112155839de9d89e5
2023-11-05 18:03:13 +00:00
Jaeme Sifat 0826cc8a07
doc: contributing: Replace reference to dunst.scm.
The contributing documentation makes a reference to dunst.scm as an example of
the build process failing after an update. This patch replaces that reference
with a much more permanent linux.scm.

* doc/contributing.texi: Replace reference to dunst.scm.

Change-Id: I89a4157eb253e25979bc35d6d3b12201a0d19951
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 17:57:57 +00:00
Jaeme Sifat bf6fdf76b0
gnu: Remove dunst.scm.
The dunst package is much beter suited to be in wm.scm. This patch deletes
dunst.scm, moves dunst to wm.scm, and removes dunst.scm from the build
process.

* gnu/local.mk (GNU_SYSTEM_MODULES): Remove dunst.scm.
* gnu/packages/dunst.scm: Delete file.
* gnu/packages/wm.scm (dunst): New variable.

Change-Id: I3b074f12f34e14ef1101069ed45ddb33f8d3ea51
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 17:57:56 +00:00
Jaeme Sifat a482d3d9ba
gnu: dunst: Update to 1.9.2.
* gnu/packages/dunst.scm (dunst): Update to 1.9.2.
[arguments]: Use gexps.

Change-Id: Ic13f1679074462918991a1ceba8571a46e721224
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 17:57:49 +00:00
Christopher Baines aa98a97607
lint: Speed up the formatting linter.
By using go-to-location which caches the number of bytes to seek by to get to
specific lines in a file.

* guix/lint.scm (report-formatting-issues): Use go-to-location.

Change-Id: I34e4d3acfbb1e14e026d2e7f712ba8d22b56c147
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 17:51:38 +00:00
Simon Tournier 1eb3133355
scripts: edit: Fix relative file-name with 'load-path' option.
* guix/scripts/edit.scm (search-path*): Return 'file' if exists when
'search-path' fails.

Change-Id: I891d63d0d28577a7d1732fc59435828ecc0a5c5a
2023-11-05 16:11:17 +01:00
Jelle Licht ab94e80601
gnu: node-lts: Update to 18.18.2.
* gnu/packages/node.scm (node-lts): Update to 18.18.2.
[arguments]<phases>: Add 'install-node-gyp-wrapper phase.

Change-Id: I6b17de33313505558a8fa9560126adef486fd0e3
2023-11-05 12:37:18 +01:00
VÖRÖSKŐI András 175532b749
gnu: Add rust-blake2-0.10.
* gnu/packages/crates-io.scm (rust-blake2-0.10): New variable.

Change-Id: I8cb30f21a62c563c9c7c559765d9672aed6680ad
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-11-05 12:22:39 +02:00
Janneke Nieuwenhuizen 7684214b3d
gnu: m2-planet: Update to 1.11.0.
* gnu/packages/mes.scm (m2-planet): Update to 1.11.0.

Change-Id: I65ebb434a090e0a57dac50764f16523946a6fa3f
2023-11-05 11:00:16 +01:00
Janneke Nieuwenhuizen 09feb16a0c
gnu: mescc-tools: Update to 1.5.0.
* gnu/packages/mes.scm (mescc-tools): Update to 1.5.0.

Change-Id: I53f6923b8378b5205356e068aa1f1481a9bf7b42
2023-11-05 10:59:40 +01:00
Efraim Flashner 4826856977
gnu: icedtea-7: Fix building on powerpc-linux.
* gnu/packages/java.scm (icedtea-7)[arguments]: Adjust custom
'install-libjvm phase to add support for powerpc-linux.

Change-Id: Ie77a2b53fdef1e0ddc0351e6c2d0241d08b80508
2023-11-05 08:42:48 +02:00
Mădălin Ionel Patrașcu adf716c171
gnu: Add r-screpertoire.
* gnu/packages/bioconductor.scm (r-screpertoire): New variable.

Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu 01b7d917a2
gnu: Add r-powertcr.
* gnu/packages/bioconductor.scm (r-powertcr): New variable.

Change-Id: I75fc30a7021d6199b768318da3afcfeaaafcf027
2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu 1678be98f2
gnu: Add r-evmix.
* gnu/packages/cran.scm (r-evmix): New variable.

Change-Id: I93152dee218e9cef85dd66e17231f1728f0ffb52
2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu ab64815f6a
gnu: Add r-truncdist.
* gnu/packages/cran.scm (r-truncdist): New variable.

Change-Id: Icb9f06a36e5ee5a58828dc2f496b71a850a911b9
2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu 3f991b817d
gnu: Add r-evd.
* gnu/packages/cran.scm (r-evd): New variable.

Change-Id: I1f3b2ee5829807f6f76cf87b4df43ae8005688bc
2023-11-04 23:13:51 +01:00
Wilko Meyer e3f318f048
gnu: linux-libre 5.10: Fix the hash of the deblob-scripts.
This is a followup to commit e672066097.

* gnu/packages/linux.scm (deblob-scripts 5.10): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I0fe56dd2694185b6c77468ecc844aaf25ec7564a
2023-07-23 22:26:01 -04:00
Wilko Meyer 3bb6938ffc
gnu: linux-libre 5.15: Fix the hash of the deblob-scripts.
This is a followup to commit b26526ea05.

* gnu/packages/linux.scm (deblob-scripts 5.15): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Ia59003f2ccfe98e2390593d1ca0b7077f0b7bd5d
2023-07-23 22:26:00 -04:00
Wilko Meyer 1d4813f275
gnu: linux-libre 6.1: Fix the hash of the deblob-scripts.
This is a followup to commit 26709726a8.

* gnu/packages/linux.scm (deblob-scripts 6.1): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I0035078f4c229763e56cf70ccae730804b123640
2023-07-23 22:26:00 -04:00
Mădălin Ionel Patrașcu 58786c82df
gnu: Add r-rnbeads.
* gnu/packages/bioconductor.scm (r-rnbeads): New variable.

Change-Id: I78b248a449473fc37ac414295faa6e61269b8625
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 17:09:53 +01:00
Mădălin Ionel Patrașcu 4c17016019
gnu: Add r-ewastools.
* gnu/packages/bioinformatics.scm (r-ewastools): New variable.

Change-Id: I4117dbee188c7d9547fe63b2b89ec9258bbda60b
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 17:03:24 +01:00
Mădălin Ionel Patrașcu a04800b811
gnu: Add r-mblm.
* gnu/packages/cran.scm (r-mblm): New variable.

Change-Id: Iddfa9bc03a4e5782623253cb70d1ae888545e2ec
2023-11-04 17:03:24 +01:00
Mădălin Ionel Patrașcu e16d152463
gnu: Add r-dnamcrosshyb.
* gnu/packages/bioinformatics.scm (r-dnamcrosshyb): New variable.

Change-Id: I19e332e6adf0ce9cc721d89bb74a1aa709778873
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 16:30:11 +01:00
Mădălin Ionel Patrașcu cb0e60cccf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked.
* gnu/packages/bioconductor.scm
  (r-bsgenome-hsapiens-ucsc-hg38-masked): New variable.

Change-Id: Ic1b646a3bd3b7262dd82f0972961c2e89628e90b
2023-11-04 16:30:11 +01:00