Ricardo Wurmus
3a0229eba0
gnu: r-tximport: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
126539d1ae
gnu: r-rhdf5: Update to 2.30.1.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.30.1.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
4e5c217684
gnu: r-pcamethods: Update to 1.78.0.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.78.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
589939937d
gnu: r-msnbase: Update to 2.12.0.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.12.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
597aeb8a34
gnu: r-msnid: Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.20.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3ccf1e3c20
gnu: r-aroma-light: Update to 3.16.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.16.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
783bbe3ace
gnu: r-deseq: Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.38.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
0a6704e226
gnu: r-edaseq: Update to 2.20.0.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.20.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2beffcb558
gnu: r-interactivedisplaybase: Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.24.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
6339ea22f1
gnu: r-annotationhub: Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.18.0.
[propagated-inputs]: Add r-biocversion.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
c21bf901e2
gnu: r-fastseg: Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.32.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
fedba48bb5
gnu: r-keggrest: Update to 1.26.1.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.26.1.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
b342b20a24
gnu: r-gage: Update to 2.36.0.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.36.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
48c7ee93b7
gnu: r-genomicfiles: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.22.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
dac706c322
gnu: r-complexheatmap: Update to 2.2.0.
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* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.2.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2edb116c1c
gnu: r-dirichletmultinomial: Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.28.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e107f3df54
gnu: r-ensembldb: Update to 2.10.2.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.10.2.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e89032667d
gnu: r-organismdbi: Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.28.0.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
866810e686
gnu: r-biovizbase: Update to 1.34.1.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.34.1.
2019-12-15 15:38:59 +01:00
Ricardo Wurmus
81600df302
gnu: r-ggbio: Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.34.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
89a41696ab
gnu: r-gqtlbase: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.18.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
67d4fd523d
gnu: r-erma: Update to 1.2.0.
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* gnu/packages/bioinformatics.scm (r-erma): Update to 1.2.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
14eb0978a8
gnu: r-snpstats: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.36.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
6fff104191
gnu: r-ldblock: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.16.0.
[propagated-inputs]: Remove r-go-db and r-homo-sapiens.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
cfa93a30b4
gnu: r-gqtlstats: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.18.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
d57b6b4bae
gnu: r-gviz: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
2e13f10e89
gnu: r-sushi: Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.24.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
28329991b0
gnu: r-gwascat: Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.18.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
0a16021241
gnu: r-hitc: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.30.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
8db2915900
gnu: r-fithic: Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.12.0.
2019-12-15 15:38:58 +01:00
Ricardo Wurmus
7557bd0cce
gnu: r-hdf5array: Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.1.
[propagated-inputs]: Add r-matrix.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
1f5d262cfd
gnu: r-rhdf5lib: Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.8.0.
[arguments]: Update patches.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
8804e4b48e
gnu: r-beachmat: Update to 2.2.1.
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* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.2.1.
[propagated-inputs]: Add r-matrix.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
376f2f35b6
gnu: r-singlecellexperiment: Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.8.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
bf23416fe1
gnu: r-scater: Update to 1.14.5.
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* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.5.
[propagated-inputs]: Remove r-dplyr.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
964634fa44
gnu: r-scran: Update to 1.14.5.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.5.
[propagated-inputs]: Remove r-dynamictreecut.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
c81ccd3076
gnu: r-delayedmatrixstats: Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.8.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
758dfc61ee
gnu: r-mzid: Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.24.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
dc9d4832b9
gnu: r-vsn: Update to 3.54.0.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.54.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
af87ac3aa7
gnu: r-annotationfilter: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.10.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
43058ca656
gnu: r-chipseq: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.36.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
746e1f062e
gnu: r-copywriter: Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.18.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
32f6059635
gnu: r-affy: Update to 1.64.0.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.64.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
51ca216bdf
gnu: r-affyio: Update to 1.56.0.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.56.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
065c305ca5
gnu: r-methylkit: Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.12.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2a6ce98b17
gnu: r-sva: Update to 3.34.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.34.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
d12328f9fe
gnu: r-protgenerics: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.18.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
3381dc4b5c
gnu: r-mzr: Update to 2.20.0.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.20.0.
2019-12-15 15:38:56 +01:00
Efraim Flashner
5a4aab2193
gnu: Add r-qtl2.
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* gnu/packages/bioinformatics.scm (r-qtl2): New variable.
2019-12-10 13:11:44 +02:00
Pierre Neidhardt
88f06fd015
gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
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* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
javascript module instead of lisp.
2019-12-05 16:23:06 +01:00
