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11690 Commits (a78daf5e2bdd8e0b958d679c442d0f122a7d68cd)

Author SHA1 Message Date
Ricardo Wurmus e4785eb816 gnu: Add r-nnet. 
* gnu/packages/machine-learning.scm (r-nnet): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 07f911bab7 gnu: Add r-igraph. 
* gnu/packages/statistics.scm (r-igraph): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b783ff7833 gnu: Add r-nmf. 
* gnu/packages/statistics.scm (r-nmf): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 790034bd23 gnu: Add r-rngtools. 
* gnu/packages/statistics.scm (r-rngtools): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 2d0f7d80bf gnu: Add r-registry. 
* gnu/packages/statistics.scm (r-registry): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 3a6607f00b gnu: Add r-pkgmaker. 
* gnu/packages/statistics.scm (r-pkgmaker): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus dada39aaed gnu: Add r-irlba. 
* gnu/packages/statistics.scm (r-irlba): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b20abbcd74 gnu: Add r-latticeextra. 
* gnu/packages/statistics.scm (r-latticeextra): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus a73f4cd18b gnu: Add r-xtable. 
* gnu/packages/statistics.scm (r-xtable): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 97ee973daa gnu: Add r-locfit. 
* gnu/packages/statistics.scm (r-locfit): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b1acb44573 gnu: Add r-formula. 
* gnu/packages/statistics.scm (r-formula): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 0837dd0737 gnu: Add r-foreign. 
* gnu/packages/statistics.scm (r-foreign): New variable.
 2016-04-14 14:53:30 +02:00
Ricardo Wurmus 0926b8779f gnu: Add r-cluster. 
* gnu/packages/statistics.scm (r-cluster): New variable.
 2016-04-14 14:53:30 +02:00
Ricardo Wurmus b4d6f4089f gnu: Add r-acepack. 
* gnu/packages/statistics.scm (r-acepack): New variable.
 2016-04-14 14:53:30 +02:00
Ludovic Courtès a2d0e2003f gnu: hwloc: Update to 1.11.2. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.2.  Change URLs to https.
 2016-04-14 10:20:14 +02:00
Danny Milosavljevic 013c3fb8c7 lint: Emit an ANSI erase-in-line sequence. 
* guix/scripts/lint.scm (run-checkers): Add '\x1b[K' to progress
messages and after 'for-each'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-14 10:20:14 +02:00
Alex Kost fc1adab148 gnu: packages: Use 'search-patches' everywhere. 
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
 2016-04-14 10:38:21 +03:00
Alex Kost 25897079a2 packages: Add 'search-patches'. 
* gnu/packages.scm (search-patches): New macro.
 2016-04-14 10:36:11 +03:00
Alex Kost 82fd23b81f download: Follow HTTP 307 "Temporary Redirection". 
Fixes <http://bugs.gnu.org/23275>.
Reported by Albin Söderqvist <albin@fripost.org>.

* guix/build/download.scm (http-fetch): Follow redirections upon 307.
  This is what 'binaries.openttd.org' does.
 2016-04-14 10:34:37 +03:00
Alex Kost 5c93de7337 gnu: Add maim. 
* gnu/packages/xdisorg.scm (maim): New variable.
 2016-04-14 10:32:56 +03:00
Alex Kost 9f1d33be33 gnu: Add slop. 
* gnu/packages/xdisorg.scm (slop): New variable.
 2016-04-14 10:32:56 +03:00
Mark H Weaver 557a2503bc gnu: linux-libre-4.4: Update to 4.4.7. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.7.
 2016-04-13 21:01:16 -04:00
Mark H Weaver f7cfd80fc6 gnu: linux-libre: Update to 4.5.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.1.
 2016-04-13 21:01:16 -04:00
Raymond Nicholson 58f738a1c8 gnu: pcmanfm, libfm: Update to 1.2.4. 
* gnu/packages/lxde.scm (pcmanfm): Update to 1.2.4.
* gnu/packages/lxde.scm (libfm): Update to 1.2.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-13 20:46:14 -04:00
Ricardo Wurmus b0cf3d0fed gnu: qsynth: Update to 0.4.1. 
* gnu/packages/audio.scm (qsynth): Update to 0.4.1.
 2016-04-13 21:34:41 +02:00
Nicolas Goaziou 57497c5753 gnu: Add giac-xcas. 
* gnu/packages/algebra.scm (giac-xcas): New variable.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
 2016-04-13 19:52:33 +02:00
Nicolas Goaziou 61bb355532 gnu: Add mpfi. 
* gnu/packages/multiprecision.scm (mpfi): New variable.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
 2016-04-13 19:52:33 +02:00
Ludovic Courtès 89cbec89a5 hydra: Add 'hydra-jobs.scm' target to compute the Hydra jobs. 
* build-aux/hydra/evaluate.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
 2016-04-13 19:20:03 +02:00
Ludovic Courtès 9c3bb4c54d hydra: Really completely disable grafting. 
This is a followup to 49c4fd2a.

* build-aux/hydra/gnu-system.scm (package->alist): Parameterize %graft?.
(qemu-jobs)[->job]: Likewise.
(tarball-jobs)[->job]: Likewise.
 2016-04-13 19:20:03 +02:00
David Thompson 0de9813905 gnu: geda-gaf: Make gsch2pcb work out-of-the-box. 
* gnu/packages/engineering.scm (geda-gaf)[inputs]: Add m4 and pcb.
[arguments]: Add configure flags that point to PCB data files.
 2016-04-13 12:08:17 -04:00
Andreas Enge 57c9c349b7 gnu: Add GMP-ECM. 
* gnu/packages/algebra.scm (gmp-ecm): New variable.
 2016-04-13 13:32:05 +02:00
Kei Yamashita dfc407f348 gnu: Add gnome-sudoku. 
* gnu/packages/gnome.scm (gnome-sudoku): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-13 14:25:51 +08:00
Kei Yamashita 966dff3b81 gnu: Add qqwing. 
* gnu/packages/game-development.scm (qqwing): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-13 14:25:51 +08:00
宋文武 2b8e9d9ed4 gnu-maintenance: update-package-source: Only update the desired package. 
Fixes <http://bugs.gnu.org/22693>.
Suggested by Andy Wingo.

* guix/upstream.scm (update-package-source): Rewrite in terms of 'edit-expression'.
 2016-04-13 09:17:01 +08:00
宋文武 f7df1e3efb utils: Add 'location->source-properties'. 
* guix/utils (location-source->properties): New procedure.
 2016-04-13 09:17:01 +08:00
宋文武 50a3d59473 utils: Add 'edit-expression'. 
* guix/utils.scm (edit-expression): New procedure.
* tests/utils.scm (edit-expression): New test.
 2016-04-13 09:16:54 +08:00
Leo Famulari 645deac326 gnu: samba: Update to 4.3.8. 
Fixes CVE-2015-5730, CVE-2016-2110, CVE-2016-2111, CVE-2016-2112,
CVE-2016-2113, CVE-2016-2114, CVE-2016-2115, CVE-2016-2118.

* gnu/packages/samba.scm (samba): Update to 4.3.8.
 2016-04-12 19:39:12 -04:00
Roel Janssen ec8c7e4734 gnu: Add r-pracma. 
* gnu/packages/maths.scm (r-pracma): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-12 14:55:10 -04:00
Christopher Allan Webber b4c400a75c gnu: Add xscreensaver. 
* gnu/packages/xdisorg.scm (xscreensaver): New variable.
 2016-04-12 10:20:13 -05:00
alírio eyng 927e176d2a gnu: fontforge: Update to 20160404. 
* gnu/packages/fontutils.scm (fontforge): Update to 20160404.
  [source](snippet): Remove tottf.c modification.  Update date strings.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2016-04-12 09:39:40 -05:00
Leo Famulari 1e7bd1ec6e gnu: abduco: Update to 0.6. 
* gnu/packages/abduco.scm (abduco): Update to 0.6.
 2016-04-12 04:48:47 -04:00
Tobias Geerinckx-Rice 5f3f3ac287 gnu: btrfs-progs: Add "static" output. 
* gnu/packages/linux.scm (btrfs-progs)[outputs]: New field.
[inputs]: Add "static" outputs of util-linux for libuuid and libblkid.
[arguments]: Add 'build-static' and 'install-static' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-11 19:46:21 -04:00
Tobias Geerinckx-Rice df887432be gnu: util-linux: Add "static" output. 
* gnu/packages/linux.scm: (util-linux)[outputs]: New field.
[arguments]: Remove "--disable-static" from #:configure-flags.
Add 'move-static-libraries' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-11 19:45:58 -04:00
Tobias Geerinckx-Rice 916627b484 gnu: btrfs-progs: Update to 4.5.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-11 19:39:57 -04:00
Leo Famulari 097e012b5a gnu: e2fsprogs: Fix misleading comment. 
* gnu/packages/linux.scm (e2fsprogs): Fix misleading comment.
 2016-04-11 19:01:38 -04:00
Leo Famulari a94d455f58 gnu: letsencrypt, python-acme: Update to 0.5.0 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.5.0.
(python-acme, python2-acme): Update to 0.5.0.
 2016-04-11 18:39:55 -04:00
Ricardo Wurmus 6dc6099853 gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3. 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
  New variable.
 2016-04-11 15:11:16 +02:00
Ricardo Wurmus 943bd6279f gnu: Add r-bsgenome-celegans-ucsc-ce6. 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): New
  variable.
 2016-04-11 15:11:16 +02:00
Ricardo Wurmus a3e9028770 gnu: Add r-bsgenome-mmusculus-ucsc-mm9. 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): New
  variable.
 2016-04-11 15:11:15 +02:00
Ricardo Wurmus ae2462f7dd gnu: Add r-motifrg. 
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
 2016-04-11 11:03:27 +02:00