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89193 Commits (9fdc4b6c283c5aa5cf10205d87fb2c58b829b9d0)

Author SHA1 Message Date
Pierre Neidhardt dfeafdf109
gnu: emacs-sly-asdf: Update to 20220707.
* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20220707.
2022-07-07 09:22:41 +02:00
Nicolas Goaziou 20a0ed8cf5
gnu: emacs-org-re-reveal: Update to 3.14.1.
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.14.1.
2022-07-06 21:57:32 +02:00
Nicolas Goaziou d3e406caf2
gnu: emacs-burly: Update to 0.2.
* gnu/packages/emacs-xyz.scm (emacs-burly): Update to 0.2.
2022-07-06 21:46:07 +02:00
Nicolas Goaziou e20011fda4
gnu: emacs-ctable: Update to 0.1.3.
* gnu/packages/emacs-xyz.scm (emacs-ctable): Update to 0.1.3.
[arguments]<#:exclude>: Exclude unnecessary file leading to a build error.
2022-07-06 21:42:52 +02:00
Nicolas Goaziou eb9ea4c227
gnu: emacs-circe: Update to 2.12.
* gnu/packages/emacs-xyz.scm (emacs-circe): Update to 2.12.
2022-07-06 21:35:18 +02:00
Nicolas Goaziou 1fdba16821
gnu: emacs-elfeed-score: Update to 1.2.4.
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.4.
2022-07-06 21:26:39 +02:00
Ricardo Wurmus 17892c5f9c
gnu: mumi: Update to 0.0.2-1.0248507.
* gnu/packages/mail.scm (mumi): Update to 0.0.2-1.0248507.
2022-07-06 20:31:27 +02:00
Nicolas Goaziou ca3ba07b17
gnu: emacs-apheleia: Update to 3.0.
* gnu/packages/emacs-xyz.scm (emacs-apheleia): Update to 3.0.
2022-07-06 20:30:07 +02:00
Leo Famulari fe24e0c29c
gnu: OpenSSL 3.0.0: Update to 3.0.5 [fixes CVE-2022-2097 and CVE-2022-2274].
https://www.cve.org/CVERecord?id=CVE-2022-2097
https://www.cve.org/CVERecord?id=CVE-2022-2274

* gnu/packages/tls.scm (openssl-3.0): Update to 3.0.5.
2022-07-06 14:28:24 -04:00
Leo Famulari 39dcbc7fa3
gnu: OpenSSL: Update to 1.1.1q [fixes CVE-2022-2097].
https://www.cve.org/CVERecord?id=CVE-2022-2097

* gnu/packages/tls.scm (openssl/fixed): Update to 1.1.1q.
2022-07-06 14:28:21 -04:00
Nicolas Goaziou 7af6a2caff
gnu: emacs-ox-hugo: Update to 0.12.2.
* gnu/packages/emacs-xyz.scm (emacs-ox-hugo): Update to 0.12.2.
2022-07-06 20:25:52 +02:00
Nicolas Goaziou 0231871eb9
gnu: emacs-typit: Update to 0.3.0.
* gnu/packages/emacs-xyz.scm (emacs-typit): Update to 0.3.0.
2022-07-06 20:21:03 +02:00
Nicolas Goaziou ad5f1aa810
gnu: emacs-writegood-mode: Update to 2.2.0.
* gnu/packages/emacs-xyz.scm (emacs-writegood-mode): Update to 2.2.0.
2022-07-06 20:19:15 +02:00
Nicolas Goaziou 8697f48a02
gnu: emacs-visual-fill-column: Update to 2.5.
* gnu/packages/emacs-xyz.scm (emacs-visual-fill-column): Update to 2.5.
[source]: Update URL.
[home-page]: Update URL.
2022-07-06 20:16:56 +02:00
Nicolas Goaziou 4ea381aa40
gnu: emacs-crdt: Update to 0.3.0.
* gnu/packages/emacs-xyz.scm (emacs-crdt): Update to 0.3.0.
2022-07-06 20:11:42 +02:00
Nicolas Goaziou 059b6b3aba
gnu: emacs-citar: Update to 0.9.7.
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 0.9.7.
2022-07-06 20:06:57 +02:00
Nicolas Goaziou 2322567cdc
gnu: fsearch: Update to 0.1.4.
* gnu/packages/search.scm (fsearch): Update to 0.1.4.
2022-07-06 19:48:07 +02:00
Nicolas Goaziou 8821777808
gnu: rosegarden: Update to 22.06.
* gnu/packages/music.scm (rosegarden): Update to 22.06.
2022-07-06 19:45:01 +02:00
Nicolas Goaziou 7535fc29fb
gnu: emacs-ebdb: Update to 0.8.14.
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.14.
2022-07-06 19:27:33 +02:00
Ricardo Wurmus e1ae5ab2b9
gnu: mumi: Update to 0.0.2-0.88a68ba.
* gnu/packages/mail.scm (mumi): Update to 0.0.2-0.88a68ba.
2022-07-06 18:10:49 +02:00
Ricardo Wurmus 563bb6eab1
gnu: Add python-torchvision.
* gnu/packages/machine-learning.scm (python-torchvision): New variable.
2022-07-06 17:16:15 +02:00
Ricardo Wurmus d4d07ed92b
gnu: mumi: Update to 0.0.1-9.f73df11.
* gnu/packages/mail.scm (mumi): Update to 0.0.1-9.f73df11.
2022-07-06 14:21:32 +02:00
Ricardo Wurmus 6211ecfec8
gnu: Add hh-suite.
* gnu/packages/bioinformatics.scm (hh-suite): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus 5bd7de4ced
gnu: Add rust-trycmd-0.13.
* gnu/packages/crates-io.scm (rust-trycmd-0.13): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus c813136330
gnu: Add rust-toml-edit-0.14.
* gnu/packages/crates-io.scm (rust-toml-edit-0.14): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus 2fd79d33c6
gnu: Add rust-pretty-assertions-1.
* gnu/packages/crates-io.scm (rust-pretty-assertions-1): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus 6a246e151b
gnu: Add rust-kstring-2.
* gnu/packages/crates-io.scm (rust-kstring-2): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus 54e48e37d3
gnu: Add rust-snapbox-0.2.
* gnu/packages/crates-io.scm (rust-snapbox-0.2): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus e4d020d53a
gnu: Add rust-similar-2.
* gnu/packages/crates-io.scm (rust-similar-2): New variable.
2022-07-06 14:00:21 +02:00
Ricardo Wurmus 5c9461fb47
gnu: Add rust-libtest-mimic-0.3.
* gnu/packages/crates-io.scm (rust-libtest-mimic-0.3): New variable.
2022-07-06 14:00:21 +02:00
Efraim Flashner 422e5d3513
gnu: xl2tpd: Fix cross-compiling.
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Rewrite using gexps. Don't
hard-code CC as gcc.
2022-07-06 12:44:16 +03:00
Jean-Pierre De Jesus DIAZ 8760decca7
gnu: connman: Fix cross-compilation.
* gnu/packages/connman.scm (connman): Fix cross-compilation.
  [arguments]: Use G-Expressions. Set path to binaries at
  `#:configure-flags'.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 12:44:13 +03:00
Pierre Neidhardt 932bf7b293
gnu: sbcl-sketch: Include examples.
* gnu/packages/lisp-xyz.scm (sbcl-sketch)[arguments]: Add sketch-examples to
asd-systems.
2022-07-06 11:13:20 +02:00
Efraim Flashner bf22d0d038
gnu: txr: Install vim syntax files.
* gnu/packages/lisp.scm (txr)[arguments]: Add phase to install vim
syntax files.
2022-07-06 12:06:53 +03:00
Paul A. Patience c2fe78db73
gnu: txr: Update to 278.
* gnu/packages/lisp.scm (txr): Update to 278.
[source]: Use 'https' in url.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 12:06:52 +03:00
André A. Gomes ff181ed7a1
gnu: sbcl-quri: Update to 0.6.0.
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.6.0.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2022-07-06 11:05:36 +02:00
Philippe SWARTVAGHER 111bdcff48
gnu: hwloc: Update to 2.8.0
* gnu/packages/mpi.scm (hwloc): Update to 2.8.0

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 11:49:31 +03:00
Juliana Sims 8bea879715
gnu: qpwgraph: Add qpwgraph.
* gnu/packages/audio.scm (qpwgraph): Add qpwgraph.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-07-06 11:15:36 +03:00
Leo Famulari 3eeeaa26aa
gnu: Syncthing: Update to 1.20.3.
* gnu/packages/syncthing.scm (syncthing): Update to 1.20.3.
2022-07-05 23:09:30 -04:00
Leo Famulari fca8991850
gnu: Go: Update to 1.17.11.
* gnu/packages/golang.scm (go-1.17): Update to 1.17.11.
2022-07-05 23:09:27 -04:00
Leo Famulari c72c3e851b
gnu: WebKit: Update to 2.36.4 [security fixes].
Fixes CVE-2022-22677 and CVE-2022-26710.

* gnu/packages/webkit.scm (%webkit-version, webkitgtk, wpewebkit):
  Update to 2.36.4.
2022-07-05 18:46:24 -04:00
Ludovic Courtès 43cf8861b8
gnu: liblantern: Update to 0.8.0.
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.0.
2022-07-05 16:56:05 +02:00
Ludovic Courtès 20f55375dc
gnu: python-pytorch: Update to 1.11.0.
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0.
[source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc"
substitution.
[arguments]: Add 'remove-caffe2-onnx-scripts' phase.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: Update.
2022-07-05 16:56:04 +02:00
Ludovic Courtès b211824f0a
gnu: onnx: Update to 1.12.0.
* gnu/packages/machine-learning.scm (onnx): Update to 1.12.0.
2022-07-05 16:56:04 +02:00
Nicolas Goaziou f14895d0c4
gnu: emacs-org-ql: Sort inputs alphabetically.
* gnu/packages/emacs-xyz.scm (emacs-org-ql)[propagated-inputs]: Sort inputs
alphabetically.
2022-07-05 14:18:25 +02:00
Nicolas Goaziou 36253cb636
gnu: emacs-org-ql: Update to 0.6.2.
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.6.2.
2022-07-05 14:16:45 +02:00
Ricardo Wurmus 801be314d2
gnu: r-sandwich: Delete more generated vignette files.
* gnu/packages/cran.scm (r-sandwich)[source]: Delete more files.
2022-07-05 13:47:12 +02:00
Lars-Dominik Braun 06493e7388
gnu: guix: Update to 1.3.0-28.c23e0aa.
Fixes a problem with the binary installer, whose guix command does not
understand manifest format 4 yet.

* gnu/packages/package-management.scm (guix): Update to 1.3.0-28.c23e0aa.
2022-07-05 11:23:21 +02:00
Nicolas Goaziou 02ca41d901
gnu: emacs-parsebib: Update to 4.1.
* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 4.1.

Fixes bug#56346.
2022-07-05 10:09:22 +02:00
Nicolas Goaziou 85bc10fdab
gnu: emacs-citar: Update to 0.9.6.
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 0.9.6.
[propagated-inputs]: Add EMACS-CITAR.
2022-07-05 09:52:51 +02:00
Marius Bakke c2ce62b6db
gnu: python-django@3.2: Update to 3.2.14 [fixes CVE-2022-34265].
* gnu/packages/django.scm (python-django-3.2): Update to 3.2.14.
2022-07-05 01:56:51 +02:00
Marius Bakke 87fcfb8365
gnu: Django: Update to 4.0.6 [fixes CVE-2022-34265].
* gnu/packages/django.scm (python-django-4.0): Update to 4.0.6.
2022-07-05 01:56:50 +02:00
Hartmut Goebel fdcd0133b2
gnu: Add trytond-stock-package-shipping-dpd.
* gnu/packages/tryton.scm (trytond-stock-package-shipping-dpd): New variable.
2022-07-04 16:10:53 +02:00
Hartmut Goebel c8f49e5c70
gnu: Add trytond-google-maps.
* gnu/packages/tryton.scm (trytond-google-maps): New variable.
2022-07-04 16:10:53 +02:00
Hartmut Goebel d0326574f8
gnu: Add trytond-gis.
* gnu/packages/tryton.scm (trytond-gis): New variable.
2022-07-04 16:10:52 +02:00
Hartmut Goebel bc6780ee9a
gnu: Add python-geomet.
* gnu/packages/python-xyz.scm (python-geomet): New variable.
2022-07-04 16:10:51 +02:00
Nicolas Goaziou 477e561a46
gnu: emacs-emms-print-metadata: Improve package style.
* gnu/packages/emacs-xyz.scm (emacs-emms-print-metadata)[arguments]: Use G-expressions.
2022-07-04 15:37:31 +02:00
Nicolas Goaziou 97be378dae
gnu: emacs-emms: Update to 11.
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 11.
2022-07-04 15:36:17 +02:00
Nicolas Goaziou 44b832d719
gnu: emacs-rg: Improve package style.
* gnu/packages/emacs-xyz.scm (emacs-rg)[arguments]: Use G-expressions and MAKE-FILE-WRITABLE.
2022-07-04 15:33:15 +02:00
Nicolas Goaziou 30f8183b9a
gnu: emacs-rg: Update to 2.2.1.
* gnu/packages/emacs-xyz.scm (emacs-rg): Update to 2.2.1.
2022-07-04 15:32:34 +02:00
Nicolas Goaziou e5b3349128
gnu: fsearch: Update to 0.1.3.
* gnu/packages/search.scm (fsearch): Update to 0.1.3.
2022-07-04 15:31:08 +02:00
Nicolas Goaziou 942dcd30c4
gnu: manuskript: Update package style.
* gnu/packages/text-editors.scm (manuskript)[arguments]: Use
G-expressions. Remove trailing #T.
2022-07-04 15:28:07 +02:00
Nicolas Goaziou ba2d504939
gnu: manuskript: Update to 0.14.0.
* gnu/packages/text-editors.scm (manuskript): Update to 0.14.0.
2022-07-04 15:25:14 +02:00
Nicolas Goaziou c0f6287974
gnu: nauty: Update package style.
* gnu/packages/maths.scm (nauty)[arguments]: Use G-expressions. Remove
trailing #T.
2022-07-04 15:22:03 +02:00
Nicolas Goaziou c3a2d354e3
gnu: nauty: Update to 2.7r4.
* gnu/packages/maths.scm (nauty): Update to 2.7r4.
2022-07-04 15:19:11 +02:00
Nicolas Goaziou f5758b36da
gnu: tlpui: Use G-expressions.
* gnu/packages/linux.scm (tlpui)[arguments]: Use G-expressions.
2022-07-04 15:11:39 +02:00
Nicolas Goaziou 16c2372fe8
gnu: tlpui: Honor TESTS?.
* gnu/packages/linux.scm (tlpui)[arguments]<#:phases>: Honor TESTS? in CHECK
phase.
2022-07-04 15:08:36 +02:00
Nicolas Goaziou 56892af033
gnu: tlpui: Update to 1.5.0-1.
* gnu/packages/linux.scm (tlpui): Update to 1.5.0-1.
2022-07-04 15:07:54 +02:00
Pierre Neidhardt 741a5ec00a
gnu: emacs-sly-stepper: Update to 20220704.
* gnu/packages/emacs-xyz.scm (emacs-sly-stepper): Update to 20220704.
2022-07-04 14:52:24 +02:00
Ricardo Wurmus a0125732ef
gnu: Add r-sccustomize.
* gnu/packages/bioinformatics.scm (r-sccustomize): New variable.
2022-07-04 13:48:58 +02:00
Ricardo Wurmus 602cf66c79
gnu: Add r-dittoseq.
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
2022-07-04 13:48:58 +02:00
Ricardo Wurmus e05f62bf6a
gnu: Add r-ggprism.
* gnu/packages/cran.scm (r-ggprism): New variable.
2022-07-04 13:48:58 +02:00
Ricardo Wurmus cbfcff5961
gnu: Add r-ggrastr.
* gnu/packages/cran.scm (r-ggrastr): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 4aee04819e
gnu: Add r-janitor.
* gnu/packages/cran.scm (r-janitor): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 12d206901a
gnu: Add r-paletteer.
* gnu/packages/cran.scm (r-paletteer): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 9c58c87aa9
gnu: Add r-prismatic.
* gnu/packages/cran.scm (r-prismatic): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 738e4eea14
gnu: Add r-colorway.
* gnu/packages/statistics.scm (r-colorway): New variable.
2022-07-04 13:48:57 +02:00
Jean-Pierre De Jesus DIAZ 31e4eaf52c
gnu: vpnc: Add bsd-2 license.
* gnu/packages/vpn.scm (vpnc)[license]: Add bsd-2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Jean-Pierre De Jesus DIAZ bb88505ee8
gnu: vpnc: Fix cross-compilation.
* gnu/packages/vpn.scm (vpnc): Fix cross-compilation.
  [native-inputs]: Add conditional input of `this-package' (vpnc)
  to reuse the man page and add `pkg-config'.
  [arguments]: Use G-Expressions.
  [arguments]: Make use of `make-flags' instead of using substitutions.
  [arguments]: Remove unneeded deletion of `configure'.
  [arguments]: Use `pkg-config' to search for libgcrypt.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Sharlatan Hellseher e8e7b4cdae
gnu: Add giza
* gnu/packages/maths.scm (giza): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao 84d413d2fd
gnu: solidity: Update to 0.8.15.
* gnu/packages/solidity.scm (solidity): Update to 0.8.15.
[source]: Use Github release.
[arguments]<#:phases>: Remove phase 'create-commit_hash.txt'.
Restore phase 'configure' and phase 'install'.
Remove modifications applied to the phase 'build' and phase 'check'.
Add phase 'unbundle-3rd-party-dependencies'.
[inputs]: Add fmt-for-solidity, range-v3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao b49c2e558d
gnu: Add fmt-for-solidity.
* gnu/packages/pretty-print.scm (fmt-for-solidity): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao da6ea4ab88
gnu: solidity: Use G-expressions.
* gnu/packages/solidity.scm (solidity)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao 0e64835b2e
gnu: z3: Prefer CMake to build the package.
Z3 developer recommends to use CMake to build Z3 except the OCaml bindings.
Use CMake also enable us to cross compile z3.

* gnu/packages/maths.scm (z3)[build-system]: Use cmake-build-system.
[arguments]<#:configure-flags>: Add flags for CMake.
<#:phases>: Remove stale phase 'fix-compatability'.
In phase 'check', build the z3 test binary and don't test when cross
compiling.
Add phase 'compile-python-modules' phase to generate python bytecode cache for
z3 python binding.
Add phase 'fix-z3-library-path' to help z3 pythong binding to find the z3
shared library.

(ocaml-z3)[build-system]: Override the inherited value with 'gnu-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:04 +02:00
Zhu Zihao cec5142183
gnu: z3: Update to 4.8.17.
* gnu/packages/maths.scm (z3): Update to 4.8.17.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:04 +02:00
Zhu Zihao 3366be5db0
gnu: z3: Use G-expressions.
* gnu/packages/maths.scm (z3)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:04 +02:00
Pierre Neidhardt 7cddd130df
gnu: sbcl-nkeymaps: Update to 1.0.0.
* gnu/packages/lisp-xyz.scm (sbcl-nkeymaps): Update to 1.0.0.
2022-07-04 11:03:06 +02:00
Efraim Flashner b56dad9b2c
gnu: tbb: Fix building on riscv64-linux.
* gnu/packages/tbb.scm (tbb)[source]: Add patch.
* gnu/packages/patches/tbb-other-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-07-04 11:14:41 +03:00
Leo Famulari 4d126e7762
gnu: linux-libre 4.9: Update to 4.9.321.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.321.
(linux-libre-4.9-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari 2a9e397043
gnu: linux-libre 4.14: Update to 4.14.286.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.286.
(linux-libre-4.14-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari a2e56e6a1c
gnu: linux-libre 4.19: Update to 4.19.250.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.250.
(linux-libre-4.19-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari 71281783fc
gnu: linux-libre 5.4: Update to 5.4.203.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.203.
(linux-libre-5.4-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari 004be75424
gnu: linux-libre 5.10: Update to 5.10.128.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.128.
(linux-libre-5.10-pristine-source): Update hash.
2022-07-03 23:56:13 -04:00
Leo Famulari 5df7a33af7
gnu: linux-libre 5.15: Update to 5.15.52.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.52.
(linux-libre-5.15-pristine-source): Update hash.
2022-07-03 23:56:13 -04:00
Leo Famulari 9cd92b259b
gnu: linux-libre: Update to 5.18.9.
* gnu/packages/linux.scm (linux-libre-5.18-version): Update to 5.18.9.
(linux-libre-5.18-pristine-source): Update hash.
2022-07-03 23:56:13 -04:00
Raghav Gururajan a78d101eb3
gnu: bitmask: Fix loading of GUI.
* gnu/packages/vpn.scm (bitmask)[inputs]: Add qtgraphicaleffects.
2022-07-03 21:59:20 -04:00
Christopher Baines e069de452a
services: guix-build-coordinator: Fix passing parallel-hooks.
The previous approach didn't support a simple alist.

* gnu/services/guix.scm (make-guix-build-coordinator-start-script): Fix
passing parallel-hooks in to the start gexp.
2022-07-03 20:38:09 +01:00
Christopher Baines 430848c6bd
gnu: guix-build-coordinator: Update to 0-56.290ba67.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-56.290ba67.
2022-07-03 20:38:04 +01:00
Pierre Neidhardt f59f9afdb8
gnu: sbcl-nfiles: Update to 1.0.0.
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 1.0.0.
2022-07-03 20:39:06 +02:00
Pierre Neidhardt 875e803e60
gnu: abcl: Update to 1.9.0.
* gnu/packages/java.scm (abcl): Update to 1.9.0.
* gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0.
2022-07-03 20:36:48 +02:00
Pierre Neidhardt 3a45cc634e
gnu: abcl: Fix loading of cl-* packages.
* gnu/packages/java.scm (abcl)[native-search-paths]: Add XDG_DATA_DIRS where
to cl-* libraries get installed.
2022-07-03 20:36:48 +02:00
Pierre Neidhardt 13cc3da6b6
gnu: libfixposix: Add C_INCLUDE_PATH to the native-search-paths.
* gnu/packages/c.scm (libfixposix)[native-search-paths]: Add C_INCLUDE_PATH.

This fixes the loading of cl-iolib among others.
2022-07-03 20:36:47 +02:00
Liliana Marie Prikler eb44b1f304
gnu: renpy: Install sdk-fonts.
Without these fonts, the launcher will fail to launch.

* gnu/packages/game-development.scm (renpy)[install]: Also recursively copy
sdk-fonts.
2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 65c9ecce2a
gnu: python-renpy: Update to 8.0.0.
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.0.
[source]: Revert back to url-fetch.  Also patch module/setup.py to not refer
to missing sources.
2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 4cd5f03088
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.0.
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.0.0.
[source]: Revert to url-fetch.
Also add back the snippet to remove generated sources.
2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 3e987cf521
gnu: Add font-artifika.
* gnu/packages/fonts.scm (font-artifika): New variable.
2022-07-03 17:07:09 +02:00
r0man b4815e570d
gnu: Add Climate Data Operators.
* gnu/packages/geo.scm (cdo): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
Antero Mejr 486251d440
gnu: Add python-deepdish.
* gnu/packages/python-science.scm (python-deepdish): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
Artyom V. Poptsov 91a5176538
gnu: Add utest-h.
* gnu/packages/c.scm (utest-h): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
Ludovic Courtès 9dfe5142bd
gnu: solidity: Remove input labels.
* gnu/packages/solidity.scm (solidity)[native-inputs]: Remove labels.
2022-07-03 16:04:22 +02:00
Pierre Neidhardt bee129a806
gnu: sbcl-fof: Also build the fof/mf subsystem.
* gnu/packages/lisp-xyz.scm (sbcl-fof)[arguments]: Also build the fof/mf subsystem.
[inputs]: Add sbcl-cl-json.
2022-07-03 14:21:02 +02:00
Ricardo Wurmus cba98b58bf
services: Add anonip-service-type.
* gnu/services/web.scm (anonip-configuration): New record type.
(anonip-configuration?, anonip-configuration-anonip,
anonip-configuration-input, anonip-configuration-output,
anonip-configuration-skip-private?, anonip-configuration-column,
anonip-configuration-replacement, anonip-configuration-ipv4mask,
anonip-configuration-ipv6mask, anonip-configuration-increment,
anonip-configuration-delimiter, anonip-configuration-regex): New procedures.
(anonip-service-type): New service type.
* doc/guix.texi (Log Rotation): Add subheading for Anonip Service.
2022-07-03 14:12:32 +02:00
Guillaume Le Vaillant e0d2f8164e
gnu: sbcl: Disable SB-SIMD module.
SB-SIMD gets enabled only on x86_64 CPUs supporting AVX2 instructions,
and some x86_64 CPUs don't.

Fixes <https://issues.guix.gnu.org/56353>.
Reported by Wensheng Xie <xiewensheng@hotmail.com>.

* gnu/packages/lisp.scm (sbcl)[arguments]: Disable SB-SIMD in the 'build' and
  'build-doc' phases.
2022-07-03 12:07:31 +02:00
Trevor Richards f89b581148
gnu: nim: Update to 1.6.6.
* gnu/packages/nim.scm (nim): Updated to 1.6.6.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-03 10:12:24 +01:00
Christopher Baines 12787d532f
gnu: propeller-binutils: Remove source patches.
None of the patches seem to apply. The patches that are not used with binutils
are probably too new for the specific commit used here, and the patches that
were once applied have probably been removed, so just don't apply any patches.

* gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that
don't apply.
2022-07-03 10:11:24 +01:00
Christopher Baines 207ef8758e
gnu: java-xpp3: Download source from ci.guix.gnu.org.
The www.extreme.indiana.edu site is now serving a redirect:

  This site has been deprecated. You can access an archive of this site at
  https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/.

Because this isn't a 404, as it probably should be, guix follows this redirect
and gets some content that isn't the file it asked for.

To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for
the file instead.

* gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org.
2022-07-03 10:11:24 +01:00
Efraim Flashner c145e51844
gnu: curl: Skip failing test on 32-bit architectures.
* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom
'skip-failing-tests phase on all 32-bit architectures.
2022-07-03 10:07:46 +03:00
Efraim Flashner 89fe091bb4
gnu: curl: Fix build on some systems.
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around
implicit function declaration.
* gnu/packages/patches/curl-easy-lock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-07-03 10:07:38 +03:00
muradm cec5a522e1
gnu: Add sqls 0.2.18.
* gnu/packages/databases (sqls): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:07 +02:00
muradm eed4494da7
gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0.
* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:07 +02:00
muradm 9b6226bcda
gnu: Add go-github-com-gorilla-websocket 1.5.0.
* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:06 +02:00
Ricardo Wurmus 4745be8514
gnu: r-ifultools: Patch in removed macros to fix build.
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility
macros.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus a0142125e6
gnu: r-with-tests: Update to 4.2.1.
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 3bb39fc370
gnu: r-tcgabiolinks: Update to 2.24.3.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus af06365a3e
gnu: r-bionetstat: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 26981da96b
gnu: r-bgeedb: Update to 2.22.3.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 5f03154c15
gnu: r-ggbio: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 11f30bfa3d
gnu: r-rsubread: Update to 2.10.4.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 0a5a06ed24
gnu: r-biosigner: Update to 1.24.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus fbb6489abd
gnu: r-ropls: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 4aabb20226
gnu: r-genomicscores: Update to 2.8.2.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus b7a5534e61
gnu: r-clusterprofiler: Update to 4.4.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus a17b7aabfd
gnu: r-batchelor: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 7ff0669cee
gnu: r-matrixgenerics: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 605eda07df
gnu: r-zellkonverter: Update to 1.6.3.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus febec55f57
gnu: r-simplifyenrichment: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus c4113d3035
gnu: r-rtracklayer: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 5298b57d56
gnu: r-organismdbi: Update to 1.38.1.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 4e6026031a
gnu: r-limma: Update to 3.52.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 103d4d918f
gnu: r-ensembldb: Update to 2.20.2.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 5888776c87
gnu: r-gld: Update to 2.6.5.
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 1f6de97557
gnu: r-clubsandwich: Update to 0.5.7.
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus f6c9920f62
gnu: r-ranger: Update to 0.14.1.
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 9360df02d1
gnu: r-car: Update to 3.1-0.
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 2998060a53
gnu: r-gtools: Update to 3.9.2.2.
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus e9f9791b14
gnu: r-r-rsp: Update to 0.45.0.
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 7d7712c9a0
gnu: r-r-utils: Update to 2.12.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus c37911f090
gnu: r-r-methodss3: Update to 1.8.2.
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus eae36e7aed
gnu: r-rcpparmadillo: Update to 0.11.2.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus a12211cd93
gnu: r-dbplyr: Update to 2.2.1.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1.
2022-07-02 23:56:08 +02:00