2a2bef35b8
gnu: linux-libre@4.19: Update to 4.19.109.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.109.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-12 20:51:25 -04:00
230a59d418
gnu: linux-libre@4.14: Update to 4.14.173.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.173.
(linux-libre-4.14-pristine-source): Update hash.
2020-03-12 20:50:52 -04:00
e0d5a43e51
gnu: linux-libre@4.9: Update to 4.9.216.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.216.
(linux-libre-4.9-pristine-source): Update hash.
2020-03-12 20:50:24 -04:00
dcd7a97b8c
gnu: linux-libre@4.4: Update to 4.4.216.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.216.
(linux-libre-4.4-pristine-source): Update hash.
2020-03-12 20:49:19 -04:00
0f864175dc
gnu: mingw-w64-*: Update to 7.0.0.
...
* gnu/packages/mingw.scm (make-mingw-w64): Update to 7.0.0.
2020-03-12 15:45:28 -04:00
b431f6c9cc
gnu: ghc-extra: Update to 1.7.1.
...
* gnu/packages/haskell-xyz.scm (ghc-extra): Update to 1.7.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-12 14:10:41 -04:00
e0dbed64c5
gnu: singularity: Do not use the "errors=remount-ro" squashfs option.
...
This mount option stopped being supported with Linux-libre 5.4.5:
http://ci.guix.gnu.org/build/2056359/details
* gnu/packages/linux.scm (singularity)[source]: Remove
"errors=remount-ro" mount option from source code.
2020-03-12 18:32:16 +01:00
22464cf32a
gnu: singularity: Wrap programs so they find Coreutils.
...
* gnu/packages/linux.scm (singularity)[arguments]: Add 'set-PATH' phase.
2020-03-12 18:32:16 +01:00
be78906592
gnu: Add guile-torrent.
...
* gnu/packages/guile-xyz.scm (guile-torrent): New variable.
Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-12 15:52:41 +01:00
0c08e4bfa1
gnu: edirect: Update to 13.3.20200128.
...
* gnu/packages/bioinformatics.scm (edirect): Update to 13.3.20200128.
[source]: Remove bundled certificate authority tarball.
2020-03-12 16:50:23 +02:00
72e76113f7
gnu: r-car: Update to 3.0-7.
...
* gnu/packages/statistics.scm (r-car): Update to 3.0-7.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:04 +01:00
92d6c94a16
gnu: r-nloptr: Update to 1.2.2.1.
...
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.1.
2020-03-12 15:15:04 +01:00
66f1fead63
gnu: r-roxygen2: Update to 7.1.0.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.0.
[native-inputs]: Move r-knitr from here...
[propagated-inputs]: ...to here.
2020-03-12 15:15:04 +01:00
09583a0f79
gnu: r-xml2: Update to 1.2.5.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.5.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:04 +01:00
defbaab3f8
gnu: r-tam: Update to 3.4-26.
...
* gnu/packages/cran.scm (r-tam): Update to 3.4-26.
2020-03-12 15:15:03 +01:00
4dab179de2
gnu: r-cdm: Update to 7.5-15.
...
* gnu/packages/cran.scm (r-cdm): Update to 7.5-15.
2020-03-12 15:15:03 +01:00
ca29e40dac
gnu: r-parameters: Update to 0.6.0.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.6.0.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
40ac3dc394
gnu: r-graphlayouts: Update to 0.6.0.
...
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.6.0.
2020-03-12 15:15:03 +01:00
9d3d3d1bd5
gnu: r-ggfortify: Update to 0.4.9.
...
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.9.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
0cc0e7e370
gnu: r-ggplotify: Update to 0.0.5.
...
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.5.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
f718c28cc6
gnu: r-pegas: Update to 0.13.
...
* gnu/packages/cran.scm (r-pegas): Update to 0.13.
2020-03-12 15:15:03 +01:00
a85aef2d75
gnu: r-spatialextremes: Update to 2.0-8.
...
* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-8.
2020-03-12 15:15:03 +01:00
dca5a8143f
gnu: r-tidytree: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.2.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
d520e4c942
gnu: r-rcppparallel: Update to 5.0.0.
...
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.0.
2020-03-12 15:15:03 +01:00
69a3c4ce51
gnu: r-sjplot: Update to 2.8.3.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.3.
[propagated-inputs]: Remove r-forcats.
[native-inputs]: Remove r-knitr.
2020-03-12 15:15:03 +01:00
cd26e5dee8
gnu: r-catdap: Update to 1.3.5.
...
* gnu/packages/cran.scm (r-catdap): Update to 1.3.5.
2020-03-12 15:15:03 +01:00
f7306e465e
gnu: r-vim: Update to 5.1.1.
...
* gnu/packages/cran.scm (r-vim): Update to 5.1.1.
2020-03-12 15:15:03 +01:00
117270fb51
gnu: r-vctrs: Update to 0.2.4.
...
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.4.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
6bd6097ed5
gnu: r-cicero: Update to 1.4.4.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:02 +01:00
0754fefb75
gnu: r-ggcyto: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:02 +01:00
e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
2020-03-12 15:15:02 +01:00
0b692ef2c6
gnu: r-qtl: Update to 1.46-2.
...
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.46-2.
2020-03-12 15:15:02 +01:00
04ff192ec4
gnu: Add hyperledger-iroha.
...
This package was co-authored with Efraim Flashner <efraim@flashner.co.il>
* gnu/packages/hyperledger.scm (hyperledger-iroha): New variable.
2020-03-12 15:34:28 +02:00
f204d155e3
gnu: Add boost-1.69.
...
* gnu/packages/boost.scm (boost-1.69): New hidden package.
2020-03-12 15:34:28 +02:00
37109658a5
gnu: Add hyperledger-iroha-ed25519.
...
* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519): New variable.
2020-03-12 15:34:28 +02:00
d56d3ae704
gnu: grpc: Build shared libraries.
...
* gnu/packages/machine-learning.scm (grpc)[outputs]: Add static.
[arguments]: Copy configure-flags from cmake-build-system. Add custom
phases 'configure-shared, 'install-shared-libraries and 'move-static-libs
to build shared libs and move static libs to their own output.
(tensorflow)[native-inputs]: Add grpc:static.
2020-03-12 15:34:28 +02:00
b0aa58d8f1
gnu: python2-jupyter-console: Build with python2.
...
* gnu/packages/python-xyz.scm (python2-jupyter-console)[arguments]: Add
python keyword, set to python-2.
2020-03-12 15:34:28 +02:00
e8588a7847
gnu: python-jupyter-console: Specify python2 variant.
...
* gnu/packages/python-xyz.scm (python-jupyter-console)[properties]: New
field. Specify python2-jupyter-console as python2 variant.
2020-03-12 15:34:27 +02:00
c107e50a0e
gnu: mumi: Update to 0.0.0-7.6653e2d.
...
* gnu/packages/mail.scm (mumi): Update to 0.0.0-7.6653e2d.
[inputs]: Add guile-sqlite3.
2020-03-12 12:47:45 +01:00
e4cdadc18d
gnu: r-cairo: Update to 1.5-11.
...
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-11.
2020-03-12 12:47:45 +01:00
0a703c0486
gnu: dune-istl: Build with suitesparse
...
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
f1f9466e33
gnu: Add dune-subgrid
...
* gnu/packages/maths.scm (dune-subgrid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
07ebb75d17
gnu: Add dune-uggrid.
...
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
a669f6e27b
gnu: dune-*: set up MPI for tests
...
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
a20cfe71e9
gnu: guile-next: Enable JIT on ARMv7.
...
JIT support on ARMv7 is fixed by "guile-3.0-crash.patch".
* gnu/packages/guile.scm (guile-3.0)[arguments]: Remove.
2020-03-12 11:52:21 +01:00
ec73c90ee3
gnu: Add virtualpg.
...
* gnu/packages/geo.scm (virtualpg): New variable.
2020-03-12 10:08:45 +01:00
69b03ecd95
gnu: jgmenu: Update to 4.1.0.
...
* gnu/packages/xdisorg.scm (jgmenu): Update to 4.1.0.
2020-03-12 10:08:45 +01:00
034d9544e2
gnu: udiskie: Update to 2.1.0.
...
* gnu/packages/freedesktop.scm (udiskie): Update to 2.1.0.
2020-03-12 10:08:45 +01:00
0aedcf4bc3
gnu: txr: Update to 233.
...
* gnu/packages/lisp.scm (txr): Update to 233.
2020-03-12 10:08:45 +01:00
d8ba1135eb
gnu: python2-ipython: Fix build.
...
* gnu/packages/python-xyz.scm (python2-ipython)[arguments]: Adjust
skipped tests.
2020-03-12 10:25:42 +02:00
bf8ee1c504
gnu: xlockmore: Update to 5.62.
...
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.62.
2020-03-12 05:10:21 +01:00
81166ee488
gnu: xlockmore: Use HTTPS home page.
...
* gnu/packages/xdisorg.scm (xlockmore)[home-page]: Use HTTPS.
2020-03-12 04:57:46 +01:00
cf580e5ebf
gnu: mame: Use HTTPS home page.
...
* gnu/packages/emulators.scm (mame)[home-page]: Use HTTPS.
2020-03-12 04:57:44 +01:00
a30f20d49c
gnu: dosbox: Use HTTPS home page.
...
* gnu/packages/emulators.scm (dosbox)[home-page]: Use HTTPS.
2020-03-12 04:57:43 +01:00
f930814afa
gnu: Add gitless.
...
* gnu/packages/version-control.scm (gitless): New public variable.
Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-03-12 04:57:42 +01:00
62f6f9d99f
gnu: faust: Use HTTPS home page.
...
* gnu/packages/audio.scm (faust)[home-page]: Use HTTPS.
2020-03-12 04:57:42 +01:00
286ab9d3f5
gnu: rsound: Use HTTPS home page.
...
* gnu/packages/audio.scm (rsound)[home-page]: Use HTTPS.
2020-03-12 04:57:42 +01:00
dd42a2f391
gnu: libgme: Update to 0.6.3.
...
* gnu/packages/music.scm (libgme): Update to 0.6.3.
2020-03-12 04:57:41 +01:00
b5d32fb9dd
gnu: xmobar: Update to 0.33.
...
* gnu/packages/wm.scm (xmobar): Update to 0.33.
2020-03-12 04:57:41 +01:00
094afc97c6
gnu: gptfdisk: Use HTTPS home page.
...
* gnu/packages/disk.scm (gptfdisk)[home-page]: Use HTTPS.
2020-03-12 04:57:41 +01:00
7247b84195
gnu: ephoto: Update source and home page URIs.
...
* gnu/packages/enlightenment.scm (ephoto)[source]: Remove dead URI.
[home-page]: Follow (HTTPS) redirection.
2020-03-12 04:57:41 +01:00
32df41beef
gnu: s6: Update to 2.9.1.0.
...
* gnu/packages/skarnet.scm (s6): Update to 2.9.1.0.
2020-03-12 04:57:41 +01:00
fe6cfa9943
gnu: simple-scan: Update to 3.36.0.
...
* gnu/packages/gnome.scm (simple-scan): Update to 3.36.0.
2020-03-12 04:57:40 +01:00
dd8cf0097e
gnu: picprog: Use HTTPS home page.
...
* gnu/packages/embedded.scm (picprog)[home-page]: Use HTTPS.
2020-03-12 04:57:40 +01:00
0308944ab0
gnu: java-snappy: Don't use unstable tarball.
...
* gnu/packages/java-compression.scm (java-snappy)[source]: Use GIT-FETCH
and GIT-FILE-NAME.
[arguments]: Add ‘make-git-checkout-writable’ phase.
2020-03-12 04:57:40 +01:00
ca0fe294d6
gnu: java-snappy: Update to 1.1.7.3.
...
* gnu/packages/java-compression.scm (java-snappy): Update to 1.1.7.3.
2020-03-12 04:57:39 +01:00
d7af0202a4
gnu: Borg: Update to 1.1.11.
...
* gnu/packages/backup.scm (borg): Update to 1.1.11.
2020-03-11 21:39:23 -04:00
4b5a0c0540
gnu: xxHash: Update to 0.7.3.
...
* gnu/packages/digest.scm (xxhash): Update to 0.7.3.
2020-03-11 21:39:16 -04:00
41c6e4f2b4
Merge branch 'master' into staging
2020-03-11 22:58:11 +01:00
58363ee500
gnu: Remove year range from copyright header.
...
* gnu/packages/python-xyz.scm: List years explicitly instead of range in
copyright line.
2020-03-11 22:56:51 +01:00
0a8655e6dc
gnu: Remove duplicate copyright line.
...
* gnu/packages/python-xyz.scm: Remove duplicate copyright.
2020-03-11 22:56:27 +01:00
cb18f2bf31
gnu: python-cookies: Use the correct version of pytest.
...
* gnu/packages/python-web.scm (python-cookies)[native-inputs]: Change
PYTHON2-PYTEST to PYTHON-PYTEST.
2020-03-11 22:43:45 +01:00
6bd7d4cb74
gnu: python2-radon: Fix build.
...
* gnu/packages/python-xyz.scm (python-radon)[properties]: New field.
* gnu/packages/python-xyz.scm (python2-radon)[propagated-inputs]: Add
PYTHON2-CONFIGPARSER and PYTHON2-FUTURE.
2020-03-11 22:43:45 +01:00
6006727974
gnu: python-virtualenv: Update to 20.0.10.
...
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.10.
2020-03-11 22:43:44 +01:00
7815afc958
gnu: python2-virtualenv: Fix build.
...
* gnu/packages/python-xyz.scm (python-virtualenv)[properties]: New field.
(python2-virtualenv)[propagated-inputs]: Add PYTHON2-CONTEXTLIB2.
[arguments]: New field.
2020-03-11 22:43:44 +01:00
ebd4c25178
gnu: python-contextlib2: Update to 0.6.0.post1.
...
* gnu/packages/python-xyz.scm (python-contextlib2): Update to 0.6.0.post1.
2020-03-11 22:43:44 +01:00
c03fc422b9
gnu: lpd8editor: Remove package.
...
This package has not built successfully in several months.
* gnu/packages/music.scm (lpd8editor): Remove variable.
2020-03-11 15:27:17 -04:00
dfe15d9919
gnu: Add xa.
...
* gnu/packages/assembly.scm (xa): New variable.
2020-03-11 15:13:30 -04:00
f7f67495ba
gnu: spatialite-gui: Fix GUI not showing up.
...
* gnu/packages/geo.scm (spatialite-gui)[arguments]: Add 'fix-gui' phase.
2020-03-11 19:33:25 +01:00
f8cbe98e65
gnu: isc-dhcp: Fix cross-compilation.
...
* gnu/packages/admin.scm (isc-dhcp)[arguments]: Set BUILD_CC in
'fix-bind-cross-compilation' phase. While at it, make the phase conditional
on %CURRENT-TARGET-SYSTEM.
2020-03-11 19:02:46 +01:00
805ac43c94
gnu: zile: Fix cross-compilation.
...
* gnu/packages/zile.scm (zile)[native-inputs]: Add THIS-PACKAGE when
cross-compiling.
[arguments]: Add phase when cross-compiling.
2020-03-11 18:58:48 +01:00
1ed3b845f7
gnu: python-multidict: Update to 4.7.5.
...
* gnu/packages/python-xyz.scm (python-multidict): Update to 4.7.5.
[arguments]: New field.
[native-inputs]: Remove PYTHON-PYTEST-RUNNER. Add PYTHON-PYTEST-COV.
2020-03-11 18:56:46 +01:00
ad2c0f5b09
gnu: Add clipmenu.
...
* gnu/packages/xdisorg.scm (clipmenu): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-11 18:42:09 +01:00
51f187bee5
gnu: Add clipnotify.
...
* gnu/packages/xdisorg.scm (clipnotify): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-11 18:42:09 +01:00
10c2ca9e4a
gnu: Add r-hrbrthemes.
...
* gnu/packages/cran.scm (r-hrbrthemes): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-03-11 18:00:36 +01:00
4510aeb91c
gnu: python2-sphinx: Build with python-docutils@0.14.
...
* gnu/packages/python-xyz.scm (python2-docutils-0.14): New public variable.
* gnu/packages/sphinx.scm (python2-sphinx)[propagated-inputs]: Change from
PYTHON2-DOCUTILS to PYTHON2-DOCUTILS-0.14.
2020-03-11 17:46:04 +01:00
e8df88003d
gnu: gnutls@3.6.10: Add dependency on datefudge and util-linux.
...
* gnu/packages/tls.scm (gnutls-3.6.10)[native-inputs]: New field.
2020-03-11 17:44:06 +01:00
cdf00cf75d
gnu: nsis: Update to 3.05.
...
* gnu/packages/installers.scm (nsis): Update to 3.05.
2020-03-11 11:42:22 -04:00
e05ce17dbc
gnu: Add phodav.
...
* gnu/packages/gnome.scm (phodav): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-11 16:12:45 +01:00
d9a2a255f9
gnu: python-pybedtools: Update to 0.8.1.
...
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.1.
[arguments]: Add another test to the 'disable-broken-tests phase.
(python2-pybedtools)[native-inputs]: Add python2-pathlib.
2020-03-11 16:31:33 +02:00
afb877847b
gnu: Add python2-pygraphviz.
...
* gnu/packages/graphviz.scm (python2-pygraphviz): New variable.
2020-03-11 16:23:52 +02:00
173053790c
gnu: python-pyfaidx: Update to 0.5.8.
...
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.8.
2020-03-11 15:45:33 +02:00
ea2822d7d6
gnu: Add python2-pyfaidx.
...
* gnu/packages/bioinformatics.scm (python2-pyfaidx): New variable.
2020-03-11 15:43:50 +02:00
578e4cf465
gnu: python2-ipykernel: Downgrade to 4.10.1.
...
This is the last version actually supported by ipykernel.
* gnu/packages/python-xyz.scm (python2-ipython): Downgrade to 4.10.1.
[arguments]: Remove custom 'check phase.
[propagated-inputs]: Add python2-tornado, python2-traitlets.
[native-inputs]: Add python2-mock, python2-pytest-cov.
(python-ipykernel)[properties): Declare python2-ipykernel as the
python2- variant.
2020-03-11 15:19:54 +02:00
2bc5d5d57e
gnu: python-ipython: Declare python2 variant.
...
* gnu/packages/python-xyz.scm (python-ipython)[properties]: Declare
python2-ipython as the python2- variant.
2020-03-11 15:07:27 +02:00
f255a193be
gnu: docker: Update to 19.03.7.
...
* gnu/packages/docker.scm (docker): Update to 19.03.7.
(docker-cli): Update to 19.03.7.
2020-03-11 12:07:19 +01:00
e4b5bdf799
gnu: r-ggsignif: Fix build.
...
* gnu/packages/cran.scm (r-ggsignif): Add knitr to native-inputs in order to
build the vignette.
2020-03-11 09:31:26 +01:00
d716a4742a
gnu: t1lib: Use HTTPS home page.
...
* gnu/packages/fontutils.scm (t1lib)[home-page]: Use HTTPS.
2020-03-11 03:52:12 +01:00
8b6d893d17
gnu: desktop-file-utils: Update to 0.24.
...
* gnu/packages/freedesktop.scm (desktop-file-utils): Update to 0.24.
2020-03-11 03:52:12 +01:00
d4c09245ec
gnu: desktop-file-utils: Don't use NAME in source URI.
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* gnu/packages/freedesktop.scm (desktop-file-utils)[source]: Hard-code NAME.
2020-03-11 03:52:12 +01:00
Mark H Weaver
Carl Dong
Alexandru-Sergiu Marton
Ludovic Courtès
Ludovic Courtès
Amar Singh
Efraim Flashner
Ricardo Wurmus
Pierre Neidhardt
Felix Gruber
Guillaume Le Vaillant
Tobias Geerinckx-Rice
Leo Famulari
Marius Bakke
Christopher Lemmer Webber
Damien Cassou
Mădălin Ionel Patrașcu
Raghav Gururajan
Danny Milosavljevic
Roel Janssen