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128715 Commits (ae4c47571eacf434b809fc7089f8d97de3f4799b)

Author SHA1 Message Date
Ricardo Wurmus ae4c47571e
gnu: r-degreport: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.5.
[propagated-inputs]: Add r-dendextend and r-stringi.

Change-Id: I73fe47489449b46406b879dba0318d02dc3c7614
 2023-12-15 17:47:36 +01:00
Ricardo Wurmus 3dc5ddb82a
gnu: r-cellid: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.1.

Change-Id: I74f0e39907eb293f84a2ee9d29ef5feab15b698a
 2023-12-15 17:47:36 +01:00
Ricardo Wurmus f5f19ac400
gnu: r-biocversion: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.1.

Change-Id: I844d321dc3716d2658ddd75a81d844f8b302af53
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus 71c0e7eea6
gnu: r-bandits: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.1.

Change-Id: Ied13d156cb7762fd6f86a5a0cccff302b684530d
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus ea9441de8f
gnu: r-aseb: Update to 1.46.3. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.3.

Change-Id: I7fb905224840f598261fceba67207cd71e7a73d9
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus 2dc2636444
gnu: r-anvil: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.1.

Change-Id: I2ea83e4a11a1268f222201480563fe1c9ce1060b
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus dafbf36e1f
gnu: r-agimicrorna: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.52.0.

Change-Id: I0f739590d115b5dc354833cdac2ba3c400ddd995
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus 8341726732
gnu: r-rhdf5lib: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.1.
[propagated-inputs]: Add r-biocstyle and r-stringr.
[native-inputs]: Add r-rmarkdown.

Change-Id: I18c06543abee8e4a715f1ef120ce600562804225
 2023-12-15 17:27:44 +01:00
Ricardo Wurmus c5f2535346
gnu: r-reportingtools: Update to 2.42.3. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.42.3.
[source]: Adjust snippet.
[arguments]: Use minify-build-system in 'process-javascript phase.
[native-inputs]: Remove r-knitr; add r-rmarkdown.

Change-Id: I1c00e1a1d8095f40da29b57b8e82de493fcff26e
 2023-12-15 17:25:58 +01:00
Ricardo Wurmus 9013d47d5e
gnu: r-affycoretools: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.74.0.

Change-Id: I4197d73e62477bb64182181229c8a33f3048406a
 2023-12-15 16:52:00 +01:00
Ricardo Wurmus 93597fc39c
gnu: pyscenic: Update to 0.11.2-1.5f170fd. 
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.11.2-1.5f170fd.
[build-system]: Use pyproject-build-system.
[arguments]: Patch setup.py.
[propagated-inputs]: Add python-pyarrow.

Change-Id: I3acd7c921c2c44741c0afd0bbda011f63ed14c42
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 46b1e717cf
gnu: python-ctxcore: Update to 0.2.0. 
* gnu/packages/bioinformatics.scm (python-ctxcore): Update to 0.2.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Replace python-pyarrow-0.16 with python-pyarrow.

Change-Id: I3f72f9872b438c0a624d23becb5d7828f1986da7
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus b2aa1d7cd0
gnu: r-readwriter: Update to 1.5.3-1.91373c4. 
* gnu/packages/bioinformatics.scm (r-readwriter): Update to 1.5.3-1.91373c4.
[propagated-inputs]: Remove r-gdata.

Change-Id: Ice16d3b07d7446ca864fd30e46110c9060b83081
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 07f85bb057
gnu: r-stringendo: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (r-stringendo): Update to 0.6.0.
[propagated-inputs]: Remove r-devtools and r-usethis; add r-clipr.

Change-Id: Iff4a841beb51558ba7d5d8e87ee56e7c3f2b2710
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 4d92caef51
gnu: r-liana: Add missing inputs. 
* gnu/packages/bioinformatics.scm (r-liana)[propagated-inputs]: Add r-basilisk
and r-basilisk-utils.

Change-Id: I5dce058a446245e6797cca1c35485f38b3da819a
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 0ec25720ab
gnu: python-vaex-core: Add missing input. 
* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add
python-click.

Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 07acdb1552
gnu: r-desctools: Update to 0.99.52. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.52.
[propagated-inputs]: Remove r-bh; add r-cli.

Change-Id: Idca54e4796494b1d5635412c8f15bf639383ee0a
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 3e17f2ff9c
gnu: r-bayesfactor: Update to 0.9.12-4.6. 
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.6.

Change-Id: Iac17532bb38081a536790af3c5a36ad4791905b9
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 53082f702d
gnu: r-cairo: Update to 1.6-2. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.6-2.

Change-Id: I519f1bef619873d81c38b272251075b4c8c88c68
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 040c86f2c8
gnu: r-tclust: Update to 1.5-5. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.5-5.

Change-Id: I8526d099efd09fc458deb4feb090eb83671549ea
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 541d828f97
gnu: r-robust: Update to 0.7-3. 
* gnu/packages/statistics.scm (r-robust): Update to 0.7-3.

Change-Id: Ia4908566898547b7d8d14138f776de78f8f4a9fd
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 01c7baaf43
gnu: r-pcapp: Update to 2.0-4. 
* gnu/packages/statistics.scm (r-pcapp): Update to 2.0-4.

Change-Id: Ie0ad4cd7ddf9c649294f4ba76fc3aa6422f5e81c
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus a5df4d20ee
gnu: r-robustbase: Update to 0.99-1. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-1.

Change-Id: I01fe9d9a24471eaa93439169ad197fbaf54a8446
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus 45e59dae8f
gnu: r-mclust: Update to 6.0.1. 
* gnu/packages/statistics.scm (r-mclust): Update to 6.0.1.

Change-Id: Iabc63d21f904d92205db4364053537f580658af5
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus f7da625a37
gnu: r-diptest: Update to 0.77-0. 
* gnu/packages/statistics.scm (r-diptest): Update to 0.77-0.

Change-Id: Ic0dcd061fc82a6ef5bc4eb9d222245c00052e0aa
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus c5e8b34bde
gnu: r-fastica: Update to 1.2-4. 
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-4.

Change-Id: Ia0f61d080891317f825837e42aee70e94eff83dc
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus f2041fe211
gnu: r-ggthemes: Update to 5.0.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 5.0.0.
[propagated-inputs]: Add r-lifecycle.

Change-Id: Ie190e236dd4bfc951725535774071eea60488ce8
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus b21ed00b81
gnu: r-gtools: Update to 3.9.5. 
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.5.

Change-Id: I99642b15227fa007cfd86dc378afdd5f54d4567f
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 9592148434
gnu: r-mvtnorm: Update to 1.2-4. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-4.

Change-Id: I3d40983459a474bea7e19809b3c030672d2ff0bc
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus e7c61edc2f
gnu: r-r-utils: Update to 2.12.3. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.3.

Change-Id: Ia0e99369dce4fd9aae06dac10b2ce7ba3906fc5a
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus d17289bad2
gnu: r-e1071: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-14.

Change-Id: Ib5fec1c275936a335e612e65f417d92dadc8a972
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus e1a846a257
gnu: r-rtsne: Update to 0.17. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.17.

Change-Id: Ida34d5e8ee0ac9eb12e90bfd7c620f527113b0a4
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus a7e3473c9b
gnu: r-segmented: Update to 2.0-0. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-0.

Change-Id: I879ef86dfaf80f8dbabdae18136c2524dbbea11b
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus cdf28e5e11
gnu: r-xml: Update to 3.99-0.16. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.

Change-Id: Ic0dd6c2146f73b7add5038d469c1eeda9713b3f2
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 00594a76e1
gnu: r-rsqlite: Update to 2.3.4. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.4.
[propagated-inputs]: Add r-rlang.

Change-Id: Id2ab593e43b30470fe51dbe1c516611770752967
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 18ed7e0a00
gnu: r-rcpparmadillo: Update to 0.12.6.6.1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.6.1.

Change-Id: I310dbae6349098ef2f35e78fb1a035c32c613b16
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 92489d0766
gnu: r-git2r: Update to 0.33.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.33.0.

Change-Id: Ia88d5022eaa74367616d8011342e84ee83977ae9
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 16801b7e14
gnu: r-desc: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-desc): Update to 1.4.3.
[propagated-inputs]: Remove r-rprojroot.

Change-Id: I4cbb34eb7981da3684b24df508464da05f2c356f
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 77931b17ff
gnu: r-checkmate: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-checkmate): Update to 2.3.1.

Change-Id: Ieb3c8b049ca19b4cf348a536aa03377b33303f08
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 10e649db3e
gnu: r-xml2: Update to 1.3.6. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.6.
[propagated-inputs]: Add r-cli and r-rlang.

Change-Id: Ibc8d72f136cadd41d07edeefe6612e440ded17fb
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus ac224a303f
gnu: r-data-table: Update to 1.14.10. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.10.

Change-Id: I12b5c3fed5924c21e1892234e8ce445d545a7193
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 6c50ce5775
gnu: r-dplyr: Update to 1.1.4. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.4.

Change-Id: I166f005358284d5d253e1e9eb722d7bca502fd4a
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus c8fdf422e4
gnu: r-testthat: Update to 3.2.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.2.1.
[propagated-inputs]: Remove r-ellipsis.

Change-Id: If4b41bd4b0e1f6aa00e19303aa57a960090fe208
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus e63220843b
gnu: r-markdown: Update to 1.12. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.12.

Change-Id: I36aed1e9570705a5d9b6d7f03511c2ea7297998e
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus ad25078d14
gnu: r-svglite: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-svglite): Update to 2.1.3.

Change-Id: I4fcd181e414904baede631896a46f0d17df94094
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 0fd9a9dc54
gnu: r-gdtools: Update to 0.3.5. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.5.

Change-Id: I78eb7839ccb83ce60df4ee1bdd007d96d0323f6b
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 0b9590d359
gnu: r-stringi: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.8.2.

Change-Id: If949487428acacea3db66a603d4a07ee5f30f18c
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 16418b676e
gnu: r-rpart: Update to 4.1.23. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1.23.

Change-Id: I75093127c46729952be6d55b802ed1241f2861b7
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus 43a4104468
gnu: r-nlme: Update to 3.1-164. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-164.

Change-Id: I5fbdbd09d5e720a8a5ce01088f9d4b8e51805432
 2023-12-15 16:13:13 +01:00
Ricardo Wurmus fd4bb4a54d
gnu: r-matrix: Update to 1.6-4. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-4.

Change-Id: I7c535d013241057c9546ae51f1a056c534e22f42
 2023-12-15 16:13:13 +01:00