5fa0448590
gnu: r-spatstat-linnet: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.3-0.
[propagated-inputs]: Add r-spatstat-sparse.
2021-07-28 22:26:54 +02:00
d3b8b6703c
gnu: r-spatstat-core: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.3-0.
2021-07-28 22:26:53 +02:00
9a5901e0ad
gnu: r-spatstat-geom: Update to 2.2-2.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-2.
2021-07-28 22:26:53 +02:00
7b41c93061
gnu: r-hardhat: Update to 0.1.6.
...
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.6.
2021-07-28 22:26:53 +02:00
35f9a754d8
gnu: r-isoband: Update to 0.2.5.
...
* gnu/packages/cran.scm (r-isoband): Update to 0.2.5.
2021-07-28 22:26:53 +02:00
49979bf735
gnu: r-seewave: Update to 2.1.8.
...
* gnu/packages/cran.scm (r-seewave): Update to 2.1.8.
2021-07-28 22:26:53 +02:00
03e4676138
gnu: r-showtext: Update to 0.9-3.
...
* gnu/packages/cran.scm (r-showtext): Update to 0.9-3.
2021-07-28 22:26:53 +02:00
73871946a1
gnu: r-sysfonts: Update to 0.8.4.
...
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.4.
2021-07-28 22:26:53 +02:00
c1919dacf4
gnu: r-styler: Update to 1.5.1.
...
* gnu/packages/cran.scm (r-styler): Update to 1.5.1.
2021-07-28 22:26:53 +02:00
b21351870a
gnu: r-rttf2pt1: Update to 1.3.9.
...
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.9.
2021-07-28 22:26:53 +02:00
d5e5809b94
gnu: r-adegenet: Update to 2.1.4.
...
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.4.
2021-07-28 22:26:52 +02:00
c84a2c1209
gnu: r-wk: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-wk): Update to 0.5.0.
2021-07-28 22:26:52 +02:00
d57de3da9c
gnu: r-compositions: Update to 2.0-2.
...
* gnu/packages/cran.scm (r-compositions): Update to 2.0-2.
2021-07-28 22:26:52 +02:00
f04f40880c
gnu: r-parallelly: Update to 1.27.0.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.27.0.
2021-07-28 22:26:52 +02:00
a6044a7573
gnu: r-rgl: Update to 0.107.10.
...
* gnu/packages/cran.scm (r-rgl): Update to 0.107.10.
[propagated-inputs]: Remove r-manipulatewidget and r-shiny.
2021-07-28 22:26:52 +02:00
c210531551
gnu: r-afex: Update to 1.0-1.
...
* gnu/packages/cran.scm (r-afex): Update to 1.0-1.
2021-07-28 22:26:52 +02:00
40648a1e20
gnu: r-credentials: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-credentials): Update to 1.3.1.
2021-07-28 22:26:52 +02:00
9e56bb33d5
gnu: r-sjplot: Update to 2.8.9.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.9.
[propagated-inputs]: Add r-datawizard.
2021-07-28 22:26:52 +02:00
ce8738a194
gnu: r-performance: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-performance): Update to 0.7.3.
[propagated-inputs]: Add r-datawizard.
2021-07-28 22:26:52 +02:00
7a8081f23e
gnu: r-bayestestr: Update to 0.10.5.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.5.
[propagated-inputs]: Add r-datawizard.
2021-07-28 22:26:51 +02:00
4590f8b338
gnu: r-glmmtmb: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.2.
2021-07-28 22:26:51 +02:00
0af4e95b33
gnu: r-survey: Update to 4.1-1.
...
* gnu/packages/cran.scm (r-survey): Update to 4.1-1.
2021-07-28 22:26:51 +02:00
dce011239f
gnu: r-doby: Update to 4.6.11.
...
* gnu/packages/cran.scm (r-doby): Update to 4.6.11.
2021-07-28 22:26:23 +02:00
c633e5f40a
gnu: r-flextable: Update to 0.6.7.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.6.7.
2021-07-28 22:26:23 +02:00
8816d7e130
gnu: r-officer: Update to 0.3.19.
...
* gnu/packages/cran.scm (r-officer): Update to 0.3.19.
2021-07-28 22:26:23 +02:00
3bc970802b
gnu: r-renv: Update to 0.14.0.
...
* gnu/packages/cran.scm (r-renv): Update to 0.14.0.
2021-07-28 22:26:23 +02:00
db54fbe2b1
gnu: r-rastervis: Update to 0.50.3.
...
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.3.
2021-07-28 22:26:23 +02:00
1ba8c81f97
gnu: r-vim: Update to 6.1.1.
...
* gnu/packages/cran.scm (r-vim): Update to 6.1.1.
2021-07-28 22:26:23 +02:00
76211cbc27
gnu: r-utf8: Update to 1.2.2.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.2.2.
[native-inputs]: Add r-rmarkdown.
2021-07-28 22:26:23 +02:00
165ecfb477
gnu: r-cli: Update to 3.0.1.
...
* gnu/packages/cran.scm (r-cli): Update to 3.0.1.
2021-07-28 22:26:23 +02:00
57f04c64bc
gnu: r-laplacesdemon: Update to 16.1.6.
...
* gnu/packages/cran.scm (r-laplacesdemon): Update to 16.1.6.
2021-07-28 22:26:23 +02:00
efaa549993
gnu: r-fastmatch: Update to 1.1-3.
...
* gnu/packages/cran.scm (r-fastmatch): Update to 1.1-3.
2021-07-28 22:26:23 +02:00
e1a57fcdfa
gnu: r-jpeg: Update to 0.1-9.
...
* gnu/packages/cran.scm (r-jpeg): Update to 0.1-9.
2021-07-28 22:26:23 +02:00
16c3ebaf14
gnu: r-rvest: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-rvest): Update to 1.0.1.
2021-07-28 22:26:23 +02:00
24ad9180fe
gnu: r-ggpp: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.1.
[propagated-inputs]: Remove r-generics and r-plyr.
2021-07-28 22:26:22 +02:00
55a8d2f369
gnu: r-googlesheets4: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-cli.
2021-07-28 22:26:22 +02:00
6e27f274b2
gnu: Add r-lobstr.
...
* gnu/packages/cran.scm (r-lobstr): New variable.
2021-07-28 22:26:22 +02:00
f39deacd21
gnu: Add r-datawizard.
...
* gnu/packages/cran.scm (r-datawizard): New variable.
2021-07-28 22:26:22 +02:00
9ac9bc6051
gnu: r-with-tests: Hardcode path to coreutils’ rm
...
When running R in a container like this
guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 'Sys.timezone()'
it would print an additional line
sh: rm: command not found
before exiting.
* gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
to patch call to `rm` and rename phase to reflect what it does now.
2021-07-28 22:26:19 +02:00
042b6971d7
gnu: Add python-modin.
...
* gnu/packages/python-science.scm (python-modin): New variable.
2021-07-28 20:31:06 +02:00
251bfbcfaa
gnu: Add python-distributed.
...
* gnu/packages/python-science.scm (python-distributed): New variable.
2021-07-28 20:31:06 +02:00
41431282e2
gnu: Add python-zict.
...
* gnu/packages/python-xyz.scm (python-zict): New variable.
2021-07-28 20:31:06 +02:00
45ee09dc96
gnu: Add python-heapdict.
...
* gnu/packages/python-xyz.scm (python-heapdict): New variable.
2021-07-28 20:31:06 +02:00
532cfc5bd2
gnu: python-pyarrow: Fix parquet support.
...
Co-authored-by: Phil Beadling <phil@beadling.co.uk>.
* gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases
patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET.
[propagated-inputs]: Add "include" output of apache-arrow package.
2021-07-28 20:31:06 +02:00
3a150e9f12
gnu: python-pandas: Update to 1.3.0.
...
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0.
[arguments]: Adjust check phase.
2021-07-28 20:31:06 +02:00
242221e380
gnu: python-dask: Update to 2021.7.1.
...
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.7.1.
[arguments]: Do not skip test_shuffle.
2021-07-28 20:31:05 +02:00
f01d4b197a
gnu: python-partd: Update to 1.2.0.
...
* gnu/packages/python-xyz.scm (python-partd): Update to 1.2.0.
2021-07-28 20:31:05 +02:00
27c6cab2c6
gnu: python-numexpr: Update to 2.7.3.
...
* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.7.3.
2021-07-28 20:31:05 +02:00
145296dbcb
gnu: python-cloudpickle: Update to 1.6.0.
...
* gnu/packages/python-xyz.scm (python-cloudpickle-testpkg): New variable.
(python-cloudpickle): Update to 1.6.0; inherit from
python-cloudpickle-testpkg.
[source]: Fetch from git repository.
[native-inputs]: Add python-cloudpickle-testpkg; replace python-tornado with
python-tornado-6.
2021-07-28 20:31:05 +02:00
2422fbf6b2
gnu: python2-cloudpickle: Override version, source, and native-inputs.
...
* gnu/packages/python-xyz.scm (python2-cloudpickle)[version]: Explicitly set
to 1.3.0.
[source]: Copy from base package.
[native-inputs]: Do not inherit; copy.
2021-07-28 20:31:05 +02:00
c486a61c27
gnu: cmake: Update to 3.21.1.
...
* gnu/packages/cmake.scm (cmake): Update to 3.21.1.
[arguments]: Skip one more test.
2021-07-28 20:31:05 +02:00
c20c9e1685
gnu: julia-distances: Update flakey tests.
...
* gnu/packages/julia-xyz.scm (julia-distances)[arguments]: Adjust the
custom 'skip-flakey-tests phase.
2021-07-28 16:05:33 +03:00
fcc900bd52
gnu: julia-docstringextensions: Skip tests.
...
* gnu/packages/julia-xyz.scm (julia-docstringextensions)[arguments]:
Skip tests.
2021-07-28 16:05:33 +03:00
21747ffa87
gnu: julia-datavalues: Skip tests.
...
* gnu/packages/julia-xyz.scm (julia-datavalues)[arguments]: Skip tests.
2021-07-28 16:05:33 +03:00
8832df0412
gnu: julia-compat: Update to 3.31.0.
...
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.31.0.
2021-07-28 16:05:33 +03:00
a8977845cd
gnu: global: Update to 6.6.7.
...
* gnu/packages/code.scm (global): Update to 6.6.7.
2021-07-28 16:05:33 +03:00
cbee534391
gnu: julia-jllwrappers: Add julia-preferences.
...
* gnu/packages/julia-jll.scm (julia-jllwrappers)[propagated-inputs]: Add
julia-preferences.
2021-07-28 16:05:33 +03:00
f7eaa69dc2
gnu: Add julia-preferences.
...
* gnu/packages/julia-xyz.scm (julia-preferences): New variable.
2021-07-28 16:05:33 +03:00
6886c4960d
gnu: julia: Skip tests on aarch64-linux.
...
* gnu/packages/julia.scm (julia)[arguments]: Skip tests when building
for aarch64-linux.
2021-07-28 16:05:32 +03:00
cc85829fb9
gnu: llvm-julia: Overide build-type.
...
* gnu/packages/julia.scm (llvm-julia)[arguments]: Move CMAKE_BUILD_TYPE
config from configure-flags to build-type.
2021-07-28 16:05:32 +03:00
6adea67cb0
gnu: libuv-julia: Clean up package definition.
...
* gnu/packages/julia.scm (libuv-julia)[source]: Use git-file-name.
[build-system]: Remove field.
[arguments]: Remove field.
2021-07-28 16:05:32 +03:00
55bb794248
gnu: julia: Update to 1.6.1.
...
* gnu/packages/julia.scm (julia): Update to 1.6.1.
[arguments]: Adjust custom 'prepare-deps phase. Remove custom
'fix-precompile phase. Add new 'shared-objects-path phase to fix paths
to shared objects. Add new 'adjust-test-suite phase to adjust for
differences in bundled vs packaged libraries. Adjust custom
'disable-broken-tests phase for new version. Add symlinks to libs in
'symlink-libraries phase. In make-flags add more finegrained compilation
targets for x86_64-linux. Update make-flags for changes since last
version.
[inputs]: Add nghttp2:lib, gfortran:lib, curl-ssh. Remove arpack-ng,
curl. Sort alphabetically.
[native-inputs]: Add nss-certs. Sort alphabetically.
(libuv-julia): Update to newer revision.
(libunwind-julia)[source]: Add new patch.
(llvm-julia): Inherit from llvm-11.
[source]: Update patch list.
[arguments]: Apply minority of the Julia specific patches in
'julia-patches phase.
[inputs]: Add julia patches.
Co-Authored-By: Nicolò Balzarotti <nicolo@nixo.xyz>.
Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Co-Authored-By: Efraim Flashner <efraim@flashner.co.il>.
2021-07-28 16:05:32 +03:00
0faf5f1dd6
gnu: Add curl-ssh.
...
* gnu/packages/curl.scm (curl-ssh): New hidden package.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:32 +03:00
2d4fa647b7
gnu: julia-staticarrays: Update to 1.2.5
...
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.5
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:32 +03:00
1978d716a9
gnu: openlibm: Fix cross-compiling.
...
* gnu/packages/maths.scm (openlibm)[arguments]: Add configure-flag to
use cc-for-target.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:31 +03:00
4709b74bc8
gnu: openlibm: Update to 0.7.4.
...
* gnu/packages/maths.scm (openlibm): Update to 0.7.4.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:31 +03:00
7db9573e86
gnu: Add pcre2-10.36.
...
* gnu/packages/pcre.scm (pcre2-10.36): New variable.
Co-Authored-By: zimoun <zimoun.toutoune@gmail.com>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:31 +03:00
2459cff9ae
gnu: Add utf8proc-2.6.1.
...
* gnu/packages/textutils.scm (utf8proc-2.6.1): New variable.
Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:31 +03:00
7d93b21ab1
gnu: glibc-for-bootstrap: Update patch.
...
There was/is something funny going on with the bootstrap glibc. The
symbol for posix_spawnp points to getopt_r. Which in turn leads to a
lot of crashed in tests later on. I extended the glibc-bootstrap patch
to work around this bug.
* gnu/packages/patches/glibc-bootstrap-system.patch: Adjust patch to
work correctly with new architectures.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-28 16:05:31 +03:00
8afd85538a
gnu: global: Fix lisp install dir.
...
* gnu/packages/code.scm (global)[arguments]: Adjust custom 'post-install
phase to move emacs files to the correct directory.
2021-07-28 16:05:31 +03:00
b07c7f0da6
gnu: python-pikepdf: Update to 2.16.0.
...
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.0.
2021-07-27 21:35:52 +02:00
d0ec73907c
gnu: telescope: Update to 0.4.1.
...
* gnu/packages/web-browsers.scm (telescope): Update to 0.4.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:36:22 +02:00
f87f60a8b5
gnu: emacs-link-hint: Update to 0.1-3.9fbf196.
...
* gnu/packages/emacs-xyz.scm (emacs-link-hint): Update to 0.1-3.9fbf196.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:28 +02:00
f62c140f47
gnu: emacs-elpher: Update to 2.10.3.
...
* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 2.10.3.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:28 +02:00
4c4cf3d692
gnu: emacs-typit: Update to 0.2.1-2.fa125bf.
...
* gnu/packages/emacs-xyz.scm (emacs-typit): Update to 0.2.1-2.fa125bf.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:28 +02:00
143d21fa95
gnu: emacs-typit: Fix dictionary location.
...
Move the dictionary directory to be next to the lisp files, where it is
expected to be.
* gnu/packages/emacs-xyz.scm (emacs-typit)[arguments]
<#:phases>: Remove install-dictionaries phase.
<#:include>: Include dictionaries.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:27 +02:00
3968134a4d
gnu: emacs-org-roam-bibtex: Update to 0.6.0.
...
* gnu/packages/emacs-xyz.scm (emacs-org-roam-bibtex): Update to 0.6.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:27 +02:00
3c76399745
gnu: emacs-org-roam: Update to 2.0.0.
...
* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 2.0.0.
[propagated-inputs]: Add emacs-magit.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:27 +02:00
157f2f7f03
gnu: Add emacs-org-cv.
...
* gnu/packages/emacs-xyz.scm (emacs-org-cv): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-27 19:10:26 +02:00
8cfd9ef831
gnu: mesa-opencl-icd: Use absolute path for the library.
...
* gnu/packages/gl.scm (mesa-opencl-icd): Use absolute path for OpenCL
platform library in "mesa.icd" file. With this patch setting
LD_LIBRARY_PATH=$LIBRARY_PATH is no longer needed to run OpenCL
applications.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-27 18:36:34 +02:00
5dc4fe1004
gnu: sudo: Update to 1.9.7p2.
...
* gnu/packages/admin.scm (sudo): Update to 1.9.7p2.
2021-07-27 18:10:15 +02:00
95c214e23d
gnu: WebKitGTK: Update to 2.32.3 [security fixes]
...
Fixes CVE-2021-{21775,21779,30663,30665,30689,30724,30749,30795,30797,30799}.
https://webkitgtk.org/security/WSA-2021-0004.html
* gnu/packages/webkit.scm (webkitgtk): Update to 2.32.2.
2021-07-27 11:02:08 -04:00
87f6491e67
gnu: Remove rust-bat-0.17.
...
* gnu/packages/crates-io.scm (rust-bat-0.17): Remove variable.
2021-07-27 16:34:13 +02:00
29ef6d0154
gnu: nushell: Update to 0.34.0.
...
* gnu/packages/shells.scm (nushell):
(rust-nu-ansi-term-0.34):
(rust-nu-command-0.34):
(rust-nu-data-0.34):
(rust-nu-engine-0.34):
(rust-nu-errors-0.34):
(rust-nu-parser-0.34):
(rust-nu-plugin-0.34):
(rust-nu-plugin-binaryview-0.34):
(rust-nu-plugin-chart-0.34):
(rust-nu-plugin-fetch-0.34):
(rust-nu-plugin-from-bson-0.34):
(rust-nu-plugin-from-sqlite-0.34):
(rust-nu-plugin-inc-0.34):
(rust-nu-plugin-match-0.34):
(rust-nu-plugin-post-0.34):
(rust-nu-plugin-ps-0.34):
(rust-nu-plugin-query-json-0.34):
(rust-nu-plugin-sys-0.34):
(rust-nu-plugin-to-bson-0.34):
(rust-nu-plugin-to-sqlite-0.34):
(rust-nu-plugin-tree-0.34):
(rust-nu-plugin-xpath-0.34):
(rust-nu-pretty-hex-0.34):
(rust-nu-protocol-0.34):
(rust-nu-stream-0.34):
(rust-nu-test-support-0.34):
(rust-nu-value-ext-0.34): Update to 0.34.0.
(rust-nu-path-0.34):
(rust-nu-completion-0.34): New variable.
2021-07-27 16:34:13 +02:00
20e6b7ccd2
gnu: Add rust-mp4-0.8.
...
* gnu/packages/crates-io.scm (rust-mp4-0.8): New variable.
2021-07-27 16:34:12 +02:00
9a38d56e3a
gnu: Add rust-calamine-0.18.
...
* gnu/packages/crates-io.scm (rust-calamine-0.18): New variable.
(rust-calamine-0.17): Inherit from above.
2021-07-27 16:34:12 +02:00
88625b2424
gnu: rust-indexmap-1: Update to 1.7.0.
...
* gnu/packages/crates-io.scm (rust-indexmap-1): Update to 1.7.0.
2021-07-27 16:34:12 +02:00
8eb20852dc
gnu: rust-minus-3: Update to 3.4.0.
...
* gnu/packages/crates-io.scm (rust-minus-3): Update to 3.4.0.
2021-07-27 16:34:11 +02:00
5cbfd5c035
gnu: Add rust-ndarray-0.15.
...
* gnu/packages/crates-io.scm (rust-ndarray-0.15): New variable.
(rust-ndarray-0.13): Inherit from above.
2021-07-27 16:34:11 +02:00
355ffee485
gnu: Add rust-matrixmultiply-0.3.
...
* gnu/packages/crates-io.scm (rust-matrixmultiply-0.3): New variable.
(rust-matrixmultiply-0.2): Inherit from above.
2021-07-27 16:34:10 +02:00
240c73451a
gnu: Add rust-thread-tree-0.3.
...
* gnu/packages/crates-io.scm (rust-thread-tree-0.3): New variable.
2021-07-27 16:34:10 +02:00
8df7c61944
gnu: Add rust-shadow-rs-0.6.
...
* gnu/packages/crates-io.scm (rust-shadow-rs-0.6): New variable.
(rust-shadow-rs-0.5): Inherit from above.
2021-07-27 16:34:10 +02:00
0f32429a7a
gnu: rust-unicode-segmentation-1: Update to 1.8.0.
...
* gnu/packages/crates-io.scm (rust-unicode-segmentation-1): Update to 1.8.0.
2021-07-27 16:34:09 +02:00
aadcdd2261
gnu: Add rust-tui-0.15.
...
* gnu/packages/crates-io.scm (rust-tui-0.15): New variable.
(rust-tui-0.14): Inherit from above.
2021-07-27 16:34:09 +02:00
38a3cacca0
gnu: Add rust-s3handler-0.7.
...
* gnu/packages/crates-io.scm (rust-s3handler-0.7): New variable.
(rust-s3handler-0.6): Inherit from above.
2021-07-27 16:34:09 +02:00
3aed641224
gnu: Add rust-rstest-0.10.
...
* gnu/packages/crates-io.scm (rust-rstest-0.10): New variable.
2021-07-27 16:34:08 +02:00
afec299536
gnu: Add rust-polars-0.14.
...
* gnu/packages/crates-io.scm (rust-polars-0.14): New variable.
(rust-polars-0.13): Inherit from above.
2021-07-27 16:34:08 +02:00
f686977bec
gnu: Add rust-polars-lazy-0.14.
...
* gnu/packages/crates-io.scm (rust-polars-lazy-0.14): New variable.
(rust-polars-lazy-0.13): Inherit from above.
2021-07-27 16:34:08 +02:00
cd6a1e5f40
gnu: Add rust-polars-io-0.14.
...
* gnu/packages/crates-io.scm (rust-polars-io-0.14): New variable.
(rust-polars-io-0.13): Inherit from above.
2021-07-27 16:34:07 +02:00
ed18419fe8
gnu: Add rust-simdutf8-0.1.
...
* gnu/packages/crates-io.scm (rust-simdutf8-0.1): New variable.
2021-07-27 16:34:07 +02:00
08dfad9918
gnu: Add rust-polars-arrow-0.14.
...
* gnu/packages/crates-io.scm (rust-polars-arrow-0.14): New variable.
(rust-polars-arrow-0.13): Inherit from above.
2021-07-27 16:34:07 +02:00
293d4064dc
gnu: Add rust-polars-core-0.14.
...
* gnu/packages/crates-io.scm (rust-polars-core-0.14): New variable.
(rust-polars-core-0.13): Inherit from above.
2021-07-27 16:34:06 +02:00
f75044e780
gnu: rust-parquet-4: Update to 4.4.0.
...
* gnu/packages/crates-io.scm (rust-parquet-4): Update to 4.4.0.
2021-07-27 16:34:06 +02:00
e376b00c31
gnu: Add rust-overload-0.1.
...
* gnu/packages/crates-io.scm (rust-overload-0.1): New variable.
2021-07-27 16:34:06 +02:00
483e806865
gnu: rust-arrow-4: Update to 4.4.0.
...
* gnu/packages/crates-io.scm (rust-arrow-4): Update to 4.4.0.
2021-07-27 16:34:06 +02:00
2c78572bd9
gnu: Add rust-is-executable-1.
...
* gnu/packages/crates-io.scm (rust-is-executable-1): New variable.
(rust-is-executable): Remove variable.
2021-07-27 16:34:05 +02:00
daaa3ba07f
gnu: Add rust-sysinfo-0.18.
...
* gnu/packages/crates-io.scm (rust-sysinfo-0.18): New variable.
(rust-sysinfo-0.16): Inherit from above.
2021-07-27 16:34:05 +02:00
0ca6e13612
gnu: certbot, python-acme: Update to 1.17.0.
...
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.17.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-27 02:15:19 -04:00
e76423cd49
gnu: calibre: Update to 5.21.0.
...
* gnu/packages/ebook.scm (calibre)[version]: Update to 5.21.0.
2021-07-27 01:25:55 -04:00
e17f063627
gnu: gmnisrv: Fix configuration search path.
...
Look in /etc for configuration files rather than
/gnu/store/...-gmnisrv-.../etc.
gnu/packages/web.scm (gmnisrv)[arguments]<#:configure-flags>: Set
--sysconfdir.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-27 02:42:39 +05:30
b459c39adb
gnu: gmnisrv: Remove dependency on /etc/mime.types.
...
Remove the dependency on /etc/mime.types (fixes #49233 ).
gnu/packages/web.scm (gmnisrv)[arguments]<#:configure-flags>: Set
--with-mimedb to directly use mime.types from mailcap.
[propagated-inputs]: Move mailcap to...
[inputs]: ...here (/etc/mime.types no longer need in profiles).
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-27 02:42:39 +05:30
3344f70e49
gnu: gmnisrv: Use #:make-flags, and cross-compile.
...
gnu/packages/web.scm (gmnisrv)[arguments]<#:phases>{set-variables}: Move
'CC=' to...
<#:make-flags>: ...here, and support cross-compilation with (cc-for-target).
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-27 02:42:38 +05:30
274fcfb251
gnu: gmnisrv: Disable tests using #:tests?.
...
gnu/packages/web.scm (gmnisrv)[arguments]<#:phases>: Undelete check
phase, and...
<#:tests?>: ...disable tests here instead.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-27 02:42:38 +05:30
3314764193
gnu: Mutt: Update to 2.1.1.
...
* gnu/packages/mail.scm (mutt): Update to 2.1.1.
2021-07-26 17:04:49 -04:00
684259dfbc
gnu: Add python-flask-misaka.
...
* gnu/packages/python-web.scm (python-flask-misaka): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-26 19:42:49 +02:00
56de60cc27
gnu: interception-dual-function-keys: Minor fixes.
...
* gnu/packages/linux.scm (interception-dual-function-keys)
[arguments]<#:make-flags>: Make use of cc-for-target, cxx-for-target and
%output.
<#:phases>{check}: Undelete phase. Disable tests instead with...
<#:tests?>: ...this. New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-26 19:42:49 +02:00
3bbbb24f4c
gnu: interception-dual-function-keys: Update to 1.4.0.
...
* gnu/packages/linux.scm (interception-dual-function-keys)
[version]: Update to 1.4.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-26 19:42:49 +02:00
0a1ea2b0fb
gnu: ghc-8.8: Update to 8.8.4.
...
* gnu/packages/haskell.scm (ghc-8.8): Update to 8.8.4.
[arguments]: Add 'fix-cc-reference phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-26 19:42:49 +02:00
599b173b11
gnu: guix-jupyter: Update to 0.2.2.
...
* gnu/packages/package-management.scm (guix-jupyter): Update to 0.2.2.
2021-07-26 19:42:49 +02:00
456776e1ea
gnu: linux-libre 5.4: Update to 5.4.135.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.135.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-26 13:40:14 -04:00
1f6793f53e
gnu: linux-libre 5.10: Update to 5.10.53.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.53.
(deblob-scripts-5.10, linux-libre-5.10-pristine-source): Update hashes.
2021-07-26 13:40:14 -04:00
559f80467d
gnu: linux-libre 5.13: Update to 5.13.5.
...
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.5.
(deblob-scripts-5.13, linux-libre-5.13-pristine-source): Update hashes.
2021-07-26 13:40:08 -04:00
93c6895910
gnu: linux-libre 4.4: Update to 4.4.276.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.276.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-26 09:34:39 -04:00
3a55b7a46e
gnu: linux-libre 4.9: Update to 4.9.276.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.276.
(linux-libre-4.9-pristine-source): Update hash.
2021-07-26 09:34:39 -04:00
beb67e7098
gnu: linux-libre 4.14: Update to 4.14.240.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.240.
(linux-libre-4.14-pristine-source): Update hash.
2021-07-26 09:34:39 -04:00
b779450284
gnu: linux-libre 4.19: Update to 4.19.198.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.198.
(linux-libre-4.19-pristine-source): Update hash.
2021-07-26 09:34:39 -04:00
75e647c884
gnu: linux-libre 5.4: Update to 5.4.134.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.134.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-26 09:34:39 -04:00
2c1382efd8
gnu: linux-libre 5.10: Update to 5.10.52.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.52.
(deblob-scripts-5.10, linux-libre-5.10-pristine-source): Update hashes.
2021-07-26 09:34:38 -04:00
766d13721f
gnu: linux-libre: Update to 5.12.19.
...
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.19.
(deblob-scripts-5.12, linux-libre-5.12-pristine-source): Update hashes.
2021-07-26 09:34:38 -04:00
e286e16e75
gnu: linux-libre 5.13: Update to 5.13.4.
...
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.4.
(deblob-scripts-5.13, linux-libre-5.13-pristine-source): Update hashes.
2021-07-26 09:34:38 -04:00
151c54609b
gnu: uim: Enable 'uim-fep' to support the use of uim in text terminal.
...
* gnu/packages/xorg.scm (uim)[inputs]: add ncurses.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-07-26 18:58:52 +08:00
3e5eff8c30
gnu: Add seqan 3.
...
* gnu/packages/bioinformatics.scm (seqan): Rename this variable...
(seqan-2): ...to this.
(seqan): New variable for seqan3.
(flexbar)[native-inputs]: Update name for seqan 2.
2021-07-26 11:54:21 +02:00
99ca1ae4f8
gnu: Add segemehl.
...
* gnu/packages/bioinformatics.scm (segemehl): New variable.
2021-07-26 11:08:13 +02:00
d16694b546
gnu: bat: Update to 0.18.2.
...
* gnu/packages/rust-apps.scm (bat): Update to 0.18.2.
2021-07-26 10:51:43 +02:00
088e9b5b1b
gnu: Add rust-nix-0.21.
...
* gnu/packages/crates-io.scm (rust-nix-0.21): New variable.
(rust-nix-0.20): Inherit from above.
2021-07-26 10:50:12 +02:00
7b669da767
gnu: rust-memoffset-0.6: Update to 0.6.4.
...
* gnu/packages/crates-io.scm (rust-memoffset-0.6): Update to 0.6.4.
2021-07-26 10:49:06 +02:00
69ce8f3ce1
gnu: xournalpp: Update to 1.1.0.
...
* gnu/packages/pdf.scm (xournalpp): Update to 1.1.0.
2021-07-26 10:42:44 +02:00
4831f4e8c9
gnu: Update Zrythm Git URLs.
...
* gnu/packages/audio.scm (libaudec, ztoolkit)[source, home-page]: Adjust to Gitea.
* gnu/packages/music.scm (zplugins)[source]: Likewise.
2021-07-26 10:24:25 +02:00
11d8a47bcf
gnu: Remove libgnomeprintui.
...
* gnu/packages/gnome.scm (libgnomeprintui): Remove unused variable.
2021-07-26 09:47:22 +02:00
e8563962ee
gnu: Remove libgnomeprint.
...
* gnu/packages/gnome.scm (libgnomeprint): Remove unused variable.
2021-07-26 09:47:22 +02:00
781a2befee
gnu: gsegrafix: Update to 1.0.7.2.
...
This keeps this ancient package on life support for now.
* gnu/packages/maths.scm (gsegrafix): Update to 1.0.7.2.
[source]: Download from gsegrafix-experimental's Savannah.
[arguments]: Drop obsolete LDFLAGS. Disable static library build.
[inputs]: Remove libgnomecanvas, libbonoboui, libgnomeui,
libgnomeprintui, and popt. Add glib and gtk+.
2021-07-26 09:47:22 +02:00
1829e9d80f
gnu: wireshark: Update to 3.4.7.
...
* gnu/packages/networking.scm (wireshark): Update to 3.4.7.
2021-07-26 09:45:58 +02:00
778af012ef
gnu: rosegarden: Update to 21.06.1.
...
* gnu/packages/music.scm (rosegarden): Update to 21.06.1.
2021-07-26 09:41:22 +02:00
16f0bdf5f0
gnu: python-pikepdf: Update to 2.15.1.
...
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.15.1.
2021-07-26 09:33:38 +02:00
35b3c7c8eb
gnu: giac: Update to 1.7.0-21.
...
* gnu/packages/algebra.scm (giac): Update to 1.7.0-21.
2021-07-26 09:30:39 +02:00
eb1a5dddda
gnu: mgba: Update to 0.9.2.
...
* gnu/packages/emulators.scm (mgba): Update to 0.9.2.
2021-07-26 09:22:05 +02:00
11afd46519
gnu: ruby-stackprof: Build (more) reliably.
...
* gnu/packages/ruby.scm (ruby-stackprof)[arguments]: Add a new
'skip-dubious-test phase.
2021-07-26 02:52:34 +02:00
900c2ca8f7
gnu: ruby-stackprof: Update to 0.2.17.
...
* gnu/packages/ruby.scm (ruby-stackprof): Update to 0.2.17.
[arguments]: Add a new 'build-tests phase.
2021-07-26 02:52:28 +02:00
3e8537c146
gnu: java-commons-codec: Update to 1.15.
...
* gnu/packages/java.scm (java-commons-codec): Update to 1.15.
2021-07-25 23:14:48 +02:00
94ec198506
gnu: java-commons-codec: Fix build on non-huge-memory machines.
...
* gnu/packages/java.scm (java-commons-codec)[arguments]: Add a new
'skip-ravenous-test phase.
2021-07-25 23:14:47 +02:00
f91fceb920
gnu: java-commons-codec: Don't return #t from phases.
...
* gnu/packages/java.scm (java-commons-codec)[arguments]: Don't return #t
from phases.
2021-07-25 23:14:47 +02:00
a3b6e90448
gnu: emacs-ebuild-mode: Update to 1.53.
...
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.53.
2021-07-25 21:56:32 +02:00
35d4bca2e9
gnu: emacs-counsel-etags: Update to 1.9.17.
...
* gnu/packages/emacs-xyz.scm (emacs-counsel-etags): Update to 1.9.17.
[arguments]: Disable tests.
2021-07-25 21:55:06 +02:00
4755de6ed8
gnu: emacs-corfu: Update to 0.10.
...
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.10.
2021-07-25 21:38:35 +02:00
1d8521db83
gnu: emacs-modus-themes: Update to 1.5.0.
...
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 1.5.0.
2021-07-25 21:35:25 +02:00
1bcf2da570
gnu: emacs-flycheck-grammalecte: Update to 2.0.
...
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Update to 2.0.
2021-07-25 21:31:40 +02:00
b81ab18404
gnu: emacs-aggressive-indent: Update to 1.10.0.
...
* gnu/packages/emacs-xyz.scm (emacs-aggressive-indent): Update to 1.10.0.
2021-07-25 21:29:36 +02:00
edca830c32
gnu: emacs-pyim: Update to 3.9.3.
...
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.3.
2021-07-25 21:23:16 +02:00
6fd2f881cf
gnu: emacs-ebdb: Update to 0.7.
...
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.7.
2021-07-25 21:22:38 +02:00
cbeafb35e8
gnu: marble-qt: Fix source file name.
...
* gnu/packages/geo.scm (marble-qt)[source]: Add a FILE-NAME field.
2021-07-25 19:53:05 +02:00
199f9e9170
gnu: marble-qt: Fix Git source URL.
...
The package failed to build with:
fatal: remote error: Please use the https: protocol to connect to anongit
Fix the protocol & follow the subsequent HTTP redirection.
* gnu/packages/geo.scm (marble-qt)[source]: Fix upstream URL.
2021-07-25 19:53:05 +02:00
5079aa2afd
gnu: r-structuralvariantannotation: Update to 1.8.1.
...
The previous 1.8.0 source tarball has vanished.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
2021-07-25 19:39:11 +02:00
8854acd434
gnu: Add python-hyperopt.
...
* gnu/packages/machine-learning.scm (python-hyperopt): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25 17:56:58 +02:00
aaf94ec750
gnu: Add emacs-ob-async.
...
* gnu/packages/emacs-xyz.scm (emacs-ob-async): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25 17:50:17 +02:00
ed9d146734
gnu: oil: Respect #:tests?.
...
* gnu/packages/shells.scm (oil)[arguments]: Respect #:tests? in the custom
check phase.
2021-07-25 20:08:27 +05:30
d1318cb4de
gnu: oil: Update to 0.9.0.
...
* gnu/packages/shells.scm (oil): Update to 0.9.0.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-25 19:58:05 +05:30
769326cf18
gnu: Add marble-qt.
...
* gnu/packages/patches/marble-qt-add-qt-headers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/geo.scm (marble-qt): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25 13:51:45 +02:00
a92dfbce30
gnu: gmnisrv: Update to 0-2.32854b7.
...
Update to latest commit. gmnisrv uses v3 X509 certificates now, and so
"requires fresh certificates, which could break clients with strict
trust-on-first-use policies."
gnu/packages/web.scm (gmnisrv): Update to 0-2.32854b7.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-25 15:56:02 +05:30
32b02fd99c
gnu: emacs-nov-el: Update to 0.3.4.
...
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.4.
[arguments]<#:emacs>: Use emacs for libxml.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25 12:13:01 +02:00
f703bef87a
gnu: weston: Enable some features.
...
* gnu/packages/freedesktop.scm (weston)[inputs]: Add freerdp,
gstreamer and gst-plugins-base.
[configure-flags](backend-rdp,remoting): Remove flags.
(backend-default): New flag.
2021-07-25 02:00:22 -04:00
dd3de0c475
gnu: freerdp: Propagate some inputs as per pkg-config files.
...
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Move libxkbcommon,
openssl and wayland to ...
[propagated-inputs]: ... here.
2021-07-25 02:00:22 -04:00
e0fc091319
gnu: weston: Fix package inputs.
...
The newly added inputs are referenced by the package but was missing in
the package definition. Some of these inputs might have been used
by the package indirectly via propagation from other inputs. The moved
inputs are referenced in pkg-config files.
* gnu/packages/freedesktop.scm (weston)[inputs]: Add glib, libdrm,
libpng, libx11 and libxcb. Move libxkbcommon and wayland to ...
[propagated-inputs]: ... here. Add pixman.
2021-07-25 02:00:22 -04:00
17a8656bc7
gnu: weston: Update to 9.0.0 and adjust arguments+inputs accordingly.
...
* gnu/packages/freedesktop.scm (weston)[version]: Update to 9.0.0.
[configure-flags](c_link_args): New flag.
(simple-dmabuf-drm): Remove flag.
[native-inputs]: Add mscgen.
[inputs]: Add pipewire.
2021-07-25 01:59:49 -04:00
45881ea747
gnu: perl-http-cookiejar: Update to 0.012.
...
This fixes its build which had started to fail due to a time-bomb:
Expires=Wed, 09 Jun 2021 10:18:14 GMT
in an examples.t test cookie.
* gnu/packages/web.scm (perl-http-cookiejar): Update to 0.012.
2021-07-25 01:55:45 +02:00
c7b51b799d
gnu: esmtp: Fix build with libesmtp >= 1.1.0.
...
* gnu/packages/mail.scm (esmtp)[source]: Add patch.
* gnu/packages/patches/esmtp-add-lesmtp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-07-24 23:59:07 +02:00
e463e09dc2
services: dhcpd: Fix activation with IPv6 configuration.
...
* gnu/services/networking.scm (dhcpd-activation): Pass the IP version
parameter to dhcpd.
2021-07-24 15:38:03 +02:00
fe0c3aee02
gnu: Add feeder.
...
* gnu/packages/lisp-xyz.scm (cl-feeder, ecl-feeder, sbcl-feeder): New variables.
2021-07-24 11:58:45 +02:00
c3c003be69
gnu: java-xmlpull2: Use mirrored source and archived home page.
...
* gnu/packages/xml.scm (java-xmlpull2)[source]: Download from a Gentoo
distfiles mirror.
[home-page]: Point to an archive.org snapshot.
2021-07-23 23:29:34 +02:00
277f58040b
gnu: graphviz: Use HTTPS home page.
...
* gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
2021-07-23 17:29:34 +02:00
379bb236d4
gnu: php: Update to 7.4.21.
...
* gnu/packages/php.scm (php): Update to 7.4.21.
[arguments]: Remove trailing #t's.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
2021-07-23 17:29:34 +02:00
c4918b54bb
gnu: tmux-themepack: Tweak description.
...
* gnu/packages/tmux.scm (tmux-themepack)[description]: Tweak.
2021-07-23 17:02:29 +02:00
efcd669c5a
gnu: tmux-themepack: Update to 1.1.0.
...
* gnu/packages/tmux.scm (tmux-themepack): Update to 1.1.0.
[arguments]: Install only selected files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-23 17:02:29 +02:00
7273b66945
gnu: modules: Avoid FHS file names in 'add.modules'.
...
* gnu/packages/package-management.scm (modules)[arguments]: Add
'patch-add-modules' phase.
2021-07-23 17:02:29 +02:00
8bcd920c71
gnu: Add modules.
...
* gnu/packages/package-management.scm (modules): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-23 17:02:28 +02:00
1665bb0cec
gnu: hpcguix-web: Update to 0.1.0.
...
* gnu/packages/web.scm (hpcguix-web): Update to 0.1.0.
[arguments]: In 'wrap-program' phase, change "/bin/run" to
"/bin/hpcguix-web".
[inputs]: Add BASH-MINIMAL.
* gnu/services/web.scm (hpcguix-web-shepherd-service): Run
"/bin/hpcguix-web".
2021-07-23 17:02:28 +02:00
b48bc8953d
gnu: pari-gp: Update to 2.13.2.
...
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.2.
2021-07-23 15:28:03 +02:00
4e19ad0fde
gnu: gnome-maps: Update to 3.38.5.
...
* gnu/packages/geo.scm (gnome-maps): Update to 3.38.5.
2021-07-23 12:41:01 +02:00
785c96fbe1
gnu: Add radvd.
...
* gnu/packages/admin.scm (radvd): New variable.
2021-07-23 11:33:36 +02:00
89ea0918a4
gnu: Add drawterm.
...
* gnu/packages/plan9.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-07-22 19:52:53 +08:00
d98fc80ffb
gnu: Add cl-libxml2.
...
* gnu/packages/lisp-xyz.scm (cl-libxml2, ecl-cl-libxml2, sbcl-cl-libxml2): New
variables.
2021-07-22 13:03:52 +02:00
aa2686c368
gnu: r-opencpu: Update to 2.2.4.
...
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.4.
2021-07-22 11:37:25 +02:00
9cfa6c3c58
gnu: Add r-opencpu
...
* gnu/packages/cran.scm: (r-opencpu): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-07-22 11:37:25 +02:00
2b6dd1bde5
gnu: Add r-protolite
...
* gnu/packages/cran.scm: (r-protolite): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-07-22 11:37:25 +02:00
c5baff1796
gnu: Add r-webutils
...
* gnu/packages/cran.scm (r-webutils): New variable.
2021-07-22 11:37:21 +02:00
b05a1eb5e3
gnu: Add python-dolfin-adjoint.
...
* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable.
2021-07-22 10:03:53 +01:00
4c63efa5e3
gnu: Add abjad-ext-ipython.
...
* gnu/packages/music.scm (abjad-ext-ipython): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22 11:50:14 +03:00
ccfcbadd68
gnu: Add abjad-ext-nauert.
...
* gnu/packages/music.scm (abjad-ext-nauert): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22 11:48:45 +03:00
a909460099
gnu: Add abjad-ext-rmakers.
...
* gnu/packages/music.scm (abjad-ext-rmakers): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22 11:48:41 +03:00
454460ca55
gnu: abjad: Remove obsolete phase.
...
* gnu/packages/music.scm (abjad)[arguments]: Remove custom 'patch-source
phase.
2021-07-22 11:14:33 +03:00
91c42e4767
gnu: abjad: Move lilypond to inputs.
...
* gnu/packages/music.scm (abjad)[native-inputs]: Move lilypond ...
[inputs]: ... to here.
2021-07-22 11:13:57 +03:00
18f9e21b18
gnu: abjad: Improve description.
...
* gnu/packages/music.scm (abjad)[description]: Improve abjad's
description.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22 11:06:58 +03:00
dd7c2d2b1d
gnu: abjad: Move python-ply to propagated-inputs.
...
* gnu/packages/music.scm (abjad)[ntaive-inputs]: Move python-ply ...
[propagated-inputs]: ... to here.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22 11:05:41 +03:00
5535d5435e
gnu: python-abjad: Rename to abjad.
...
* gnu/packages/music.scm (abjad): Rename from python-abjad.
(python-abjad): Keep as deprecated package.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22 11:04:10 +03:00
fd8aea010f
gnu: python-pysam: Make the check phase honor the tests? argument.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust
custom 'check phase to skip tests when #:tests is #f.
2021-07-22 10:58:22 +03:00
877792a6a7
gnu: python-pysam: Update to 0.16.0.1.
...
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.16.0.1.
[arguments]: Update custom 'check phase.
[propagated-inputs]: Replace htslib-1.9 with 1.10.
[native-inputs]: Add python-pytest. Replace samtools-1.9 with 1.10,
bcftools-1.9 with 1.10.
(bcftools-1.9): Replace with bcftools-1.10.
[native-inputs]: Replace htslib-1.9 with 1.10.
(samtools-1.9): Replace with samtools-1.10.
[inputs]: Replace htslib-1.9 with 1.10.
2021-07-22 10:57:41 +03:00
cc4906d13b
gnu: Add htslib-1.10.
...
* gnu/packages/bioinformatics.scm (htslib-1.10): New variable.
2021-07-22 10:50:58 +03:00
309b38bed6
gnu: python-biopython: Update to 1.73.
...
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
2021-07-22 09:14:12 +03:00
55db762b31
gnu: onionshare: Update to 2.3.2.
...
* gnu/packages/tor.scm (onionshare-cli, onionshare): Update to 2.3.2.
(onionshare)[inputs]: Add python-colorama.
[arguments]: Insert "import pytest" for later "pytest.mark.skip".
2021-07-21 23:08:14 -05:00
e9d47ee718
gnu: Add emacs-seeing-is-believing.
...
* gnu/packages/emacs-xyz.scm (emacs-seeing-is-believing): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-22 00:02:33 +02:00
de1ae96184
gnu: guile-git: Update to 0.5.2.
...
Fixes <https://issues.guix.gnu.org/48855 >.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
* gnu/packages/guile.scm (guile-git): Update to 0.5.2.
2021-07-22 00:02:30 +02:00
1f07d4436c
gnu: extempore: Update to 0.8.9.
...
* gnu/packages/music.scm (extempore): Update to 0.8.6.
[source]: Portaudio is no more in-tree.
[arguments]: Load external libraries through patched CMakeLists.txt.
[phases]: Symlink assets.
* gnu/packages/patches/extempore-unbundle-external-dependencies.patch:
Update accordingly.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-07-21 23:00:51 +02:00
403a689625
gnu: Add python-sparqlkernel.
...
* gnu/packages/jupyter.scm (python-sparqlkernel): New variable.
2021-07-21 13:36:09 +02:00
281808170a
gnu: Add python-sparqlwrapper.
...
* gnu/packages/rdf.scm (python-sparqlwrapper): New variable.
2021-07-21 13:36:09 +02:00
d57c34d26b
gnu: Add python-bash-kernel.
...
* gnu/packages/jupyter.scm (python-bash-kernel): New variable.
2021-07-21 13:36:08 +02:00
73830b5da3
gnu: Add r-battenberg.
...
* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
2021-07-21 13:36:08 +02:00
ed636babfa
gnu: Add r-ascat.
...
* gnu/packages/bioinformatics.scm (r-ascat): New variable.
2021-07-21 13:36:08 +02:00
690df95d1a
gnu: Add nanosv.
...
* gnu/packages/bioinformatics.scm (nanosv): New variable.
2021-07-21 13:36:08 +02:00
2b665b8a49
gnu: Add python-pyvcf.
...
* gnu/packages/bioinformatics.scm (python-pyvcf): New variable.
2021-07-21 13:36:08 +02:00
086c6800cf
gnu: checkm: Rename and update to 1.1.3.
...
Renamed from python2-checkm-genome to checkm to better reflect its
status as standalone-application and support for Python 3.
* gnu/packages/bioinformatics.scm (python2-checkm-genome): Redirect to…
(checkm): …here and update to 1.1.3.
[propagated-inputs]: Move to inputs.
[inputs]: Use Python 3 dependencies.
[home-page]: Point to real home-page.
2021-07-21 13:36:08 +02:00
18a02fe7ca
gnu: Add tombo.
...
* gnu/packages/bioinformatics.scm (tombo): New variable.
2021-07-21 13:36:07 +02:00
117988b7ca
gnu: Add r-rmisc.
...
* gnu/packages/cran.scm (r-rmisc): New variable.
2021-07-21 13:36:07 +02:00
2925d84196
gnu: Add r-glinternet.
...
* gnu/packages/statistics.scm (r-glinternet): New variable.
2021-07-21 13:36:07 +02:00
f711ba28d2
gnu: Add r-naniar.
...
* gnu/packages/statistics.scm (r-naniar): New variable.
2021-07-21 13:36:07 +02:00
f6802a9247
gnu: Add r-norm.
...
* gnu/packages/statistics.scm (r-norm): New variable.
2021-07-21 13:36:07 +02:00
ce27cde262
gnu: txr: Reduce closure size.
...
* gnu/packages/lisp.scm (txr)[inputs]: Replace bash by bash-minimal.
2021-07-21 10:57:27 +02:00
2f41e9540d
gnu: catfish: Update to 4.16.1.
...
* gnu/packages/xfce.scm (catfish): Update to 4.16.1.
[inputs]: Add xfconf.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-21 01:26:15 +02:00
9d21c67d7b
gnu: Add libgpiod.
...
* gnu/packages/linux.scm (libgpiod): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-20 22:36:51 +02:00
4a136a3b7f
gnu: dealii: Update to 9.3.1 and clean up.
...
The cleanup notably:
* Builds and installs the documentation into a separate doc output (in
the process moving around some files erroneously installed into the root
directory); and
* Removes unnecessary inputs and moves some inputs into
propagated-inputs (the candidates of which were determined with a search
for "include.*LIBNAME" in include/deal.II).
* gnu/packages/maths.scm (dealii): Reword comments.
[version]: Update to 9.3.1.
[outputs]: New field including doc output.
[native-inputs]: New field.
[inputs]: Sort them. Remove p4est (deal.II interfaces with it only when
MPI is enabled). Move boost, suitesparse and tbb to...
[propagated-inputs]: ...here. New field including hdf5, which is
actually supported in deal.II without MPI.
[arguments]<#:tests?>: New argument. The tests were not being run before
anyway.
<#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag.
[-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md,
README.md, detailed.log and summary.log files from being installed in
the root directory (though note that the logs are removed in the new
remove-build-logs phase).
[-DDEAL_II_DOCHTML_RELDIR]: New flag.
[-DDEAL_II_COMPILE_EXAMPLES]: New flag.
[-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory
from being installed in the root directory.
[-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been
resolved.
<#:phases>{remove-build-logs}: New phase.
[home-page]: Add trailing slash.
(dealii-openmpi): Use package/inherit.
[inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer
interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi,
p4est-openmpi, petsc-openmpi and slepc-openmpi to...
[propagated-inputs]: ...here. New field.
[arguments]<#:configure-flags>: Rename cf variable to flags.
<#:phases>{mpi-setup}: Remove phase which is unused because the tests
are disabled.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-20 22:36:51 +02:00
2c1cdbb19b
gnu: xorg.scm: Add missing module import.
...
This is a follow-up to 1a4c7ddefe
2021-07-20 22:19:12 +03:00
526171269d
gnu: Add python-tldr.
...
* gnu/packages/python-xyz.scm (python-tldr): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 22:10:35 +03:00
e2dae72dab
gnu: rust-openssl-sys-extras-0.7: Skip build.
...
* gnu/packages/crates-io.scm (rust-openssl-sys-extras-0.7)
[arguments]: Skip build.
[inputs]: Remove openssl-1.0.
2021-07-20 22:04:40 +03:00
7f43bc6839
gnu: rust-openssl-0.7: Skip build.
...
* gnu/packages/crates-io.scm (rust-openssl-0.7)[arguments]: Skip build.
Remove tests keyword.
[inputs]: Remove openssl-1.0.
2021-07-20 22:02:59 +03:00
3f403bb750
gnu: rust-sha1-0.2: Skip tests.
...
* gnu/packages/crates-io.scm (rust-sha1-0.2)[arguments]: Skip tests.
[inputs]: Remove openssl-1.0.
2021-07-20 21:59:56 +03:00
d68d84ee19
gnu: gpodder: Make the check phase honor the tests? argument.
...
* gnu/packages/gpodder.scm (gpodder)[arguments]: Adjust custom 'check
phase to skip tests when #:tests? is #f.
2021-07-20 21:41:48 +03:00
c4413569f7
gnu: gpodder: Add bash-minimal.
...
* gnu/packages/gpodder.scm (gpodder)[inputs]: Add bash-minimal.
2021-07-20 21:41:48 +03:00
a2f8ec94f6
gnu: gpodder: Add python-mutagen (fixes one of its addons).
...
* gnu/packages/gpodder.scm (gpodder)[inputs]: Added python-mutagen.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 21:39:51 +03:00
1a4c7ddefe
gnu: xpra: Add bash-minimal.
...
* gnu/packages/xorg.scm (xpra)[inputs]: Add bash-minimal.
2021-07-20 21:16:09 +03:00
a4d9002bec
gnu: xpra: Update to 4.2.1.
...
* gnu/packages/xorg.scm (xpra): Update to 4.2.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 21:13:52 +03:00
e644e45aec
gnu: pipe-viewer: Correct references to youtube-dl program.
...
* gnu/packages/videos.scm (pipe-viewer)[phases](patch-source): Modify.
2021-07-20 07:54:56 -04:00
7b9c4417d5
gnu: claws-mail: Use absolute paths to referenced programs.
...
* gnu/packages/mail.scm (claws-mail)[phases](patch-source): New phase.
[inputs]: Add mailutils and sendmail.
2021-07-20 06:03:36 -04:00
541066a02f
gnu: python-graph-tool: Sort inputs alphabetically.
...
* gnu/packages/graph.scm (python-graph-tool)[native-inputs]: Sort
alphabetically.
[inputs]: Same.
[propagated-inputs]: Same.
2021-07-20 12:01:20 +03:00
b8e7b284fc
gnu: Add sequeler.
...
* gnu/packages/databases.scm (sequeler): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 12:01:20 +03:00
ac840442ee
gnu: python-graph-tool: Update to 2.43.
...
* gnu/packages/graph.scm (python-graph-tool): Update to 2.43.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 11:59:54 +03:00
59d09bfb2b
gnu: txr: Update to 266.
...
* gnu/packages/lisp.scm (txr)[version]: Update to 266.
[inputs]: Add bash.
[arguments]<#:phases>{inhibit-doc-syms-generation}: Correct the path to
doc-syms.tl to its new location.
{fix-tests}: Fix another test.
{fix-paths}: New phase.
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 10:50:04 +02:00
6a0658afa7
gnu: txr: Fix license installation.
...
The install-license-files phase was installing LICENSE-CYG when it
shouldn't have, because that license applies only to TXR builds for
Microsoft Windows; and it was also ignoring the METALICENSE file.
However, TXR's Makefile was already installing the LICENSE and
METALICENSE files into share/txr (the datadir), so redirect them into
the appropriate doc directory and delete the install-license-files
phase.
* gnu/packages/lisp.scm (txr)[arguments]<#:phases>
{fix-license-installation}: New phase.
{install-license-files}: Delete phase.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 10:09:33 +02:00
75922458af
gnu: txr: Build documentation.
...
* gnu/packages/lisp.scm (man-for-txr): New variable.
(txr)[native-inputs]: New field.
[inputs]: Move above the arguments field.
[arguments]<#:phases>{inhibit-doc-syms-generation, build-doc, install-doc}:
New phases.
{fix-tests}: Add after the unpack phase rather than after the configure
phase so that all file-modifying phases are performed after unpacking.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 10:03:30 +02:00
e1f9a10fdc
gnu: cl-authentic: Update to 0.1.2-2.4e9194d.
...
* gnu/packages/lisp-xyz.scm (sbcl-authentic): Update to 0.1.2-2.4e9194d.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 09:54:20 +02:00
d84c24935b
gnu: icedove: Update to 78.12.0 [security fixes].
...
Fixes CVE-2021-29969 and CVE-2021-29976.
* gnu/packages/gnuzilla.scm (icedove): Update to 78.12.0.
2021-07-19 21:19:32 +02:00
52058a1144
gnu: Add searx.
...
* gnu/packages/search.scm (searx): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:52 +02:00
c65183b628
gnu: Add python-langdetect.
...
* gnu/packages/python-xyz.scm (python-langdetect): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:52 +02:00
Ricardo Wurmus
Lars-Dominik Braun
Efraim Flashner
Jean-Baptiste Volatier
Franz Josef
Nicolas Goaziou
cage
Alexandr Vityazev
Simon South
Morgan Smith
Vinicius Monego
Ivan Gankevich
Tobias Geerinckx-Rice
Leo Famulari
Matthew James Kraai
Raghav Gururajan
Sarah Morgensen
jgart
Paul A. Patience
Ludovic Courtès
qblade
Arun Isaac
Felix Gruber
Wiktor Żelazny
Guillaume Le Vaillant
Pierre Neidhardt
Marius Bakke
Ludovic Courtès
Andreas Enge
Leo Prikler
宋文武
Sharlatan Hellseher
Paul Garlick
Eric Bavier
Joseph LaFreniere
Giacomo Leidi
Michael Rohleder
Tanguy Le Carrour
raingloom
Alexandre Hannud Abdo
Charles
Jonathan Brielmaier