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107031 Commits (aeabddcfc576961c8c6697b64408bdf034104b9e)

Author SHA1 Message Date
Marius Bakke aeabddcfc5
gnu: QEMU: Don't provide --firmwarepath for user-mode binaries. 
* gnu/packages/virtualization.scm (qemu)[arguments]: Remove --firmwarepath
from the user-mode emulation configure invocation.
 2022-12-22 16:50:47 +01:00
Efraim Flashner c1d543203e
gnu: openvpn: Update to 2.5.8. 
* gnu/packages/vpn.scm (openvpn): Update to 2.5.8.
 2022-12-22 14:28:21 +02:00
Ricardo Wurmus d8a9d55b57
gnu: Add r-bedtorch. 
* gnu/packages/bioinformatics.scm (r-bedtorch): New variable.
 2022-12-22 11:18:02 +01:00
Ricardo Wurmus 6d2f312b23
gnu: Add r-rhtslib12. 
* gnu/packages/bioinformatics.scm (r-rhtslib12): New variable.
 2022-12-22 11:17:52 +01:00
Ricardo Wurmus 2a4930a1e6
gnu: Add wiggletools. 
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
 2022-12-22 10:29:20 +01:00
Efraim Flashner 7c2dab7dd4
gnu: xterm: Update to 377. 
* gnu/packages/xorg.scm (xterm): Update to 377.
 2022-12-22 11:00:56 +02:00
Vagrant Cascadian 0744540d09
gnu: guile-ssh: Update to 0.16.0. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.0.
 2022-12-21 22:15:15 -08:00
Andrew Tropin 30143cdad2
gnu: fheroes2: Update to 1.0.0. 
* gnu/packages/games.scm (fheroes2): Update to 1.0.0.
 2022-12-22 09:59:39 +04:00
Navid Afkhami 87c3fab854
gnu: Add python-episcanpy. 
* gnu/packages/bioinformatics.scm (python-episcanpy): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-22 00:17:43 +01:00
Navid Afkhami d07543b886
gnu: Add python-bamnostic. 
* gnu/packages/bioinformatics.scm (python-bamnostic): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-22 00:14:05 +01:00
Ricardo Wurmus 9e495087d2
gnu: Add vembrane. 
* gnu/packages/bioinformatics.scm (vembrane): New variable.
 2022-12-21 23:12:41 +01:00
Ricardo Wurmus 1194cb1c40
gnu: python-plastid: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add build phases 'unpack-test-data and
'build-extensions.
[inputs]: Add openssl.
[native-inputs]: Add test data.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus bc4eac5d79
gnu: python-pysam: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0.
[build-system]: Use pyproject-build-system.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus 50948b8c3d
gnu: htslib: Update to 1.16. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.16.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus e34639c262
gnu: pbbam: Use htslib 1.14. 
* gnu/packages/bioinformatics.scm (pbbam)[propagated-inputs]: Replace htslib
with htslib-1.14.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus 5ccc017389
gnu: Add htslib-1.14. 
* gnu/packages/bioinformatics.scm (htslib-1.14): New variable.
 2022-12-21 23:12:40 +01:00
pukkamustard fe5836feaf
gnu: Add ocaml5.0-merlin. 
* gnu/packages/ocaml.scm (ocaml5.0-merlin): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:42 +01:00
pukkamustard 8ed74a1787
gnu: Add ocaml5.0-dot-merlin-reader. 
* gnu/packages/ocaml.scm (ocaml5.0-dot-merlin-reader): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:40 +01:00
pukkamustard 134480a381
gnu: Add ocaml5.0-merlin-lib. 
* gnu/packages/ocaml.scm (ocaml5.0-merlin-lib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:38 +01:00
pukkamustard f127f0fbf3
gnu: Update ocaml-merlin-lib to 4.7-414. 
* gnu/packages/ocaml.scm (ocaml-merlin-lib): Update to 4.7-414.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:31 +01:00
pukkamustard cb1fe1c690
gnu: Add ocaml5.0-eio-main. 
* gnu/packages/ocaml.scm (ocaml5.0-eio-main): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:28 +01:00
pukkamustard 417be516de
gnu: Add ocaml5.0-eio-linux. 
* gnu/packages/ocaml.scm (ocaml5.0-eio-linux): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:24 +01:00
pukkamustard c986522877
gnu: Add ocaml-uring. 
* gnu/packages/ocaml.scm (ocaml-uring): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:22 +01:00
pukkamustard 2b335e87f7
gnu: Add ocaml5.0-eio-luv. 
* gnu/packages/ocaml.scm (ocaml5.0-eio-luv): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:19 +01:00
pukkamustard 14fae62df8
gnu: Add ocaml5.0-eio. 
* gnu/packages/ocaml.scm (ocaml5.0-eio): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:16 +01:00
pukkamustard 2cb15f8501
gnu: ocaml-mdx: Move inputs to propagated-inputs. 
* gnu/packages/ocaml.scm (ocaml-mdx): Move inputs to propagated-inputs.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:12 +01:00
pukkamustard f883cb9ecd
gnu: Add ocaml-bechamel. 
* gnu/packages/ocaml.scm (ocaml-bechamel): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:09:38 +01:00
pukkamustard 8160d05e83
gnu: Add ocaml5.0-ctypes 
* gnu/packages/ocaml.scm (ocaml5.0-ctypes): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:09:23 +01:00
pukkamustard 74f5ddef81
gnu: Add ocaml-lwt-dllist. 
* gnu/packages/ocaml.scm (ocaml-lwt-dllist): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:08:54 +01:00
pukkamustard 048217e73c
gnu: Add ocaml5.0-crowbar. 
* gnu/packages/ocaml.scm (ocaml5.0-crowbar): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:08:50 +01:00
pukkamustard 7a19cb115f
gnu: Update ocaml-odoc to 2.2.0. 
* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.2.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:08:39 +01:00
pukkamustard e3a2f0447b
gnu: Add ocaml5.0-ppx-expect. 
* gnu/packages/ocaml.scm (ocaml5.0-ppx-expect): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:08:19 +01:00
pukkamustard fdf2b2e459
gnu: Update ocaml-qcheck to 0.20. 
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.20.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:07:51 +01:00
pukkamustard 17f5a0da47
gnu: Update ocaml-ppxlib to 0.25.1. 
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.25.1.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:07:47 +01:00
pukkamustard 11c1621b53
gnu: Add ocaml5.0-base. 
* gnu/packages/ocaml.scm (ocaml5.0-base): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:07:28 +01:00
pukkamustard be31153390
gnu: Add ocaml-hmap. 
* gnu/packages/ocaml.scm (ocaml-hmap): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:07:17 +01:00
pukkamustard cdca734775
gnu: Add ocaml-optint. 
* gnu/packages/ocaml.scm (ocaml-optint): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:04:29 +01:00
pukkamustard c60fae72d8
gnu: Add ocaml-monolith. 
* gnu/packages/ocaml.scm (ocaml-monolith): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:02:44 +01:00
pukkamustard a8e1dc8edf
gnu: Add ocaml-psq. 
* gnu/packages/ocaml.scm (ocaml-psq): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:02:02 +01:00
pukkamustard 642cf11aa2
gnu: opam: Use OCaml 4.14 compiled version when building OCaml 5.0 packages. 
* gnu/packages/ocaml.scm (opam)[properties]: Add ocaml5.0-variant.
  (opam)[propagated-inputs]: Move to inputs.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 21:59:11 +01:00
pukkamustard 052ec8bcc7
guix: ocaml: Add package-with-ocaml5.0. 
* guix/build-system/ocaml.scm (package-with-ocaml5.0)
(strip-ocaml5.0-variant): New variables.
* gnu/packages/ocaml.scm (ocaml5.0-dune-bootstrap)
(ocaml5.0-dune, ocaml5.0-dune-configurator)
(ocaml5.0-csexp, ocaml5.0-result): New variables.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 21:58:56 +01:00
pukkamustard 616e818946
gnu: Add ocaml5.0-findlib 
* gnu/packages/ocaml.scm (ocaml5.0-findlib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 21:56:50 +01:00
pukkamustard a58dfd3eed
gnu: ocaml-findlib: Update to 1.9.5. 
* gnu/packages/ocaml.scm (ocaml-findlib): Update to 1.9.5.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 21:56:46 +01:00
pukkamustard e69259352a
gnu: Add ocaml-5.0. 
* gnu/packages/ocaml.scm (ocaml-5.0): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 21:56:19 +01:00
Maxim Cournoyer 30465558bd
guix system: Skip initrd modules check when using --target. 
* guix/scripts/system.scm (perform-action): Do not call CHECK-INITRD-MODULES
when the %current-target-system parameter is set.
 2022-12-21 14:22:13 -05:00
Efraim Flashner 5b19dffd98
gnu: julia-imagemetadata: Update to 0.9.8. 
* gnu/packages/julia-xyz.scm (julia-imagemetadata): Update to 0.9.8.
[arguments]: Add phase to skip greyscale test.
[propagated-inputs]: Remove julia-indirectarrays; add julia-imagebase.
[native-inputs]: Add julia-indirectarrays.
 2022-12-21 19:22:58 +02:00
Efraim Flashner ff6d119829
gnu: julia-paddedviews: Update to 0.5.11. 
* gnu/packages/julia-xyz.scm (julia-paddedviews): Update to 0.5.11.
 2022-12-21 19:22:57 +02:00
Efraim Flashner b1f31d4e47
gnu: julia-imageaxes: Update to 0.6.10. 
* gnu/packages/julia-xyz.scm (julia-imageaxes): Update to 0.6.10.
[arguments]: Add a phase to skip a greyscale test.
[propagated-inputs]: Add julia-imagebase.
[native-inputs]: Add julia-aqua and julia-documenter.
 2022-12-21 19:22:57 +02:00
Efraim Flashner bc7f25239e
gnu: julia-graphics: Update to 1.1.2. 
* gnu/packages/julia-xyz.scm (julia-graphics): Update to 1.1.2.
 2022-12-21 19:22:57 +02:00
Efraim Flashner aae30d5420
gnu: julia-axisarrays: Update to 0.4.6. 
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.6.
 2022-12-21 19:22:56 +02:00