e5c17b8d9d
gnu: Add r-vcd.
...
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
018cf270a3
gnu: Add r-laeken.
...
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
697e341e74
gnu: fastcap: Use texlive-tiny.
...
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
7e3aca2b78
gnu: librecad: Fix build.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
b72b42cf02
gnu: Add r-performanceanalytics.
...
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00
3699383e6f
gnu: Add r-xts.
...
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08 16:21:53 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
...
All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
88fb156288
gnu: pcb: Update to 4.0.2.
...
* gnu/packages/engineering.scm (pcb): Update to 4.0.2.
[arguments]: Add build phase "fix-check-for-display".
2017-11-08 16:21:53 +01:00
c8b38f8ea6
gnu: time: Update license.
...
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08 10:52:09 +02:00
dd00e0919f
gnu: time: Update to 1.8.
...
* gnu/packages/time.scm (time): Update to 1.8.
[arguments]: Remove custom 'configure phase.
2017-11-08 10:49:19 +02:00
12a24ee878
gnu: Add glusterfs.
...
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07 23:32:46 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
...
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
738dda8330
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07 23:32:46 +01:00
7b0569c0a9
gnu: Add r-rsofia.
...
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07 23:32:46 +01:00
c49102ecca
gnu: Add r-hitc.
...
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07 23:32:45 +01:00
30eb4e37c8
gnu: Add r-fithic.
...
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07 23:32:45 +01:00
fbf5440637
gnu: Add r-sushi.
...
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07 23:32:45 +01:00
9232cac410
gnu: Add r-vioplot.
...
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07 23:32:45 +01:00
3a22732cd8
gnu: Add r-sm.
...
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07 23:32:45 +01:00
2e4ce60e7c
gnu: Add r-gwascat.
...
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07 23:32:44 +01:00
4272000661
gnu: Add r-gviz.
...
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07 23:32:44 +01:00
794ff347a9
gnu: Add r-gqtlstats.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07 23:32:44 +01:00
7fd5f60b8f
gnu: Add r-hardyweinberg.
...
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07 23:32:44 +01:00
10e16fa93d
gnu: Add r-mice.
...
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07 23:32:44 +01:00
66c39102e5
gnu: Add r-ldblock.
...
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07 23:32:44 +01:00
15f98b0d23
gnu: Add r-erma.
...
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07 23:32:43 +01:00
421c68e3f7
gnu: Add r-homo-sapiens.
...
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07 23:32:43 +01:00
b52a866d14
gnu: Add r-org-hs-eg-db.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07 23:32:43 +01:00
dd5fc8b78e
gnu: Add r-snpstats.
...
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
2017-11-07 23:32:43 +01:00
e2b927993e
gnu: Add r-gqtlbase.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
2017-11-07 23:32:43 +01:00
96a392a0b2
gnu: Add r-gprofiler.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
2017-11-07 23:32:42 +01:00
60faf94597
gnu: Add r-ggbio.
...
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
2017-11-07 23:32:42 +01:00
7af1f40373
gnu: Add r-biovizbase.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
2017-11-07 23:32:42 +01:00
2f6f61fd8e
gnu: Add r-organismdbi.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
2017-11-07 23:32:42 +01:00
aa30ab5aee
gnu: Add r-ensembldb.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
2017-11-07 23:32:42 +01:00
763e98103a
gnu: Add r-annotationfilter.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-11-07 23:32:42 +01:00
04e2a2e969
gnu: Add r-dirichletmultinomial.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
2017-11-07 23:32:41 +01:00
3af149f524
gnu: Add r-complexheatmap.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
2017-11-07 23:32:41 +01:00
902fb15d92
gnu: Add r-genomicfiles.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
2017-11-07 23:32:41 +01:00
cd215877a0
gnu: bdftopcf: Update to 1.1.
...
* gnu/packages/xorg.scm (bdftopcf): Update to 1.1.
[native-inputs]: Change from LIBXFONT to LIBXFONT2.
2017-11-07 23:29:23 +01:00
d469bc09bd
gnu: feh: Update to 2.22.2.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.2.
2017-11-07 22:16:27 +01:00
625492ee1a
gnu: gcc-4.7: Resurrect building with gcc-5.4.0.
...
* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
2017-11-07 22:03:51 +01:00
a67f094671
gnu: Add websockify.
...
* gnu/packages/web.scm (websockify): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:56:42 +01:00
75d342ffa9
gnu: Add python-networkx2.
...
* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:17:20 +01:00
2b295f5a2f
gnu: Add python-pydot.
...
* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables.
Modified-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:03:15 +01:00
38ad27da80
gnu: mercurial: Update to 4.4.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 4.4.1.
2017-11-07 20:23:29 +01:00
4a30c1c0e2
gnu: vim: Update to 8.0.1274 [fixes CVE-2017-1000382].
...
* gnu/packages/vim.scm (vim): Update to 8.0.1274.
2017-11-07 20:21:46 +01:00
31a963fe80
gnu: notmuch: Update to 0.25.2.
...
* gnu/packages/mail.scm (notmuch): Update to 0.25.2.
2017-11-07 20:01:03 +01:00
9129804230
gnu: psm: Only use as an input on supported-systems.
...
Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07 20:41:08 +02:00
b516b78002
gnu: psm: Limit supported systems.
...
* gnu/packages/linux.scm (psm)[supported-systems]: New field, limit to
i686-linux and x86_64-linux.
2017-11-07 20:41:05 +02:00
174807b9a4
gnu: gnupg: Update to 2.2.2.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.2.
2017-11-07 19:34:29 +02:00
2f17187ff3
gnu: mediainfo: Change order of custom phases.
...
* gnu/packages/video.scm (mediainfo)[arguments]: Change to the build
directory before executing the autogen script.
2017-11-07 19:34:25 +02:00
6541673354
gnu: linux: Fix kconfig selection.
...
* gnu/packages/linux.scm (make-linux-libre): When cross-compiling,
"kconfig" field is in native-inputs variable. So config is always #f
when cross-compiling linux.
2017-11-07 18:16:02 +01:00
f4433d09a1
gnu: openmpi: Add dependency on PSM.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
7bc05ef0ac
gnu: libfabric: Add dependency on PSM.
...
* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
fd23d259cd
gnu: Add PSM.
...
* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-07 18:09:13 +01:00
63b7fbe1bb
gnu: diffoscope: Update to 88.
...
* gnu/packages/package-management.scm (diffoscope): Update to 88.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
db0164b21f
gnu: awesome: Update to 4.2.
...
* gnu/packages/wm.scm (awesome): Update to 4.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
3eda8dd614
services: gdm: Add environment variables.
...
While not an optimal solution (see comment), this makes GDM functional.
* gnu/services/xorg.scm (gdm-shepherd-service): Set PATH and XDG_DATA_DIRS
environment variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
51bc8357e8
gnu: gdm: Add configure flags for better defaults.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:configure-flags>: Add
--with-initial-vt=7 and --enable-gdm-xsession.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
950d8e5d8c
gnu: gdm: Fix config file path.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:phases>: Fix the
'pre-configure phase so that GDM finds its config file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
ad54924285
gnu: expect: Change home-page to http://expect.sourceforge.net/ .
...
* gnu/packages/tcl.scm (expect): Change home-page to
http://expect.sourceforge.net/ .
2017-11-07 18:50:46 +03:00
e160aa1f81
gnu: Add r-gage.
...
* gnu/packages/bioinformatics.scm (r-gage): New variable.
2017-11-07 12:39:51 +01:00
3121814ef1
gnu: Add r-keggrest.
...
* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
2017-11-07 12:39:51 +01:00
a9540107c6
gnu: antlr3-3.3: Prettify build phases.
...
* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
2017-11-07 12:39:50 +01:00
9ecc4c69eb
gnu: r-servr: Update to 0.8.
...
* gnu/packages/web.scm (r-servr): Update to 0.8.
2017-11-07 08:15:45 +01:00
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
baa00ee90d
gnu: r-msnbase: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
2017-11-07 08:15:44 +01:00
39d9098def
gnu: r-mutationalpatterns: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
2017-11-07 08:15:44 +01:00
14b3c71911
gnu: r-annotationhub: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
2017-11-07 08:15:44 +01:00
15ca195979
gnu: r-mzr: Remove bundled copy of boost.
...
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
2017-11-07 08:15:44 +01:00
34b9675449
gnu: r-mzr: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
2017-11-07 08:15:43 +01:00
b500dbcdef
gnu: r-mzid: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
2017-11-07 08:15:43 +01:00
eeaa6967f9
gnu: r-chipseq: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
2017-11-07 08:15:43 +01:00
158b6743dc
gnu: r-genomicfeatures: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
2017-11-07 08:15:43 +01:00
74248d22a0
gnu: Add r-rmysql.
...
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-07 08:15:43 +01:00
4dd469ef6d
gnu: r-rtracklayer: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
2017-11-07 08:15:42 +01:00
a044c7f4c4
gnu: r-biocparallel: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
2017-11-07 08:15:42 +01:00
42e11d3301
gnu: r-biomart: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
2017-11-07 08:15:42 +01:00
010ab2ffd2
gnu: r-edger: Update to 3.20.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:42 +01:00
eb3f5cc76a
gnu: r-gostats: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
2017-11-07 08:15:41 +01:00
2404cc4283
gnu: r-category: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
2017-11-07 08:15:41 +01:00
65a8cd6676
gnu: r-lubridate: Update to 1.7.1.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:41 +01:00
689edf1153
gnu: r-preprocesscore: Update to 1.40.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
2017-11-07 08:15:41 +01:00
e7f680f071
gnu: r-r-utils: Update to 2.6.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
2017-11-07 08:15:41 +01:00
ecfe98a17a
gnu: r-openssl: Update to 0.9.8.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
2017-11-07 08:15:40 +01:00
aced057fbc
gnu: r-rlang: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
2017-11-07 08:15:40 +01:00
1be0f53664
gnu: r-vsn: Update to 3.46.0.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.46.0.
[propagated-inputs]: Remove r-hexbin.
2017-11-07 08:15:40 +01:00
007424b5a5
gnu: r-motifrg: Rename input label.
...
* gnu/packages/bioinformatics.scm (r-motifrg)[propagated-inputs]:
Rename label of r-bsgenome-hsapiens-ucsc-hg19.
2017-11-07 08:15:40 +01:00
ce59d62519
gnu: r-motifrg: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.22.0.
2017-11-07 08:15:40 +01:00
98791c25c8
gnu: r-qvalue: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.10.0.
2017-11-07 08:15:39 +01:00
87fa5aface
gnu: r-fastseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-fastseq): Update to 1.24.0.
2017-11-07 08:15:39 +01:00
1567c8d91b
gnu: r-interactivedisplaybase: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.16.0.
2017-11-07 08:15:39 +01:00
0096127974
gnu: r-edaseq: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.12.0.
2017-11-07 08:15:39 +01:00
22752bef3b
gnu: r-msnid: Update to 1.11.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.11.0.
2017-11-07 08:15:38 +01:00
8140f680ad
gnu: r-deseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.30.0.
2017-11-07 08:15:38 +01:00
531e80903f
gnu: r-aroma-light: Update to 3.8.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.8.0.
2017-11-07 08:15:38 +01:00
a998c9a464
gnu: r-pcamethods: Update to 1.70.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.70.0.
2017-11-07 08:15:38 +01:00
8a8138d248
gnu: r-affyio: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.48.0.
2017-11-07 08:15:38 +01:00
dad5f83817
gnu: r-affy: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.56.0.
2017-11-07 08:15:37 +01:00
9a665dfb6f
gnu: r-protgenerics: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.10.0.
2017-11-07 08:15:37 +01:00
617700895b
gnu: r-seqlogo: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.44.0.
2017-11-07 08:15:37 +01:00
e127c918f8
gnu: r-genomation: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.10.0.
[propagated-inputs]: Remove r-rhtslib.
[inputs]: Remove zlib.
2017-11-07 08:15:37 +01:00
e6ce4bf00d
gnu: r-impute: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.52.0.
2017-11-07 08:15:37 +01:00
0f948b116b
gnu: r-seqpattern: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.10.0.
2017-11-07 08:15:36 +01:00
e67850b40d
gnu: r-bsgenome: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.46.0.
2017-11-07 08:15:36 +01:00
d13a3fea7e
gnu: r-topgo: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.0.
2017-11-07 08:15:36 +01:00
aeb73879f6
gnu: r-graph: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.56.0.
2017-11-07 08:15:36 +01:00
96fb465174
gnu: r-genomicalignments: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.0.
2017-11-07 08:15:35 +01:00
6fcbed7329
gnu: r-summarizedexperiment: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.0.
2017-11-07 08:15:35 +01:00
cb0a9a7493
gnu: r-delayedarray: Update to 0.4.1.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.4.1.
2017-11-07 08:15:35 +01:00
f8068419a6
gnu: r-rsamtools: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.30.0.
2017-11-07 08:15:35 +01:00
b719435ebb
gnu: r-biostrings: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.46.0.
2017-11-07 08:15:35 +01:00
0f8d98f294
gnu: r-annotationdbi: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.40.0.
2017-11-07 08:15:34 +01:00
ca52123611
gnu: r-biobase: Update to 2.38.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.38.0.
2017-11-07 08:15:34 +01:00
aa5c1f61f1
gnu: r-genomicranges: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.0.
2017-11-07 08:15:34 +01:00
2b6ae8bfd5
gnu: r-xvector: Update to 0.18.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.18.0.
2017-11-07 08:15:34 +01:00
f642c0e4c7
gnu: r-limma: Update to 3.34.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.0.
2017-11-07 08:15:33 +01:00
7f1bac3528
gnu: r-variantannotation: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.0.
2017-11-07 08:15:33 +01:00
8aab0235e0
gnu: r-genomeinfodb: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.14.0.
2017-11-07 08:15:33 +01:00
9e482c2069
gnu: r-iranges: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.12.0.
2017-11-07 08:15:33 +01:00
41f0f94976
gnu: r-s4vectors: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.16.0.
2017-11-07 08:15:33 +01:00
2167eafc1d
gnu: r-biocstyle: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.0.
2017-11-07 08:15:32 +01:00
3241461670
gnu: r-biocinstaller: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.28.0.
2017-11-07 08:15:32 +01:00
d61fc4e104
gnu: r-biocgenerics: Update to 0.24.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.24.0.
2017-11-07 08:15:32 +01:00
704fe4d115
gnu: r-grohmm: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.12.0.
2017-11-07 08:15:32 +01:00
843826e262
gnu: r-shortread: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.0.
2017-11-07 08:15:31 +01:00
b53755258a
gnu: r-systempiper: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.12.0.
2017-11-07 08:15:31 +01:00
9f52e53d5d
gnu: r-gseabase: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.0.
2017-11-07 08:15:31 +01:00
fad7c0c7bd
gnu: r-sva: Update to 3.26.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.26.0.
2017-11-07 08:15:31 +01:00
91e1867972
gnu: r-methylkit: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.0.
2017-11-07 08:15:31 +01:00
c126ba69db
gnu: r-copywriter: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.10.0.
2017-11-07 08:15:30 +01:00
598dacf657
gnu: r-annotationfilter: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.2.0.
2017-11-07 08:15:30 +01:00
e6b332d43b
gnu: r-rhdf5: Update to 2.22.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.22.0.
2017-11-07 08:15:30 +01:00
19e8929cbd
gnu: r-tximport: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.6.0.
2017-11-07 08:15:30 +01:00
da153b7f94
gnu: r-bamsignals: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.10.0.
2017-11-07 08:15:30 +01:00
5c18470008
gnu: r-zlibbioc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.24.0.
2017-11-07 08:15:29 +01:00
1d0263b44e
gnu: r-rhtslib: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.10.0.
2017-11-07 08:15:29 +01:00
c25154e5cb
gnu: r-rbgl: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.54.0.
2017-11-07 08:15:29 +01:00
727706ad38
gnu: r-annotationforge: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.20.0.
2017-11-07 08:15:29 +01:00
3fd010ff30
gnu: r-dexseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.0.
2017-11-07 08:15:28 +01:00
0166dc07ef
gnu: r-deseq2: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.0.
2017-11-07 08:15:28 +01:00
554fac74aa
gnu: r-genefilter: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.60.0.
2017-11-07 08:15:28 +01:00
cb4d3ff2c4
gnu: r-geneplotter: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
2d4e887dc0
gnu: r-annotate: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
94fd86e5e1
gnu: r-dnacopy: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.52.0.
2017-11-07 08:15:27 +01:00
c7782c3f1f
gnu: r-biocviews: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.46.0.
[propagated-inputs]: Remove r-knitr.
2017-11-07 08:15:27 +01:00
7373b4167a
gnu: r-bioccheck: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.14.0.
[native-inputs]: Remove which.
[propagated-inputs]: Add r-stringdist.
2017-11-07 08:15:27 +01:00
a40a04fdbb
gnu: Add r-stringdist.
...
* gnu/packages/cran.scm (r-stringdist): New variable.
2017-11-07 08:15:27 +01:00
8ca2b2b06e
gnu: r-rgraphviz: Update to 2.22.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
2017-11-07 08:15:27 +01:00
a0e4b41b40
gnu: guile-git: Update snapshot.
...
* gnu/packages/guile.scm (guile-git): Update to commit 951a32c.
2017-11-07 00:12:11 +01:00
fedde43b6d
gnu: moka-icon-theme: Fix license.
...
* gnu/packages/gnome.scm (moka-icon-theme): Add cc-by-sa4.0 to license field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
550281fb5f
gnu: moka-icon-theme: Add faba-icon-theme as propagated input.
...
* gnu/packages/gnome.scm (moka-icon-theme)[propagated-inputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
8b0e4177ee
gnu: moka-icon-theme: Simplify package definition.
...
* gnu/packages/gnome.scm (moka-icon-theme): Inherit faba-icon-theme to avoid
duplicating similar package definition.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
d935e6a12c
gnu: Add faba-icon-theme.
...
* gnu/packages/gnome.scm (faba-icon-theme): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
47bd32d98e
gnu: electrum: Update to 3.0.
...
gnu/packages/finance.scm (electrum): Update to 3.0.
[inputs]: Change to python3 inputs.
[arguments]: Remove python-2. Disable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
ea0421bbf6
gnu: Add python-jsonrpclib-pelix.
...
* gnu/packages/python.scm (python-jsonrpclib-pelix, python2-jsonrpclib-pelix):
New variables.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
96dc8f3527
packages: 'fold-packages' takes #:select? parameter.
...
* gnu/packages.scm (fold-packages): Add #:select? parameter and honor it.
2017-11-07 00:12:10 +01:00
0ad5f80982
Fix ambiguous imports.
...
* gnu/packages/ocaml.scm: Hide 'zip' from (srfi srfi-1).
* guix/git.scm: Select 'mkdir-p' from (guix build utils).
2017-11-07 00:12:10 +01:00
913027f383
gnu: nnn: Update to 1.5.
...
* gnu/packages/admin.scm (nnn): Update to 1.5.
2017-11-06 23:07:19 +02:00
6a534909fa
gnu: libuninameslist: Update to 20170807.
...
* gnu/packages/fontutils.scm (libuninameslist): Update to 20170807.
2017-11-06 23:07:13 +02:00
10b159a303
gnu: u-boot: Only install 'MLO' output if it exists.
...
* gnu/packages/bootloaders.scm (u-boot)[arguments]: Add 'MLO' to
uboot-files only if it has been built.
2017-11-06 22:54:28 +02:00
b1a3079347
system: vm: Use 2^32 - 1 as hash size.
...
* gnu/system/vm.scm (operating-system-uuid): Use 2^32 - 1 instead of
2^32 as hash size.
On some 32 bit system (ARM for example), 2^32 exceeds hash max
size (ULONG_MAX = 2^32 - 1).
2017-11-06 20:02:25 +01:00
dd208b936c
bootloaders: uboot: Add .img and MLO files to binary outputs.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Add .img and MLO files
as binary output.
2017-11-06 19:58:21 +01:00
f6948189a9
linux: Add omap2plus generic kernel.
...
* gnu/packages/linux.scm (linux-libre-arm-omap2plus): New exported variable.
2017-11-06 19:55:10 +01:00
2ac42fe51f
gnu: uboot: Fix same-arch? check.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Compare %current-system
to system associated to given triplet. Comparing a system and a triplet
didn't make sense.
2017-11-06 19:53:13 +01:00
d298e7652a
gnu: perl-test-www-mechanize-psgi: Update source uri.
...
* gnu/packages/web.scm (perl-test-www-mechanize-psgi)[source]: Update to
new source uri.
2017-11-06 20:39:45 +02:00
12c613b548
gnu: dtc: Build python bindings.
...
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Add swig.
[inputs]: Add python-2.
[arguments]: Remove 'NO_PYTHON' from make-flags, add 'SETUP_PREFIX' to
set python bindings prefix.
2017-11-06 20:39:45 +02:00
ab8757c5b1
gnu: dtc: Update to 1.4.5.
...
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.5.
[arguments]: Add NO_PYTHON flag to make-flags.
2017-11-06 20:39:45 +02:00
9371600ec8
gnu: libxres: Update to 1.2.0.
...
* gnu/packages/xorg.scm (libxres): Update to 1.2.0.
2017-11-06 20:02:45 +02:00
fd592a12e2
gnu: youtube-dl: Update to 2017.11.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.06.
2017-11-06 18:18:41 +01:00
8f4e3b95df
gnu: aria2: Update to 1.33.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.33.0.
2017-11-06 06:18:31 +02:00
08e1f38ddd
gnu: emacs-undo-tree: Parameterize source uri.
...
* gnu/packages/emacs.scm (emacs-undo-tree)[source]: Replace hard-coded
version with version parameter.
2017-11-06 06:18:26 +02:00
73cd4022d6
gnu: borg: Update to 1.1.2.
...
* gnu/packages/backup.scm (borg): Update to 1.1.2.
[arguments]: Disable another test in the 'check' phase.
2017-11-05 20:36:05 -05:00
d8799bd0df
gnu: netsurf: Update to 3.7.
...
For compatibility, dependents must be updated at the same time.
* gnu/packages/web.scm (libcss): Update to 0.7.0
(nsgenbind): Update to 0.5.
(netsurf): Update to 3.7.
[arguments]: Fix binary name in .desktop. Adjust "docs" directory name.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
2017-11-05 07:46:08 -06:00
772588bd22
gnu: libnspsl: Update to 0.1.2.
...
* gnu/packages/web.scm (libnspsl): Update to 0.1.2.
2017-11-05 07:46:08 -06:00
f379c52f27
gnu: libnsgif: Update to 0.2.0.
...
* gnu/packages/web.scm (libnsgif): Update to 0.2.0.
2017-11-05 07:46:08 -06:00
b20d97f848
gnu: libsvgtiny: Update to 0.1.6.
...
* gnu/packages/web.scm (libsvgtiny): Update to 0.1.6.
2017-11-05 07:46:08 -06:00
036f47a37e
gnu: libdom: Update to 0.3.2.
...
* gnu/packages/web.scm (libdom): Update to 0.3.2.
2017-11-05 07:46:08 -06:00
e33f6efd60
gnu: libwapcaplet: Update to 0.4.0.
...
* gnu/packages/web.scm (libwapcaplet): Update to 0.4.0.
2017-11-05 07:46:08 -06:00
84dec7a0c0
gnu: hubbub: Update to 0.3.4.
...
* gnu/packages/web.scm (hubbub): Update to 0.3.4.
2017-11-05 07:46:07 -06:00
bf56082605
gnu: netsurf-buildsystem: Update to 1.6.
...
* gnu/packages/web.scm (netsurf-buildsystem): Update to 1.6.
2017-11-05 07:46:00 -06:00
511d8a02e8
gnu: emacs-evil: Update to 1.2.13.
...
* gnu/packages/emacs.scm (emacs-evil): Update to 1.2.13.
(source): Adjust URL to new upstream location on github.
(home-page): likewise.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:47 +01:00
db574f7183
gnu: emacs-slime: Use correct Texinfo commands in the description.
...
Previously the description had "@{something}" in it which is never
valid Texinfo. This commit changes it to use "@command{something}"
to render the full description.
* gnu/packages/emacs.scm (emacs-slime)[description]: Correct Texinfo usage.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:33 +01:00
77a7891b87
gnu: emacs-undo-tree: Update to 0.6.6.
...
* gnu/packages/emacs (emacs-undo-tree): Update to 0.6.6.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:20 +01:00
5fa1b4174a
gnu: emacs-which-key: Update to 3.0.2.
...
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.0.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:31 +01:00
9505877205
gnu: emacs-neotree: Update to 0.5.2.
...
* gnu/packages/emacs.scm (emacs-neotree): Update to 0.5.2.
[source](uri): Adjust URL to tag change.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:14 +01:00
aa70cf8c36
gnu: redis: Update to 4.0.2.
...
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-11-05 19:03:32 +01:00
39f2433c39
gnu: sdl2: Update to 2.0.7 and enable Wayland backend.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.7.
[inputs]: Add wayland, wayland-protocols, libxkbcommon.
[arguments]: Add '--disable-wayland-shared' to #:configure-flags.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 18:14:19 +01:00
7c5cc40097
gnu: add disorderfs.
...
* gnu/packages/file-systems.scm (disorderfs): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:50:48 +01:00
e55c46b850
gnu: python-decorator: Update to 4.1.2.
...
* gnu/packages/python.scm (python-decorator): Update to 4.1.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:27:42 +01:00
743d3f6502
gnu: calibre: Install mimetypes.
...
* gnu/packages/ebook.scm (calibre)[arguments]: Install mimetypes xml file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
9132212fb8
gnu: calibre: Add optipng as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add optipng.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
bf4a40db3c
gnu: calibre: Add python2-dukpy as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-dukpy. dukpy was
unbundled from Calibre, so we need to to use the Guix version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
2e15906c1c
gnu: Add python-dukpy, python2-dukpy.
...
gnu/packages/python.scm (python-dukpy, python2-dukpy): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
7ed93a6c9e
gnu: calibre: Update to 3.11.1.
...
* gnu/packages/ebook.scm (calibre): Update to 3.11.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
540dd1c8cc
gnu: retroarch: Enable Wayland support.
...
* gnu/packages/games.scm (retroarch)[inputs]: Add wayland.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
ca1ddce8a3
gnu: weston: Update to 3.0.0.
...
* gnu/packages/freedesktop.scm (weston): Update to 3.0.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
8d2bde86ec
gnu: lollypop: Update to 0.9.304.
...
* gnu/packages/gnome.scm (lollypop): Update to 0.9.304.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
08d61397cd
gnu: gnome-terminal: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.26.2.
2017-11-05 16:44:51 +01:00
68488f275d
gnu: vte: Update to 0.50.2.
...
* gnu/packages/gnome.scm (vte): Update to 0.50.2.
2017-11-05 16:44:50 +01:00
7561be8699
gnu: fio: Update to 3.2.
...
* gnu/packages/benchmark.scm (fio): Update to 3.2.
2017-11-05 16:16:51 +01:00
3c41b9929b
gnu: feh: Update to 2.22.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.
[native-search-paths]: New field.
2017-11-05 16:08:02 +01:00
21b71b01e9
services: Add 'description' fields.
...
* gnu/services/admin.scm (rottlog-service-type)
(tailon-service-type): Add 'description' field.
* gnu/services/audio.scm (mpd-service-type): Likewise.
* gnu/services/avahi.scm (avahi-service-type): Likewise.
* gnu/services/ssh.scm (lsh-service-type)
(openssh-service-type, dropbear-service-type): Likewise.
2017-11-05 15:29:52 +01:00
b6d2930d1f
services: Add murmur.
...
* gnu/services/telephony.scm: New file.
* gnu/local.mk: Add it.
* doc/guix.texi (Telephony Services): New node.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-05 15:21:53 +01:00
50c229caf9
gnu: fio: Update to 3.1.
...
* gnu/packages/benchmark.scm (fio): Update to 3.1.
2017-11-05 12:29:46 +02:00
1289001a5d
gnu: prison: Move to be in alphabetical order.
...
I was trapped be the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (prison): Move in front of
solid.
2017-11-05 10:56:40 +01:00
a7dc855725
gnu: kdewebkit: Move to be in alphabetical order.
...
I was trapped by the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (kdewebkit): Move in front of
kemoticons.
2017-11-05 10:56:40 +01:00
39d1a429fe
gnu: kactivities: Move to tier 2.
...
KDE now lists this package as tier 2, I was trapped by the
definitions being at the wrong place.
* gnu/packages/kde-frameworks.scm (kactivities): Move into the
"section" of tier 2 packages. (kactivities-stats) Remove now
obsolete comment.
2017-11-05 10:56:39 +01:00
571f1fa3b2
gnu: libksysguard: Update to 5.11.2.
...
* gnu/packages/kde.scm (libksysguard): Update to 5.11.2.
2017-11-05 10:56:39 +01:00
e8737735a2
gnu: solid: Enable building interface for qml.
...
* gnu/package/kde-frameworks.scm(solid)[inputs]: Add qtdeclarative.
2017-11-05 10:56:38 +01:00
b1beb1670b
gnu: krunner: Make some tests pass.
...
* gnu/packages/kde-frameworks.scm[arguments]
<#:tests?>: Remove.
<#:phases>[fix-paths-for-test'] New phase.
<#:phases>[check-setup]: Set $HOME. Blacklist a failing new-in-5.39.0 test.
2017-11-05 10:56:37 +01:00
5bc1efd77d
gnu: kdelibs4support: Make test kstandarddirstest pass.
...
* gnu/package/kde-frameworks.scm(kdelibs4support)[#:phases]
<check-post-install>: Add workaround for bug in test-case.
Update comment.
2017-11-05 10:56:36 +01:00
fa274ab2c0
gnu: kimageformats: Update comment.
...
* gnu/packages/kde-frameworks.scm(kimageformats): Update comment.
2017-11-05 10:56:36 +01:00
6211aadf4b
gnu: kde-frameworks: Update to 5.39.0.
...
Beside simple updating:
- ktexteditor: Add input.
- kdelibs4support: Enable test kmimetypetest, disable test kuniqueapptest.
- kimageformats: Make the plugins available for tests.
- krunner: Make old tests pass again. Blacklist a failing new test.
* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, breeze-icons,
extra-cmake-modules, kactivities, kactivities-stats, kapidox, karchive,
kauth, kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets,
kcoreaddons, kcrash, kdbusaddons, kdeclarative, kded,
kde-frameworkintegration, kdelibs4support, kdesignerplugin, kdesu,
kdewebkit, kdnssd, kdoctools, kemoticons, kfilemetadata, kglobalaccel,
kguiaddons, khtml, ki18n, kiconthemes, kidletime, kimageformats, kinit, kio,
kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer,
knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople,
kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting,
ktextwidgets, kunitconversion, kwallet, kwayland, kwidgetsaddons,
kwindowsystem, kxmlgui, kxmlrpcclient, modemmanager-qt, networkmanager-qt,
oxygen-icons, plasma-framework, prison, solid, sonnet, threadweaver): Update
to 5.39.0
(ktexteditor) Update to 5.39.0. [source]: Add patch. [inputs]: Add
qtdeclarative.
(kdelibs4support): Update to 5.39.0. [#:phase check-post-install]: Remove
kmimetypetest from and add kuniqueapptest to list of test to be excluded
when running ctest.
(kimageformats): Update to 5.39.0. [#:phase check-setup] Make the plugins
available for tests.
* gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-05 10:56:35 +01:00
9f5bd38f94
gnu: extra-cmake-modules: Install pri-files into lib/qt5/.
...
This in accordance with the documentation in
ECMGeneratePriFile.cmake: "Packagers … want to set
`ECM_MKSPECS_INSTALL_DIR` to something like
`share/qt5/mkspecs/modules`." Our Qt5 is putting pri-files into
`lib/qt5/mkspecs/modules`.
* gnu/packages/kde-frameworks.scm(extra-cmake-modules)[#:phase fix-lib-path]:
New substitute for file 'modules/ECMGeneratePriFile.cmake'.
2017-11-05 10:56:34 +01:00
46dea1241c
gnu: icedtea: Update to 3.6.0 [security fixes].
...
Fixes CVE-2017-{10274,10821,10825,10295,10388,10346,10350,10347,10349,10345,
10348,10357,10355,10356,10165} and CVE-2016-{10165,9840,9841,9842,9843}.
* gnu/packages/java.scm (icedtea-8): Update to 3.6.0.
[native-inputs]: Update dependency hashes.
2017-11-04 15:33:59 +01:00
171ba2480f
gnu: diamond: Update to 0.9.12.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.12.
2017-11-04 10:51:44 +10:00
d3f140218b
gnu: sssd: Disable failing test.
...
* gnu/packages/sssd.scm (sssd)[arguments]<#:phases>: Add substitution to
'disable-failing-test' phase.
2017-11-04 00:07:40 +01:00
f1ae27b608
gnu: samba: Update to 4.7.1.
...
* gnu/packages/samba.scm (samba): Update to 4.7.1.
2017-11-04 00:07:40 +01:00
ad25310dd5
gnu: ldb: Update to 1.3.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.3.0.
2017-11-04 00:07:40 +01:00
d94c679254
gnu: re2: Update to 2017-11-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-11-01.
2017-11-04 00:07:39 +01:00
1695bd788d
gnu: libxfont@1: Update to 1.5.3.
...
* gnu/packages/xorg.scm (libxfont): Update to 1.5.3.
[source](patches): Remove.
2017-11-04 00:07:39 +01:00
66865ab8ac
gnu: multiqc: Update to 1.3.
...
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.3.
[propagated-inputs]: Add python-enum34.
[license]: The license was changed to "GPLv3 or later" with this release.
2017-11-03 17:18:52 +01:00
416ad6feaa
gnu: iso-codes: Update to 3.76.
...
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.76.
2017-11-03 09:34:13 -04:00
b12c6a664d
gnu: r-ape: Update to 5.0.
...
* gnu/packages/bioinformatics.scm (r-ape): Update to 5.0.
[propagated-inputs]: Add r-rcpp.
2017-11-03 14:14:38 +01:00
840782204f
gnu: r-bbmle: Update to 1.0.20.
...
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.20.
2017-11-03 14:14:38 +01:00
1a1b4f0571
gnu: r-proxy: Update to 0.4-19.
...
* gnu/packages/cran.scm (r-proxy): Update to 0.4-19.
2017-11-03 14:14:38 +01:00
a8a2871f71
gnu: r-glue: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.2.0.
2017-11-03 14:14:38 +01:00
a6ec5b7043
gnu: r-withr: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
1fb415cb50
gnu: r-purrr: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
c8818f5577
gnu: r-irlba: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
116e9837b5
gnu: r-checkmate: Update to 1.8.5.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
fde66e3018
gnu: r-multitaper: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
b5a2f37157
gnu: r-pryr: Update to 0.1.3
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
6b968c4cd3
gnu: Add r-corrplot.
...
* gnu/packages/cran.scm (r-corrplot): New variable.
2017-11-03 10:34:24 +01:00
81e0b62502
gnu: Add r-ggrepel.
...
* gnu/packages/cran.scm (r-ggrepel): New variable.
2017-11-03 10:34:23 +01:00
0f3142e7c3
gnu: linux-libre: Update to 4.13.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.11.
(%linux-libre-hash): Update hash.
2017-11-03 01:31:06 -04:00
336b8d422d
gnu: linux-libre@4.9: Update to 4.9.60.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.60.
2017-11-03 01:30:25 -04:00
15d44dfe22
gnu: linux-libre@4.4: Update to 4.4.96.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.96.
2017-11-03 01:29:33 -04:00
72df48dbad
gnu: Add kodi-cli.
...
* gnu/packages/kodi.scm (kodi-cli): New variable.
2017-11-03 06:46:03 +03:00
1d84500a72
gnu: conda: Fix environment scripts.
...
* gnu/packages/package-management.scm (conda)[arguments]: Add phase
"undo-wrap".
2017-11-03 00:12:46 +01:00
ada53b1d50
Revert "gnu: itstool: Update to 2.0.4."
...
This reverts commit 13fbd174b5
2017-11-02 23:00:23 +01:00
77576be41f
gnu: openssl@1.1: Update to 1.1.0g [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0g.
[source]: Add HTTPS mirror.
2017-11-02 22:21:59 +01:00
1df4f5c919
gnu: openssl@1.0: Replace with 1.0.2m [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2m): New public variable.
2017-11-02 22:21:59 +01:00
22bf67d1f4
gnu: enlightenment: Update to 0.22.0.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.0.
2017-11-02 23:05:11 +02:00
41b5408235
gnu: efl: Update to 1.20.5.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.5.
2017-11-02 23:05:09 +02:00
bc183968f5
gnu: vte-ng: Update to 0.50.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.2.a.
2017-11-02 21:17:41 +01:00
52995941bc
gnu: gnome-todo: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-todo): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
92c9392767
gnu: dconf-editor: Update to 3.26.2.
...
* gnu/packages/gnome.scm (dconf-editor): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
b39e612115
gnu: gnome-clocks: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.26.1.
2017-11-02 21:10:20 +01:00
1b59d45ee4
gnu: file-roller: Update to 3.26.2.
...
gnu/packages/gnome.scm (file-roller): Update to 3.26.2.
2017-11-02 21:10:20 +01:00
46994d0d4c
gnu: aisleriot: Update to 3.22.4.
...
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.4.
2017-11-02 21:10:19 +01:00
03e775d4e8
gnu: knot: Update to 2.6.1.
...
* gnu/packages/dns.scm (knot): Update to 2.6.1.
2017-11-02 21:10:18 +01:00
73b80ff924
gnu: miniupnpc: Update to 2.0.20171102.
...
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171102.
2017-11-02 21:10:18 +01:00
3440f12a7e
gnu: mpv: enable Wayland support.
...
* gnu/packages/video.scm (mpv)[inputs]: Add wayland and libxkbcommon.
2017-11-02 16:03:25 -04:00
13fbd174b5
gnu: itstool: Update to 2.0.4.
...
* gnu/packages/glib.scm (itstool): Update to 2.0.4.
[inputs]: Replace python and python-libxml2 with python-2 and python2-libxml2.
2017-11-02 15:37:22 -04:00
67bd376b1a
gnu: gnome-maps: Update to 3.26.2.
...
* gnu/packages/geo.scm (gnome-maps): Update to 3.26.2.
[arguments]: In 'install' phase, add webkitgtk to LD_LIBRARY_PATH.
2017-11-02 14:42:58 -04:00
4dd137d508
gnu: libgweather: Update to 3.26.0.
...
* gnu/packages/gnome.scm (libgweather): Update to 3.26.0.
2017-11-02 12:05:03 -04:00
bb27eb0dbf
gnu: Add java-plexus-classworlds.
...
* gnu/packages/java.scm (java-plexus-classworlds): New variable.
2017-11-02 13:07:38 +01:00
4d50897515
gnu: Add java-powermock-api-easymock.
...
* gnu/packages/java.scm (java-powermock-api-easymock): New variable.
2017-11-02 13:07:30 +01:00
33db168181
gnu: Add java-powermock-modules-junit4.
...
* gnu/packages/java.scm (java-powermock-modules-junit4): New variable.
2017-11-02 13:07:27 +01:00
6c21d46c70
gnu: Add java-powermock-modules-junit4-common.
...
* gnu/packages/java.scm (java-powermock-modules-junit4-common): New
variable.
2017-11-02 13:07:24 +01:00
2d5d65d7dd
gnu: Add java-powermock-api-support.
...
* gnu/packages/java.scm (java-powermock-api-support): New variable.
2017-11-02 13:07:22 +01:00
d4a4d5da60
gnu: Add java-powermock-core.
...
* gnu/packages/java.scm (java-powermock-core): New variable.
2017-11-02 13:07:19 +01:00
8d6a48150a
gnu: Add java-powermock-reflect.
...
* gnu/packages/java.scm (java-powermock-reflect): New variable.
* gnu/packages/patches/java-powermock-fix-java-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-11-02 13:07:17 +01:00
5619556b24
gnu: Add java-xerial-core.
...
* gnu/packages/java.scm (java-xerial-core): New variable.
2017-11-02 13:07:15 +01:00
a53d9ac0f2
gnu: Add java-lmax-disruptor.
...
* gnu/packages/java.scm (java-lmax-disruptor): New variable.
2017-11-02 13:07:12 +01:00
3120836732
gnu: Add java-bouncycastle-bcpkix.
...
* gnu/packages/java.scm (java-bouncycastle-bcpkix): New variable.
2017-11-02 13:07:09 +01:00
62315865df
gnu: Add java-bouncycastle-bcprov.
...
* gnu/packages/java.scm (java-bouncycastle-bcprov): New variable.
2017-11-02 13:07:07 +01:00
d54d7d31ac
gnu: Add java-lz4.
...
* gnu/packages/java.scm (java-lz4): New variable.
2017-11-02 13:07:04 +01:00
eaf3cb7a41
gnu: Add java-mvel2.
...
* gnu/packages/java.scm (java-mvel2): New variable.
2017-11-02 13:07:01 +01:00
1717a7de7b
gnu: Add java-jnacl.
...
* gnu/packages/java.scm (java-jnacl): New variable.
2017-11-02 13:06:59 +01:00
0442d897e9
gnu: Add java-testng.
...
* gnu/packages/java.scm (java-testng): New variable.
2017-11-02 13:06:56 +01:00
ca98e4481f
gnu: Add java-fest-assert.
...
* gnu/packages/java.scm (java-fest-assert): New variable.
2017-11-02 13:06:54 +01:00
3c6c835806
gnu: Add java-fest-test.
...
* gnu/packages/java.scm (java-fest-test): New variable.
2017-11-02 13:06:51 +01:00
7a343e971a
gnu: Add java-fest-util.
...
* gnu/packages/java.scm (java-fest-util): New variable.
2017-11-02 13:06:48 +01:00
e84b899d50
gnu: Add java-jmock-legacy.
...
* gnu/packages/java.scm (java-jmock-legacy): New variable.
2017-11-02 13:06:46 +01:00
25436c6d03
gnu: Add java-jmock-junit4.
...
* gnu/packages/java.scm (java-jmock-junit4): New variable.
2017-11-02 13:06:43 +01:00
045124ae2f
gnu: Add java-jmock.
...
* gnu/packages/java.scm (java-jmock): New variable.
2017-11-02 13:06:41 +01:00
11bc385b7b
gnu: Add java-bsh.
...
* gnu/packages/java.scm (java-bsh): New variable.
2017-11-02 13:06:38 +01:00
a6dd06d0e2
gnu: Add java-jcommander.
...
* gnu/packages/java.scm (java-jcommander): New variable.
2017-11-02 13:06:19 +01:00
2524a2a17a
gnu: five-or-more: Update to 3.26.0.
...
* gnu/packages/gnome.scm (five-or-more): Update to 3.26.0.
2017-11-02 07:36:58 -04:00
30ee6bf5d2
gnu: dejagnu: Update to 1.6.1.
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* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.1.
2017-11-02 13:12:15 +02:00
50e3f2a5a4
gnu: emacs-helm-make: Update to 0.1.0-1.21c1bfa.
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* gnu/packages/emacs.scm (emacs-helm-make): Update to 0.1.0-1.21c1bfa.
2017-11-02 11:05:46 +03:00
a254971350
gnu: units: Add readline input.
...
* gnu/packages/maths.scm (units)[inputs]: Add readline.
2017-11-01 17:17:01 -05:00
0498d24866
gnu: units: Add python input.
...
* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field. Add 'wrap-units_cur phase.
2017-11-01 17:15:10 -05:00
f11d2849a1
gnu: units: Update to 2.16.
...
* gnu/packages/maths.scm (units): Update to 2.16.
2017-11-01 17:11:15 -05:00
55ed15baba
gnu: gnome-mines: Update to 3.26.0.
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* gnu/packages/gnome.scm (gnome-mines): Update to 3.26.0.
2017-11-01 19:49:46 -04:00
88b35013b7
gnu: git: Update to 2.15.0.
...
* gnu/packages/version-control.scm (git): Update to 2.15.0.
2017-11-01 21:26:58 +01:00
61e1d6a791
gnu: imagemagick: Update to 6.9.9-21.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-21.
[home-page]: Use HTTPS.
2017-11-01 21:26:50 +01:00
449ad88bb5
gnu: libass: Update to 0.14.0.
...
* gnu/packages/video.scm (libass): Update to 0.14.0.
[native-inputs]: Change from YASM to NASM.
2017-11-01 20:29:32 +01:00
5d7141cd28
tests: ssh: Make sure we can run executables from PATH.
...
* gnu/tests/ssh.scm (run-ssh-test): Add tests for running commands in system
and user profile.
2017-11-01 20:29:32 +01:00
2c16be569c
system: Return early in skeleton '.bashrc' when the shell is non-interactive.
...
* gnu/system/shadow.scm (default-skeletons)[bashrc]: Add return statement.
2017-11-01 20:29:32 +01:00
0ab59dd8b8
system: Test for interactive shell instead of `cat` in skeleton '.bashrc'.
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* gnu/system/shadow.scm (default-skeletons)[bashrc]: Wrap $SSH_CLIENT test in
a conditional testing for interactive shell.
2017-11-01 20:29:32 +01:00
83a7a88f93
gnu: feh: Enable tests.
...
* gnu/packages/image-viewers.scm (feh)[arguments]: Remove #:tests?. Add
#:test-target.
[native-inputs]: Add PERL and PERL-TEST-COMMAND. New field.
2017-11-01 20:29:32 +01:00
6b520156c2
gnu: Add perl-test-command.
...
* gnu/packages/perl.scm (perl-test-command): New public variable.
2017-11-01 20:29:32 +01:00
5010d0e364
gnu: wine64: Add aarch64-linux to supported-systems.
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* gnu/packages/wine.scm (wine64)[supported-systems]: Add aarch64-linux.
2017-11-01 10:17:18 +02:00
03d6e9dd08
gnu: vsearch: Update to 2.5.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.2.
2017-11-01 10:57:05 +10:00
e126b79736
gnu: diamond: Update to 0.9.11.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.11.
2017-11-01 10:57:03 +10:00
e6ee13599d
gnu: libfilezilla: Update to 0.11.1.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.11.1.
2017-11-01 01:02:04 +01:00
9b5db24e7a
gnu: gnome-mpv: Update to 0.13.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.13.
2017-11-01 01:02:04 +01:00
78ab71ce1d
gnu: you-get: Update to 0.4.939.
...
* gnu/packages/video.scm (you-get): Update to 0.4.939.
2017-11-01 01:02:03 +01:00
bc8bd40e6a
gnu: ncmpcpp: Update to 0.8.1.
...
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.8.1.
2017-10-31 18:13:53 -04:00
cd5c3979d1
gnu: Add emacs-ggtags.
...
* gnu/packages/emacs.scm (emacs-ggtags): New variable.
2017-10-31 20:08:00 +03:00
90bf26088e
gnu: Add sakura.
...
* gnu/packages/terminals.scm (sakura): New variable.
2017-10-31 09:41:52 -04:00
016590a951
gnu: Add emacs-company-quickhelp.
...
* gnu/packages/emacs.scm (emacs-company-quickhelp): New variable.
2017-10-31 14:55:18 +03:00
56295c5160
gnu: lxc: Update to 2.1.1.
...
* gnu/packages/virtualization.scm (lxc): Update to 2.1.1.
2017-10-31 19:28:09 +08:00
2e4bb8c817
gnu: Add emacs-helm-make.
...
* gnu/packages/emacs.scm (emacs-helm-make): New variable.
2017-10-31 14:10:37 +03:00
7bf59f7021
gnu: Remove cufflinks.
...
Cufflinks includes essential non-free code.
Fixes <https://bugs.gnu.org/28946 >.
* gnu/packages/bioinformatics.scm (cufflinks): Remove variable.
2017-10-31 08:17:06 +01:00
b275cd22d4
gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618].
...
* gnu/packages/apr.scm (apr): Update to 1.6.1.
2017-10-30 21:46:18 -04:00
b614c48017
gnu: apr: Update to 1.6.3 [fixes CVE-2017-12613].
...
* gnu/packages/apr.scm (apr): Update to 1.6.3.
2017-10-30 21:46:18 -04:00
3022680aba
gnu: mpd: Update to 0.20.11.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.11.
2017-10-30 21:46:14 -04:00
44b8823fc7
gnu: quagga: Update to 1.2.2 [fix CVE-2017-16227].
...
* gnu/packages/networking.scm (quagga): Update to 1.2.2.
2017-10-30 20:42:13 -04:00
8b17ee4846
gnu: webkitgtk: Update to 2.18.2.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.2.
2017-10-30 20:07:00 -04:00
c2eb8cd98c
gnu: xorg-server: Build reproducibly.
...
Fixes <https://bugs.gnu.org/24112 >.
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass "--with-os-name"
and "--with-os-vendor" as #:configure-flags.
Augment 'pre-configure' phase to set 'BUILD_DATE' and 'BUILD_TIME' in
'configure'.
2017-10-31 00:51:37 +01:00
8ff5b8aaa3
gnu: perl-http-cookies: Fix source uri.
...
This is a follow-up to d284f01826
2017-10-30 19:49:37 +02:00
484a1c05d0
gnu: ola: Update to 0.10.5.
...
* gnu/packages/lighting.scm (ola): Update to 0.10.5.
2017-10-30 17:20:43 +01:00
59261ebeea
gnu: ethtool: Update to 4.13.
...
* gnu/packages/networking.scm (ethtool): Update to 4.13.
2017-10-30 17:20:42 +01:00
2fb83ca6c5
gnu: perl-class-tiny: Update to 1.006.
...
* gnu/packages/perl.scm (perl-class-tiny): Update to 1.006.
2017-10-30 17:20:42 +01:00
7e5132a297
gnu: perl-extutils-pkgconfig: Update to 1.16.
...
* gnu/packages/perl.scm (perl-extutils-pkgconfig): Update to 1.16.
2017-10-30 17:20:41 +01:00
72ef03b92b
gnu: perl-json-any: Update to 1.39.
...
* gnu/packages/perl.scm (perl-json-any): Update to 1.39.
2017-10-30 17:20:41 +01:00
caa7adacce
gnu: perl-sub-exporter-progressive: Update to 0.001013.
...
* gnu/packages/perl.scm (perl-sub-exporter-progressive): Update to 0.001013.
2017-10-30 17:20:41 +01:00
922814ae65
gnu: perl-html-lint: Update to 2.26.
...
* gnu/packages/perl.scm (perl-html-lint): Update to 2.26.
2017-10-30 17:20:40 +01:00
d284f01826
gnu: perl-http-cookies: Update to 6.04.
...
* gnu/packages/perl.scm (perl-http-cookies): Update to 6.04.
2017-10-30 17:20:40 +01:00
58ade30228
gnu: perl-xml-libxml: Update to 2.0132.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0132.
2017-10-30 17:20:07 +01:00
faffd821f3
gnu: wine: Update to 2.0.3.
...
* gnu/packages/wine.scm (wine): Update to 2.0.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-30 10:42:20 -04:00
8fd4320033
gnu: ffmpeg: Configure with frei0r.
...
* gnu/packages/video.scm (ffmepg)[inputs]: Add 'frei0r-plugins'.
(arguments)[configure-flags]: Add '--enable-frei0r' and remove
'TODO' comment about frei0r.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
49e1d76dd9
gnu: Add frei0r-plugins.
...
* gnu/packages/video.scm (frei0r-plugins): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
1f6f4c40c1
gnu: Add r-tgconfig.
...
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
7941d1ed5d
gnu: Add r-tgstat.
...
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
491dc2fb16
gnu: java: Fix libjvm.so linkage problem in icedtea-7.
...
* gnu/packages/java.scm (icedtea-7): Add phase to create a symbolic link to
libjvm.so.
2017-10-30 11:19:51 +01:00
91496dfc9a
tests: install: Estimate the installation system disk size.
...
1500 MiB are too small for a current system, thus let
system-disk-image estimate the required size.
* gnu/tests/install.scm: (run-install): Pass "#:disk-image-size
'guess" to system-disk-image.
2017-10-30 09:12:56 +01:00
73f71bc9b7
gnu: tig: Update to 2.3.0.
...
* gnu/packages/version-control.scm (tig): Update to 2.3.0.
[source]: Download from Github.
[home-page]: Update to new home-page.
2017-10-29 22:35:56 +02:00
0c6f4bec2e
gnu: Add newsboat.
...
* gnu/packages/syndication.scm (newsboat): New variable.
2017-10-29 22:02:44 +02:00
f7ddf99696
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2017-10-29 15:29:18 -04:00
c9dc457711
gnu: mu: Add build phase to fix library reference.
...
* gnu/packages/mail.scm (mu)[arguments]: Add build phase "fix-ffi" to fix
reference to libguile-mu library.
2017-10-29 18:30:58 +01:00
d59ec12975
gnu: mu: Use Guile 2.2.
...
* gnu/packages/mail.scm (mu)[inputs]: Replace guile-2.0 with guile-2.2.
[arguments]: Replace references to version 2.0.
2017-10-29 18:30:58 +01:00
8de54944f7
gnu: offlineimap: Update to 7.1.4.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.1.4.
2017-10-29 17:32:39 +01:00
8281f8263d
gnu: youtube-dl: Update to 2017.10.29.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.29.
2017-10-29 17:32:39 +01:00
be03120d78
gnu: perl-test-www-mechanize-psgi: Update to 0.37.
...
gnu/packages/web.scm (perl-test-www-mechanize-psgi): Update to 0.37.
2017-10-29 17:32:38 +01:00
303c68588a
gnu: perl-test-www-mechanize: Update to 1.48.
...
gnu/packages/web.scm (perl-test-www-mechanize): Update to 1.48.
2017-10-29 17:32:38 +01:00
c2d1b935e0
gnu: perl-uri-find: Update to 20160806.
...
* gnu/packages/web.scm (perl-uri-find): Update to 20160806.
2017-10-29 17:32:38 +01:00
4f50fd752b
gnu: perl-email-mime: Update to 1.946.
...
* gnu/packages/mail.scm (perl-email-mime): Update to 1.946.
[propagated-inputs]: Add perl-module-runtime.
2017-10-29 17:32:37 +01:00
9b5fc20c4e
gnu: perl-email-mime-contenttype: Update to 1.022.
...
* gnu/packages/mail.scm (perl-email-mime-contenttype): Update to 1.022.
2017-10-29 17:32:37 +01:00
25adc0066a
gnu: perl-email-simple: Update to 2.214.
...
* gnu/packages/mail.scm (perl-email-simple): Update to 2.214.
2017-10-29 17:32:36 +01:00
801eb74620
gnu: perl-email-sender: Update to 1.300031.
...
* gnu/packages/mail.scm (perl-email-sender): Update to 1.300031.
2017-10-29 17:32:36 +01:00
adce670797
gnu: perl-tie-cycle: Update to 1.225.
...
* gnu/packages/perl.scm (perl-tie-cycle): Update to 1.225.
2017-10-29 15:22:24 +01:00
ec4e2b24a7
gnu: perl-text-table: Update to 1.133.
...
* gnu/packages/perl.scm (perl-text-table): Update to 1.133.
2017-10-29 15:22:23 +01:00
c97dadcc97
gnu: perl-safe-isa: Update to 1.000008.
...
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000008.
2017-10-29 15:22:21 +01:00
384dec0889
gnu: perl-log-log4perl: Update to 1.49.
...
* gnu/packages/perl.scm (perl-log-log4perl): Update to 1.49.
2017-10-29 15:22:20 +01:00
dbbc8f5a86
gnu: perl-file-sharedir-dist: Update to 0.05.
...
* gnu/packages/perl.scm (perl-file-sharedir-dist): Update to 0.05.
2017-10-29 15:22:19 +01:00
37fcabf0ef
gnu: perl-business-ismn: Update to 1.131.
...
* gnu/packages/perl.scm (perl-business-ismn): Update to 1.131.
2017-10-29 15:22:17 +01:00
6a2c510dc5
gnu: perl-net-dns: Update to 1.13.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.13.
2017-10-29 15:22:16 +01:00
11e5e932ad
gnu: conkeror: Update to 1.1.0.
...
* gnu/packages/conkeror.scm (conkeror): Update to 1.1.0.
2017-10-29 11:21:12 +01:00
53a3f5d792
gnu: giac-xcas: Update to 1.4.9-17.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.4.9-17. Remove
unnecessary workaround about failing test.
2017-10-29 10:06:44 +01:00
4a8bd5500d
gnu: scribus: Update to 1.5.3. Add inputs.
...
* gnu/packages/scribus.scm (scribus): Update to 1.5.3.
[input]: Add fontconfig, harfbuzz, hunspell, icu4c, libcdr, libfreehand,
libmspub, librevenge, libvisio, openssl, podofo, poppler, and boost. Move
qttools to ...
[native-input]: ... here.
[home-page]: Fix URL.
Co-authored-by: Eric Bavier <bavier@member.fsf.org>
2017-10-29 09:09:56 +01:00
9de52b5643
gnu: perl-sys-cpu: Skip cpu_clock and cpu_type tests.
...
* gnu/packages/perl.scm (perl-sys-cpu)[source]: Replace test in snippet.
2017-10-28 18:20:58 -05:00
0f27666b91
gnu: linux-libre: Update to 4.13.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.10.
(%linux-libre-hash): Update hash.
2017-10-28 22:29:01 -04:00
88deca15b5
gnu: linux-libre@4.9: Update to 4.9.59.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.59.
2017-10-28 22:28:23 -04:00
813b4454a8
gnu: linux-libre@4.4: Update to 4.4.95.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.95.
2017-10-28 22:27:37 -04:00
c178aa344f
gnu: gavl: Fix building on armhf and aarch64.
...
* gnu/packages/video.scm (gavl)[arguments]: Add '-lm' to configure flags.
2017-10-28 23:11:12 +03:00
4b86f04a51
gnu: neomutt: Remove obsolete configure switches.
...
* gnu/packages/mail.scm (neomutt)[arguments]: Remove '--with-regex'
and '--with-external-dotlock' from configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:42 +02:00
32fc1ec3d5
gnu: neomutt: Do not inherit mutt.
...
* gnu/packages/mail.scm (neomutt): Remove (inherit mutt),
add 'build-system' and 'license'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:36 +02:00
7de23b02a1
gnu: neomutt: Update to 20171027.
...
* gnu/packages/mail.scm (neomutt): Update to 20171027.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:25 +02:00
bf1264ab70
gnu: emacs-yasnippet: Update to 0.12.2.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.12.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:31 +02:00
8a0d454eed
gnu: emacs-elfeed: Update to 2.2.0.
...
* gnu/packages/emacs.scm (emacs-elfeed): Update to 2.2.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:29 +02:00
9932dabfb6
gnu: emacs-hydra: Update to 0.14.0.
...
* gnu/packages/emacs.scm (emacs-hydra): Update to 0.14.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:25 +02:00
2b0ddaaac7
gnu: emacs-f: Update to 0.19.0.
...
* gnu/packages/emacs.scm (emacs-f): Update to 0.19.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:22 +02:00
4e4255849d
gnu: emacs-s: Update to 1.12.0.
...
* gnu/packages/emacs.scm (emacs-s): Update to 1.12.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:18 +02:00
c54a8fdf90
gnu: Update php to 7.1.11.
...
* gnu/packages/php.scm (php): Update to 7.1.11.
2017-10-28 14:19:15 +02:00
90ab26fa26
gnu: Add ocaml-utop.
...
* gnu/packages/ocaml.scm (ocaml-utop): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:33:59 +02:00
50856b7342
gnu: Add ocaml-findlib-1.7.3.
...
* gnu/packages/ocaml.scm (ocaml-findlib-1.7.3): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:33:46 +02:00
e88ff71c10
gnu: Add ocaml-lambda-term.
...
* gnu/packages/ocaml.scm (ocaml-zed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:12:20 +02:00
cd4abd293d
gnu: Add ocaml-zed.
...
* gnu/packages/ocaml.scm (ocaml-zed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:09:02 +02:00
c00233ac16
gnu: Add ocaml-jbuilder.
...
* gnu/packages/ocaml.scm (ocaml-jbuilder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:00:09 +02:00
ed1f071e98
gnu: perl-net-dns: Update to 1.13.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.13.
2017-10-28 01:55:26 +02:00
e13a63d933
gnu: perl-xml-libxml: Update to 2.0131.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0131.
2017-10-28 01:55:26 +02:00
50942a690e
gnu: kicad: Build with ngspice support.
...
* gnu/packages/engineering.scm (kicad):
[arguments] <configure-flags>: Add KICAD_SPICE flag.
[inputs]: Add libngspice.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:03:39 -07:00
c48799c0a5
gnu: kicad: Update to commit 5f4599f.
...
* gnu/packages/engineering.scm (kicad): Update to commit 5f4599f.
[arguments]: Add "install-lib-3d" phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:03:18 -07:00
c16fabfa9e
gnu: kicad-library: Update to 4.0.6.
...
* gnu/packages/engineering.scm (kicad-library): Update to 4.0.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:00:39 -07:00
c31b61ef53
gnu: Add qucs.
...
* gnu/packages/engineering.scm (qucs): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 12:42:49 -07:00
40a99ca014
gnu: freehdl: Depend on the current 'gcc-toolchain'.
...
* gnu/packages/engineering.scm (freehdl)[inputs]: Change
'gcc-toolchain-5' to 'gcc-toolchain'.
2017-10-27 12:37:38 -07:00
b887ede17d
gnu: gcc: Add unversioned 'gcc-toolchain' variable.
...
Reported by Theodoros Foradis <theodoros@foradis.org>.
* gnu/packages/commencement.scm (gcc-toolchain): Rename to...
(make-gcc-toolchain): ... this.
(gcc-toolchain): New variable.
(gcc-toolchain-5): Turn into an alias for 'gcc-toolchain'.
2017-10-27 12:35:49 -07:00
99b9857be7
gnu: Add Catalan dictionary for Aspell.
...
Hola!
* gnu/packages/aspell.scm (aspell-dict-ca): New variable.
2017-10-27 11:57:47 -07:00
085bcca313
gnu: Add hunspell-dict-en*.
...
* gnu/packages/aspell.scm (aspell-word-list): New procedure.
(define-word-list-dictionary): New macro.
(hunspell-dict-en, hunspell-dict-en-au, hunspell-dict-en-ca)
(hunspell-dict-en-gb, hunspell-dict-en-gb-ize, hunspell-dict-en-us): New
variables.
2017-10-27 09:33:15 -07:00
d3f9589842
gnu: freehdl: Fix gvhdl and freehdl-gennodes scripts.
...
* gnu/packages/engineering.scm (freehdl):
[arguments] <phases>: Add patch-gvhdl and patch-freehdl-gennodes phases.
Wrap-program "/bin/gvhdl" in make-wrapper phase.
[inputs]: Add guile-2.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 09:33:15 -07:00
e37bdc0f28
gnu: Add gavl.
...
* gnu/packages/video.scm (gavl): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:55 -04:00
c50fe6c291
gnu: Add python-pycanberra.
...
* gnu/packages/libcanberra.scm (python-pycanberra): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:55 -04:00
635f981b9a
gnu: Add gst-transcoder.
...
* gnu/packages/video.scm (gst-transcoder): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:54 -04:00
58a308e0b4
gnu: Add gwl.
...
* gnu/packages/package-management.scm (gwl): New variable.
2017-10-27 11:17:43 +02:00
4119376d66
gnu: exiv2: Add upstream security fixes.
...
Fixes CVE-2017-14859, CVE-2017-14860, CVE-2017-14862 and CVE-2017-14864.
* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch,
gnu/packages/patches/exiv2-CVE-2017-14860.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/image.scm (exiv2)[source]: Use them.
2017-10-27 00:50:09 +02:00
ba2cd6c2d8
gnu: synergy: Update repository URI and hash.
...
* gnu/packages/synergy.scm (synergy)[uri]: Replace synergy by synergy-core.
[sha256]: Update to reflect the name change of the archive root directory.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-26 15:45:14 -07:00
3414ce9876
gnu: snakemake: Update to 4.2.0.
...
* gnu/packages/python.scm (snakemake): Update to 4.2.0.
[propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml,
and python-ratelimiter, which are dependencies as of Snakemake 4.1.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
9d0866ce1b
gnu: Add python-ratelimiter.
...
* gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
Ricardo Wurmus
Efraim Flashner
Marius Bakke
Jan Nieuwenhuizen
Rutger Helling
Gábor Boskovits
Mathieu Othacehe
Dave Love
ng0
Timothy Sample
Timothy Sample
Oleg Pykhalov
Ludovic Courtès
Brendan Tildesley
Carlo Zancanaro
Tobias Geerinckx-Rice
Leo Famulari
Eric Bavier
rennes
nee
Manolis Ragkousis
Hartmut Goebel
Ben Woodcroft
Kei Kebreau
Mark H Weaver
Julien Lepiller
宋文武
Roel Janssen
Nicolas Goaziou
Kyle Meyer
Peter Kreye
Theodoros Foradis
Theodoros Foradis
Maxim Cournoyer