a4d34da18b
gnu: rust-ordered-float: Add 3.4.0.
...
* gnu/packages/crates-io.scm (rust-ordered-float-3): New variable.
(rust-ordered-float-2): Inherit from it.
2022-12-02 22:44:28 +01:00
54790cc0aa
gnu: Add rust-speedy.
...
* gnu/packages/crates-io.scm (rust-speedy-0.8, rust-speedy-derive-0.8): New
variables.
2022-12-02 22:44:28 +01:00
8fb4ba8762
gnu: rust-rkyv: Add 0.7.39.
...
* gnu/packages/crates-io.scm (rust-rkyv-0.7, rust-rkyv-derive-0.7): New
variables.
(rust-rkyv-0.6, rust-rkyv-derive-0.6): Inherit accordingly.
2022-12-02 22:44:28 +01:00
a756713eee
gnu: Add rust-rend.
...
* gnu/packages/crates-io.scm (rust-rend-0.3): New variable.
2022-12-02 22:44:28 +01:00
08e9b520ad
gnu: rust-bytecheck: Add 0.6.9.
...
* gnu/packages/crates-io.scm (rust-bytecheck-0.6, rust-bytecheck-derive-0.6):
New variables.
(rust-bytecheck-0.5, rust-bytecheck-derive-0.5): Inherit accordingly.
2022-12-02 22:44:28 +01:00
c72d55a41f
gnu: rust-uuid: Add 1.2.2.
...
* gnu/packages/crates-io.scm (rust-uuid-1): New variable.
(rust-uuid-0.8): Inherit from it.
2022-12-02 22:44:27 +01:00
1535e81095
gnu: rust-bytemuck: Update to 1.12.3.
...
* gnu/packages/crates-io.scm (rust-bytemuck-1): Update to 1.12.3.
(rust-bytemuck-1.5): Remove variable.
(rust-glam-0.17, rust-glam-0.16, rust-glam-0.15, rust-glam-0.14,
rust-glam-0.13, rust-nalgebra-0.26)[arguments]: Change from RUST-BYTEMUCK-1.15
to RUST-BYTEMUCK-1.
2022-12-02 22:44:27 +01:00
303ef489a1
gnu: rust-bytemuck-derive: Update to 1.3.0.
...
* gnu/packages/crates-io.scm (rust-bytemuck-derive-1): Update to 1.3.0.
2022-12-02 22:44:27 +01:00
d64e4ad910
gnu: rust-typenum: Update to 1.15.0.
...
* gnu/packages/crates-io.scm (rust-typenum-1): Update to 1.15.0.
[arguments]: Add RUST-SCALE-INFO-1 to #:cargo-inputs.
2022-12-02 22:44:27 +01:00
4f427b2e59
gnu: rust-const-oid: Add 0.9.1.
...
* gnu/packages/crates-io.scm (rust-const-oid-0.9): New variable.
(rust-const-oid-0.6): Inherit from it.
2022-12-02 22:44:27 +01:00
6187b7de44
gnu: rust-cookie: Move versions closer together.
...
* gnu/packages/crates-io.scm (rust-cookie-0.15): Move above other cookies.
(rust-cookie-0.12): Inherit from it.
2022-12-02 22:44:27 +01:00
9202eda3b2
gnu: rust-crypto-common: Update to 0.1.6.
...
* gnu/packages/crates-io.scm (rust-crypto-common-0.1): Update to 0.1.6.
[arguments]: Add RUST-TYPENUM to #:cargo-inputs.
2022-12-02 22:44:06 +01:00
92c5f39204
gnu: Add rust-uuid-macro-internal.
...
* gnu/packages/crates-io.scm (rust-uuid-macro-internal): New variable.
2022-12-02 22:44:06 +01:00
ad1c35b332
gnu: rust-tinyvec: Update to 1.6.0.
...
* gnu/packages/crates-io.scm (rust-tinyvec-1): Update to 1.6.0.
[arguments]: Add RUST-ARBITRARY-1 to #:cargo-inputs.
2022-12-02 22:44:06 +01:00
0de1599c98
gnu: rust-arbitrary: Update to 1.2.0.
...
* gnu/packages/crates-io.scm (rust-arbitrary-1, rust-derive-arbitrary-1):
Update to 1.2.0.
2022-12-02 22:44:06 +01:00
042ce76caf
gnu: rust-xcb: Add 1.2.0.
...
* gnu/packages/crates-io.scm (rust-xcb-1): New variable.
(rust-xcb-0.9): Inherit from it.
2022-12-02 22:44:05 +01:00
c3407d52b4
gnu: rust-x11: Update to 2.20.1.
...
* gnu/packages/crates-graphics.scm (rust-x11-2): Update to 2.20.1.
[propagated-inputs]: Add MESA.
2022-12-02 22:44:05 +01:00
b4f5b54703
gnu: rust-pkg-config: Update to 0.3.26.
...
* gnu/packages/crates-io.scm (rust-pkg-config-0.3): Update to 0.3.26.
2022-12-02 22:44:05 +01:00
e5455bef85
Merge branch 'master' into staging
2022-12-02 22:42:47 +01:00
51d6bd3507
gnu: Add rust-k9.
...
* gnu/packages/crates-io.scm (rust-k9-0.11): New variable.
2022-12-02 22:21:42 +01:00
3c5cbd3c9d
gnu: rust-digest: Update to 0.10.6.
...
* gnu/packages/crates-io.scm (rust-digest-0.10): Update to 0.10.6.
2022-12-02 22:21:42 +01:00
2066ae53f1
gnu: QtWebEngine: Use more system libraries.
...
* gnu/packages/qt.scm (qtwebengine)[source](snippet): Remove more files.
[arguments]: Pass QT_FEATURES_system_foo for all supported libraries.
[inputs]: Replace "harfbuzz" with HARFBUZZ-5.
2022-12-02 22:21:42 +01:00
fd44d489b5
gnu: python-biom-format: Update to 2.1.12.
...
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.12.
[arguments]: Remove "relax" phase; update "disable-broken-tests" phase.
[propagated-inputs]: Add python-scikit-bio.
2022-12-02 21:46:36 +01:00
b93e21a213
gnu: Add python-scikit-bio.
...
* gnu/packages/bioinformatics.scm (python-scikit-bio): New variable.
2022-12-02 21:46:36 +01:00
b2a9feab92
gnu: Add python-hdmedians.
...
* gnu/packages/statistics.scm (python-hdmedians): New variable.
2022-12-02 21:46:36 +01:00
62da3f9837
gnu: python-pairtools: Update to 1.0.2.
...
* gnu/packages/bioinformatics.scm (python-pairtools): Update to 1.0.2.
[source]: Update Github URL.
[arguments]: Update patch in "fix-references" phase.
[native-inputs]: Remove python-nose.
[inputs]: Remove.
[propagated-inputs]: Add python-bioframe, python-pandas, python-pysam,
python-pyyaml, and python-scipy.
[home-page]: Update.
2022-12-02 21:46:36 +01:00
089b2e4f65
gnu: python-pairtools: Run tests conditionally.
...
* gnu/packages/bioinformatics.scm (python-pairtools)[arguments]: Run tests
conditionally.
2022-12-02 21:46:36 +01:00
631ea9a411
gnu: python-pybedtools: Use pyproject-build-system.
...
* gnu/packages/bioinformatics.scm (python-pybedtools)[build-system]: Use
pyproject-build-system.
[arguments]: Import (guix build pyproject-build-system).
2022-12-02 21:46:36 +01:00
a268b1ba91
gnu: python-htsget: Update to 0.2.6.
...
* gnu/packages/bioinformatics.scm (python-htsget): Update to 0.2.6.
[build-system]: Use pyproject-build-system.
2022-12-02 21:46:35 +01:00
16ecce39d2
gnu: python-cellbender: Update to 0.2.2.
...
* gnu/packages/bioinformatics.scm (python-cellbender): Update to 0.2.2.
[build-system]: Use pyproject-build-system.
2022-12-02 21:46:35 +01:00
f2b6350a50
Merge branch 'master' into staging
2022-12-02 19:13:45 +01:00
365b0b5533
gnu: ungoogled-chromium: Use git tag in ungoogled origin.
...
* gnu/packages/chromium.scm (%ungoogled-origin)[uri]: Use %UNGOOGLED-REVISION
instead of commit identifier.
2022-12-02 19:10:51 +01:00
11b0670a9d
gnu: kicad: Remove obsolete phases.
...
* gnu/packages/engineering.scm (kicad)[arguments]: Remove two phases.
2022-12-02 19:08:27 +01:00
ea0e6e5d65
gnu: golly: Update to 4.2.
...
* gnu/packages/games.scm (golly): Update to 4.2.
[arguments]: Remove configure phase.
[inputs]: Remove PYTHON-2 and WXWIDGETS-GTK2. Add PYTHON, SDL2, and
WXWIDGETS. Remove labels while at it.
2022-12-02 19:08:27 +01:00
6aac95ae2b
gnu: python-wxpython: Update to 4.2.0.
...
* gnu/packages/wxwidgets.scm (python-wxpython): Update to 4.2.0.
[propagated-inputs]: Add PYTHON-ATTRDICT.
2022-12-02 19:08:27 +01:00
f16358144f
gnu: wxWidgets: Update to 3.2.1.
...
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.2.1.
[source](modules, snippet): New fields.
[inputs]: Remove SDL. Add CATCH-FRAMEWORK, EXPAT, GSTREAMER,
GST-PLUGINS-BASE, LIBNOTIFY, LIBPNG, LIBSECRET, PCRE, SDL2,
WEBKITGTK-WITH-LIBSOUP2, and ZLIB
[arguments]: Add "--enable-mediactrl" and "--enable-gui" to #:configure-flags.
Remove aarch64 workaround. Install catch header in refer-to-inputs phase.
Add phase to adjust WebKitGTK version.
(wxwidgets-3.1, wxwidgets-gtk2-3.1): Remove variables.
(wxwidgets-3.0, (wxwidgets-gtk2-3.0): New variables.
(wxsvg)[inputs]: Change from WXWIDGETS-3.1 to WXWIDGETS.
* gnu/packages/audio.scm (audacity)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/astronomy.scm (imppg)[inputs]: Change from WXWIDGETS to
WXWIDGETS-3.0.
* gnu/packages/ftp.scm (filezilla)[inputs]: Likewise.
* gnu/packages/games.scm (megaglest)[inputs]: Likewise.
* gnu/packages/geo.scm (opencpn)[inputs]: Likewise.
* gnu/packages/music.scm (sooperlooper)[inputs]: Likewise.
* gnu/packages/engineering.scm (kicad)[arguments]: Enable EGL support.
2022-12-02 19:08:27 +01:00
8737ee0479
gnu: wxWidgets: Remove input labels.
...
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove labels.
[arguments]: Use SEARCH-INPUT-FILE.
(wxwidgets-gtk2)[inputs]: Use MODIFY-INPUTS.
2022-12-02 19:08:27 +01:00
2cf835ae28
gnu: jucipp: Update to 1.7.2.
...
* gnu/packages/text-editors.scm (jucipp): Update to 1.7.2.
[arguments]: Skip one more test.
2022-12-02 19:08:26 +01:00
fa3dac025a
gnu: universal-ctags: Update to 5.9.20221127.0.
...
* gnu/packages/code.scm (universal-ctags): Update to 5.9.20221127.0.
2022-12-02 19:08:26 +01:00
62ddd3bc80
gnu: Add python-fanc.
...
* gnu/packages/bioinformatics.scm (python-fanc): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2022-12-02 17:43:20 +01:00
ee069ec651
gnu: Add python-genomic-regions.
...
* gnu/packages/bioinformatics.scm (python-genomic-regions): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2022-12-02 17:20:54 +01:00
9ddc4e5b03
gnu: python-msgpack-numpy: Update to 0.4.8.
...
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
2022-12-02 15:04:15 +01:00
0c2dad9951
gnu: Add python-pybloom-live.
...
* gnu/packages/python-xyz.scm (python-pybloom-live): New variable.
2022-12-02 15:03:00 +01:00
840d543939
gnu: python-xxhash: Update to 3.1.0.
...
* gnu/packages/digest.scm (python-xxhash): Update to 3.1.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools-scm.
2022-12-02 15:03:00 +01:00
4781f0458d
Revert "gnu: linux-libre: Move info manual to doc output."
...
This reverts commit 748ec62882
2022-12-01 21:37:12 -05:00
2775bb95c7
gnu: ungoogled-chromium: Update to 108.0.5359.71-1.
...
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M108.
(%chromium-version): Set to 108.0.5359.71-1.
(%arch-revision): Bump to newer commit.
(%ungoogled-origin): Update hash.
(%gcc-patches): Remove.
(%reverse-patches): Remove one patch.
(%arch-patches): New variable.
(%patches): New variable.
(ungoogled-chromium-snippet): Apply %PATCHES instead of individual variables.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Adjust configure flag.
[inputs]: Change from HARFBUZZ-3 to HARFBUZZ-5.
2022-12-02 00:21:25 +01:00
503fb0dcb4
gnu: ungoogled-chromium: Generalize OpenJPEG substitution.
...
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Don't hard code
openjpeg version.
2022-12-02 00:21:25 +01:00
1a8d063a44
gnu: harfbuzz: Add 5.3.1.
...
* gnu/packages/gtk.scm (harfbuzz-5): New variable.
2022-12-02 00:21:25 +01:00
c091339204
gnu: balsa: Update to 2.6.4.
...
* gnu/packages/mail.scm (balsa): Update to 2.6.4.
2022-12-02 00:21:25 +01:00
dee7c94b59
gnu: balsa: Add release-monitoring-url.
...
* gnu/packages/mail.scm (balsa)[properties]: New field.
2022-12-02 00:21:25 +01:00
Marius Bakke
Ricardo Wurmus
Navid Afkhami
Maxim Cournoyer