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25698 Commits (afc438231623fceb4ec8f3aa2f8c4e8f99a3ec22)

Author SHA1 Message Date
Ricardo Wurmus 0af4df7e61
gnu: cutadapt: Update to 1.14.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
2017-11-10 15:32:42 +01:00
Ricardo Wurmus ae451b9dc2
gnu: synergy: Fix minor problems with the package definitions.
* gnu/packages/synergy.scm (synergy)[source]: Return #t in the snippet.
[arguments]: Let build phases return #t; fix typo in comment.
[home-page]: Change to redirection target.
[description]: Fix typo.
2017-11-10 15:19:06 +01:00
Jelle Licht 177475cfb5
gnu: password-store: Install passmenu script.
* gnu/packages/password-utils (password-store)
  [inputs]: Add dmenu and xdotool.
  [arguments]<#:phases>['patch-passmenu-path']: New phase.
  [arguments]<#:phases>['install-passmenu']: New phase.
2017-11-10 14:22:28 +01:00
Diego Nicola Barbato 011f57695a
gnu: Add Epson escpr printer driver.
* gnu/packages/cups.scm (escpr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-10 13:07:54 +01:00
Ludovic Courtès 195f0d05c3
git: Work around wrong default argument of 'clone'.
Fixes <https://bugs.gnu.org/29238>.
Reported by Benjamin Andresen <benny@in-ulm.de>.

* guix/git.scm (clone*): Pass second argument to 'clone'.
2017-11-10 13:07:54 +01:00
Efraim Flashner 179b7ac66d
gnu: postgresql@9.6: Update to 9.6.6 [security fixes].
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.

* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10 10:24:13 +02:00
Mark H Weaver 74bea6a036
gnu: linux-libre: Update to 4.13.12.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.12.
(%linux-libre-hash): Update hash.
2017-11-09 21:11:00 -05:00
Mark H Weaver 4cacbf33a6
gnu: linux-libre@4.9: Update to 4.9.61.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.61.
2017-11-09 21:10:14 -05:00
Mark H Weaver 3a79bd03ff
gnu: linux-libre@4.4: Update to 4.4.97.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.97.
2017-11-09 21:09:34 -05:00
Mark H Weaver f8071bea91
gnu: linux-libre@4.1: Update to 4.1.46.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.46.
2017-11-09 21:08:51 -05:00
Tobias Geerinckx-Rice 3c3d20c8f3
gnu: libpsl: Update to 0.19.1.
* gnu/packages/web.scm (libpsl): Update to 0.19.1.
2017-11-10 02:37:15 +01:00
Rutger Helling 1d8e73ba67
gnu: postgresql: Update to 10.1 [security fixes].
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.

* gnu/packages/databases.scm (postgresql): Update to 10.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-10 01:22:53 +01:00
Ludovic Courtès b70d72ac47
tests: Adjust to unbound-variable exception printer.
* tests/guix-system.sh: Adjust unbound-variable test for commit
dc856223f5.
2017-11-10 00:02:30 +01:00
Kyle Meyer e99f045cc8
gnu: Add r-directlabels.
* gnu/packages/statistics.scm (r-directlabels): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
Alex Vong d3150731a8
gnu: emacs-ahungry-theme: Update to 1.8.0.
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
Marek Benc f021382be4
gnu: Add nxbelld.
* gnu/packages/xdisorg.scm (nxbelld): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
Ludovic Courtès dc856223f5
ui: Add an 'unbound-variable' exception printer.
* guix/ui.scm (print-unbound-variable-error): New variable.
Use it as the 'unbound-variable' printer.
2017-11-09 23:54:47 +01:00
Ludovic Courtès a2985bb101
ui: Provide hints for unbound-variable errors.
* guix/ui.scm (known-variable-definition): New procedure.
(report-load-error): Handle 'unbound-variable'.
2017-11-09 23:54:47 +01:00
Ludovic Courtès 935542fbde
ui: Add 'display-hint'.
* guix/ui.scm (known-variable-definition): New procedure.
(report-load-error): Use it.
2017-11-09 23:54:47 +01:00
Efraim Flashner d8f075c3a3
gnu: %intel-compatible-systems: Re-add variable.
This is a follow-up to cfbe7b7f4c.

* gnu/packages/linux.scm (%intel-compatible-systems): New variable.
2017-11-09 22:25:48 +02:00
Mathieu Othacehe cfbe7b7f4c
gnu: linux: Add linux-libre arm kernel.
* Makefile.am (AUX_FILES): Add arm config file.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf: New file.
* gnu/packages/linux.scm (%intel-compatible-systems): Rename to
  %linux-compatible-systems and add "armhf-linux".
  (linux-libre): Adapt consequently.

The config file for arm is taken from debian armmp kernel. It's a generic
firmware for ARMv7 multiplatform compatible SoCs.
2017-11-09 20:35:11 +01:00
Leo Famulari 3694a9b33b
gnu: chromaprint: Update to 1.4.2.
* gnu/packages/mp3.scm (chromaprint): Update to 1.4.2.
2017-11-09 13:23:39 -05:00
Kei Kebreau ad9b8987f3
gnu: libwnck: Update to 3.24.1.
* gnu/packages/gnome.scm (libwnck): Update to 3.24.1.
2017-11-09 12:17:37 -05:00
Ludovic Courtès 5475749960
system: Do not set 'TZ'.
Fixes <https://bugs.gnu.org/29212>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

* gnu/system.scm (operating-system-environment-variables): Remove "TZ".
2017-11-09 09:59:21 +01:00
Ben Woodcroft da4a707c88
gnu: roary: Update to 3.11.0.
* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
Kei Kebreau e5f748a6c0
gnu: totem: Enable parallel build.
* gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t
implicitly.
2017-11-08 20:43:40 -05:00
Leo Famulari 8f220b7b41
gnu: tremc: Update to 0.9.0-1.9755b50.
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50.
[version]: Use git-version.
[source]: Use git-file-name.
2017-11-08 19:32:32 -05:00
Leo Famulari ea1f073d73
gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].
* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
2017-11-08 19:32:31 -05:00
Leo Famulari a3dd13ae0e
gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
2017-11-08 19:00:07 -05:00
Leo Famulari 7df4194b16
gnu: python-icalendar: Update to 4.0.0.
* gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
2017-11-08 18:36:29 -05:00
Leo Famulari 03b154f800
gnu: syncthing: Update to 0.14.40.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.40.
[inputs]: Add go-github-com-zillode-notify.
2017-11-08 17:24:02 -05:00
Leo Famulari 52ff28e4aa
gnu: Add go-github-com-zillode-notify.
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
2017-11-08 17:24:01 -05:00
Leo Famulari 4cf6827de3
gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Update to 0.0.0-1.8ae5f52.
[propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
2017-11-08 17:24:01 -05:00
Leo Famulari f44169c2a7
gnu: Add go-github-com-tjfoc-gmsm-sm4.
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
2017-11-08 17:24:01 -05:00
Ludovic Courtès c5a4a92f1a
gnu: Improve error reporting of the use-.*modules macros.
Suggested by Julien Lepiller and myglc2
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00106.html>.

* gnu.scm (%try-use-modules): New procedure.
(package-module-hint, service-module-hint): New procedures.
(try-use-modules): New macro.
(use-package-modules, use-service-modules, use-system-modules): Use it.
* tests/guix-system.sh: Test it.
2017-11-08 22:36:20 +01:00
Ludovic Courtès 49483f7138
services: Add 'lookup-service-types'.
* gnu/services.scm (lookup-service-types): New procedure.
* tests/services.scm ("lookup-service-types"): New test.
2017-11-08 22:31:58 +01:00
Ludovic Courtès 3943913fac
services: 'fold-service-types' includes (gnu services).
* gnu/services.scm (all-service-modules): New procedure.
(fold-service-types): Use it for the default MODULES value.
2017-11-08 22:31:58 +01:00
Ludovic Courtès a3d37f3ae5
services: 'fold-service-types' honors its seed.
* gnu/services.scm (fold-service-types): Use SEED instead of '().
2017-11-08 22:31:58 +01:00
Ludovic Courtès 23735137eb
ui: Define and honor '&error-location' and '&fix-hint' conditions.
* guix/utils.scm (&error-location, &fix-hint): New condition types.
* guix/ui.scm (report-load-error): Handle them.
(call-with-error-handling): Honor '&error-location'.
2017-11-08 22:31:58 +01:00
Ludovic Courtès 37eed374d9
ui: Introduce (guix i18n).
* guix/ui.scm (G_, N_, _P, %gettext-domain, %package-text-domain): Move
to...
* guix/i18n.scm: ... here.  New file.
2017-11-08 22:31:58 +01:00
Hartmut Goebel 0af94ad52f
gnu: service: Update comment.
* gnu/services/base.scm (guix-activation): Update comment.
2017-11-08 18:23:06 +01:00
Hartmut Goebel d9565f7d87
install: Use overlayfs instead of unionfs.
I dediced to keep adding /tmp as tmpfs since I was not able to trigger bug
while still using unionfs, so I could not verify whether this mount is still
needed with overlayfs.  Mapping /tmp to tmpfs does not harm, so we are on the
save side.

* gnu/system/install.scm (make-cow-store): Mount /gnu/store without additional
  read-only bind-mount, since in overlayfs the "lower" level is always
  read-only. Add work-dir required by overlayfs. No need to sleep anymore
  since now using the mount syscall. [unionfs]: Remove now unused function.
  (%installation-services): Update comment.
  (installation-os)[file-systems]: Update comment.
2017-11-08 18:23:06 +01:00
Hartmut Goebel c828969036
build: Use overlayfs instead of unionfs.
Overlayfs is part of the kernel, while unionfs needs FUSE.  This also reduces
the size of the initrd by ca. 4.3% (487K).

* gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter
  "unionfs"; mount using overlayfs instead of unionfs; new directory layout
  requied by overlayfs; update documentation.
  [mark-as-not-killable]: Remove now unused function

* gnu/system/linux-initrd.scm (file-system-packages): Remove now unused
  packages "unionfs-fuse/static" and thus unused related 'if'.
  (linux-modules): Replace "fuse" by "overlay".
2017-11-08 18:23:05 +01:00
Ricardo Wurmus 34260a10d7
gnu: miso: Use pypi-uri.
* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
Ricardo Wurmus e5c17b8d9d
gnu: Add r-vcd.
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
Ricardo Wurmus 018cf270a3
gnu: Add r-laeken.
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
Ricardo Wurmus 308c08d371
doc: Move paragraph about signature verification to the top.
* doc/contributing.texi (Submitting Patches): Remind contributors to verify
cryptographic signatures at the very beginning.
2017-11-08 17:19:45 +01:00
Ricardo Wurmus 697e341e74
gnu: fastcap: Use texlive-tiny.
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
Ricardo Wurmus 7e3aca2b78
gnu: librecad: Fix build.
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
Ricardo Wurmus b72b42cf02
gnu: Add r-performanceanalytics.
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00