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42699 Commits (b06cdce923d6b8b40c1238cb1a2b9db277d3394e)

Author SHA1 Message Date
Marius Bakke 3f7a3ea890
gnu: tbb: Update to 2019_U9.
* gnu/packages/tbb.scm (tbb): Update to 2019_U9.
2019-10-10 20:09:56 +02:00
Marius Bakke d253719300
gnu: whois: Update to 5.5.2.
* gnu/packages/networking.scm (whois): Update to 5.5.2.
2019-10-10 20:09:56 +02:00
Marius Bakke d519bc1350
gnu: appstream-glib: Update to 0.7.16.
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.16.
2019-10-10 20:09:55 +02:00
Marius Bakke d1eb423478
gnu: strace: Update to 5.3.
* gnu/packages/patches/strace-ipc-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (strace): Update to 5.3.
[source](patches): Remove.
[arguments]: Remove obsolete phase.
2019-10-10 20:09:55 +02:00
Marius Bakke f8026a797c
gnu: libsoup: Update to 2.68.2.
* gnu/packages/gnome.scm (libsoup): Update to 2.68.2.
[arguments]: Update #:configure-flags.  Skip tests that attempts to resolve
"subdomain.localhost".
[propagated-inputs]: Add GOOGLE-BROTLI and ZLIB.
2019-10-10 20:09:55 +02:00
Marius Bakke 2d821e4c7f
gnu: guix: Fix source checksum.
This is a follow-up to commit 6c50e1dc06.

* gnu/packages/package-management.scm (guix)[source](sha256): Update hash.
2019-10-10 20:07:59 +02:00
Efraim Flashner 2d064a466a
gnu: python-efl: Update to 1.23.0.
* gnu/packages/enlightenment.scm (python-efl): Update to 1.23.0.
2019-10-10 20:49:10 +03:00
Danny Milosavljevic 423c680d87
gnu: mate-utils: Build with a fixed version of yelp-tools.
* gnu/packages/mate.scm (mate-utils)[native-inputs]: Replace YELP-TOOLS with
YELP-TOOLS/FIXED.
2019-10-10 18:48:08 +02:00
Diego Nicola Barbato e3887d0666
gnu: emacs-org-tree-slide: Update to 2.8.14.
* gnu/packages/emacs-xyz.scm (emacs-org-tree-slide): Update to 2.8.14.
2019-10-10 18:00:08 +02:00
Ludovic Courtès 6c50e1dc06
gnu: guix: Update to fc1fe72.
* gnu/packages/package-management.scm (guix): Update to fc1fe72.
2019-10-10 17:26:53 +02:00
Ludovic Courtès 94d2ff6d9c
gnu: guix: Intern bootstrap executables before running tests.
This is a followup to 1ba0b1e6ec.

* gnu/packages/package-management.scm (guix)[arguments]: In
'copy-bootstrap-guile', copy the bootstrap executables.
[inputs]: Add "bootstrap/{bash,mkdir,tar,xz}".
2019-10-10 17:25:21 +02:00
Ludovic Courtès d3650775e0
gnu: guix-jupyter: Avoid 'specification->package'.
* gnu/packages/package-management.scm (guix-jupyter)[native-inputs]:
Avoid 'specification->package'.
2019-10-10 17:24:21 +02:00
Ludovic Courtès 8f02e5ac81
gnu: openmpi: Update to 4.0.2.
* gnu/packages/mpi.scm (openmpi): Update to 4.0.2.
2019-10-10 17:23:52 +02:00
Ludovic Courtès fc1fe722a0
gnu: Add Guix-Jupyter.
* gnu/packages/package-management.scm (guix-jupyter): New variable.
2019-10-10 11:21:37 +02:00
Ludovic Courtès 03d28531fd
gnu: gcc@9: Update to 9.2.0.
* gnu/packages/gcc.scm (gcc-9): Update to 9.2.0.
2019-10-10 11:21:37 +02:00
Danny Milosavljevic ee623903b1
gnu: python-binaryornot: Fix typo.
Follow-up to 86723f98ab.

* gnu/packages/python-xyz.scm (python-binaryornot)[arguments]<#:phases>[patch-test]:
Rename to...
[patch-test]: ...this.
2019-10-10 11:04:14 +02:00
Brian Leung 0091853199
gnu: emacs-org-ql: Patch for Helm users.
The package has a Helm component that is missing the relevant `require` statements.
* gnu/packages/patches/emacs-helm-org-ql.patch: Add.
* gnu/local.mk (emacs-helm-org-ql): Add entry.
* gnu/packages/emacs-xyz.scm: Update and add dependencies.
2019-10-10 07:01:30 +02:00
Brian Leung c2acf8f32b
gnu: emacs-gif-screencast: Update to 1.0-2.248d1e1.
* gnu/packages/emacs-xyz.scm (emacs-gif-screencast): Update to 1.0-2.248d1e1.
2019-10-10 06:50:29 +02:00
Brian Leung aa694009c7
gnu: emacs-org-ql: Update to 0.3.1-2.949a06c.
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.3.1-2.949a06c.
2019-10-10 02:22:25 +02:00
Brian Leung 8ff62eeb95
gnu: emacs-org-sidebar: Update to 0.2.
* gnu/packages/emacs-xyz.scm (emacs-org-sidebar): Update to 0.2.
2019-10-09 22:35:53 +02:00
Brian Leung 7a268eadbe
gnu: emacs-org-ql: Update to 0.3-1.af0ef30.
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.3-1.af0ef30.
2019-10-09 22:35:53 +02:00
Brian Leung ca19d88d0a
gnu: emacs-org-super-agenda: Update to 1.1.1-3.a87ca11.
* gnu/packages/emacs-xyz.scm (emacs-org-super-agenda): Update to 1.1.1-3.a87ca11.
2019-10-09 22:29:41 +02:00
Marius Bakke 03f0b5e2c6
gnu: wesnoth: Update to 1.14.9.
Fixes a build failure reported by reepca on #guix.

* gnu/packages/games.scm (wesnoth): Update to 1.14.9.
[arguments]: Add phase to disable compiler warnings from Boost headers.
2019-10-09 21:54:57 +02:00
Maxim Cournoyer 7f486d25d2
gnu: vinagre: Fix build.
* gnu/packages/gnome.scm (vinagre): Set the '--enable-compile-warnings'
configure flag to 'minimum', to prevent build failures on compilation
warnings.
2019-10-10 04:41:13 +09:00
Joseph LaFreniere 081fe5ca97
gnu: Add emacs-ssh-agency.
* gnu/packages/emacs-xyz.scm (emacs-ssh-agency): New variable.
2019-10-09 21:11:07 +02:00
Brian Leung dc3cd70d20
gnu: emacs-deft: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-deft)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-10-09 21:11:07 +02:00
Brian Leung dc6a1a8b48
gnu: emacs-emmet-mode: Update to 1.0.8-1.1acb821.
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode): Update to 1.0.8-1.1acb821.
2019-10-09 21:11:07 +02:00
Tobias Geerinckx-Rice 8325e1f8c4
gnu: fcgiwrap: Fix build with newer GCCs.
* gnu/packages/web.scm (fcgiwrap)[arguments]: Add ‘fix-CFLAGS’ phase.
2019-10-09 19:21:05 +02:00
Tobias Geerinckx-Rice e65bbec98f
gnu: perl-mail-dkim: Update to 0.57.
* gnu/packages/mail.scm (perl-mail-dkim): Update to 0.57.
2019-10-09 19:21:05 +02:00
Tobias Geerinckx-Rice 9cd100b659
gnu: python-ecdsa: Update to 0.13.3.
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.13.3.
2019-10-09 19:21:05 +02:00
Tobias Geerinckx-Rice 1329910511
gnu: opensm: Update to 3.3.22.
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.22.
2019-10-09 19:21:05 +02:00
Marius Bakke 636037fd0a
gnu: espeak: Build with the C++ 98 standard.
Fixes <https://bugs.gnu.org/37672>.
Reported by Bradley Haggerty <bradigger@gmail.com>.

* gnu/packages/speech.scm (espeak)[arguments]: Add CXXFLAGS to #:make-flags.
2019-10-09 19:09:42 +02:00
Marius Bakke e0dcd84d51
gnu: libsigc++: Update home page.
* gnu/packages/glib.scm (libsigc++)[home-page]: Update to current.
2019-10-09 19:09:41 +02:00
Danny Milosavljevic 86723f98ab
gnu: python-binaryornot: Fix build.
Fixes <https://bugs.gnu.org/37678>.

* gnu/packages/python-xyz.scm (python-binaryornot)[arguments]<#:phases>[patch-tests]:
New phase.
2019-10-09 15:59:52 +02:00
Brian Leung 3cb2d1a556
gnu: emacs-tiny: Update to 0.2.1-1.fd8a6b0.
* gnu/packages/emacs-xyz.scm (emacs-tiny): Update to 0.2.1-1.fd8a6b0.
2019-10-09 08:10:03 +02:00
Brian Leung 525ef21ba0
gnu: emacs-general: Update to 0-3.f38fb22.
* gnu/packages/emacs-xyz.scm (emacs-general): Update to 0-3.f38fb22.
2019-10-09 04:26:57 +02:00
Brian Leung 4928a37624
gnu: emacs-ccls: Update to 0.1-3.b1acc33.
* gnu/packages/emacs-xyz.scm (emacs-ccls): Update to 0.1-3.b1acc33.
2019-10-09 03:53:24 +02:00
Brian Leung 9887fc7512
gnu: emacs-dante: Update to 1.5-3.38b5894.
* gnu/packages/emacs-xyz.scm (emacs-dante): Update to 1.5-3.38b5894.
2019-10-09 03:31:30 +02:00
Jan Nieuwenhuizen 185152e39e
gnu: mcrl2: Update source url.
* gnu/packages/maths.scm (mcrl2): Update source url.
2019-10-08 23:25:51 +02:00
Pierre Langlois f875d76f16
gnu: python2-tqdm: Depend on python2-functools32.
* gnu/packages/python-xyz.scm (python-tqdm)[properties]: Add python2-variant.
(python2-tqdm): Use 'strip-python2-variant'.
[native-inputs]: Add python2-functools32.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-10-08 23:07:27 +02:00
Pierre Langlois d28c113f6b
gnu: gpodder: Update to 3.10.11.
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.11.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-10-08 23:07:09 +02:00
Pierre Langlois 9d282fb163
gnu: sakura: Update to 3.7.0.
* gnu/packages/terminals.scm (sakura): Update to 3.7.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-10-08 23:06:31 +02:00
Marius Bakke 4ed041d901
gnu: mate-applets: Build with a fixed version of yelp-tools.
Fixes <https://bugs.gnu.org/37668>.
Reported by Jan Wielkiewicz <tona_kosmicznego_smiecia@interia.pl>.

* gnu/packages/gnome.scm (yelp-tools/fixed): New public variable.
* gnu/packages/mate.scm (mate-applets)[native-inputs]: Replace YELP-TOOLS with
YELP-TOOLS/FIXED.
2019-10-08 22:04:12 +02:00
Marius Bakke 861907f01e
gnu: linux-libre@5.3: Apply upstream entropy fix.
See <https://bugs.gnu.org/37501>.

* gnu/packages/linux.scm (linux-libre-5.3-source): Add
"linux-libre-active-entropy.patch".
2019-10-08 13:14:16 +02:00
Ludovic Courtès cf3d1763ed
Merge branch 'core-updates' 2019-10-08 11:37:07 +02:00
Marius Bakke 2fa55c7247
gnu: mariadb: Build with GCC 5 on ARMv7.
Fixes <https://bugs.gnu.org/37605>.

* gnu/packages/databases.scm (mariadb)[native-inputs]: Add GCC-5 when the
current system is ARMv7.
2019-10-08 10:16:04 +02:00
Pierre Neidhardt d57660c549
gnu: Add serapeum.
* gnu/packages/lisp.scm (cl-serapeum, ecl-serapeum, sbcl-serapeum): New variables.
2019-10-08 10:06:07 +02:00
Christopher Baines a1c1943b7c
gnu: Add unknown-horizons.
* gnu/packages/games.scm (unknown-horizons): New variable.
2019-10-08 08:31:55 +01:00
Christopher Baines 2372a5f92e
gnu: Add fifengine.
* gnu/packcages/games.scm (fifengine): New variable.
2019-10-08 08:28:36 +01:00
Christopher Baines ce94fcfd6e
gnu: Add fifechan.
* gnu/packages/games.scm (fifechan): New variable.
2019-10-08 08:28:35 +01:00
Tobias Geerinckx-Rice d7a6a3f328
gnu: linux-libre@4.14: Update to 4.14.147.
* gnu/packages/linux.scm (deblob-scripts-4.14)
(linux-libre-4.14-version, linux-libre-4.14-pristine-source):
Update to 4.14.147.
2019-10-08 05:29:31 +02:00
Tobias Geerinckx-Rice a48f08bc81
gnu: linux-libre@4.9: Update to 4.9.195.
* gnu/packages/linux.scm (deblob-scripts-4.9)
(linux-libre-4.9-version, linux-libre-4.9-pristine-source):
Update to 4.9.195.
2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice ddefa2ff5c
gnu: linux-libre@4.19: Update to 4.19.77.
* gnu/packages/linux.scm (deblob-scripts-4.19)
(linux-libre-4.19-version, linux-libre-4.19-pristine-source):
Update to 4.19.77.
2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice c26b1d43fa
gnu: linux-libre@5.2: Update to 5.2.19.
* gnu/packages/linux.scm (deblob-scripts-5.2)
(linux-libre-5.2-version, linux-libre-5.2-pristine-source):
Update to 5.2.19.
2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice 24268ec418
gnu: coin3D: Use a specific changeset.
* gnu/packages/graphics.scm (coin3D)[source]: Use HG-FETCH and…
GIT-FILE-NAME.
2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice 9be266116b
gnu: me-cleaner: Update to 1.2.
* gnu/packages/flashing-tools.scm (me-cleaner): Update to 1.2.
[arguments]: Remove ‘create-setup.py’ phase.  Add ‘install-documentation’ phase.
2019-10-08 05:29:30 +02:00
Tobias Geerinckx-Rice 2608d3ea5b
gnu: perl-async-interrupt: Update to 1.25.
* gnu/packages/perl.scm (perl-async-interrupt): Update to 1.25.
2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 0be9038c95
gnu: maxflow: Use HTTPS home page.
* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice bdc63012d1
gnu: licensecheck: Update to 3.0.37.
* gnu/packages/license.scm (licensecheck): Update to 3.0.37.
2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice aa714a06db
gnu: perl-regexp-pattern-license: Update to 3.1.94.
* gnu/packages/license.scm (perl-regexp-pattern-license): Update to 3.1.94.
2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 1c8d6d6d7a
gnu: qucs-s: Update to 0.0.21.
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.21.
2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 0af12a1367
gnu: maxflow: Correct version to 3.0.5.
This won't be picked up by ‘guix package -u’, but the code is identical
anyway.  By changing this now, fewer installations will fail to upgrade
at all if upstream ever release a new <3.4.

* gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5.
[source]: Use version tag instead of raw matching commit.
2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 2dc0a6cf36
gnu: maxflow: Use GIT-FILE-NAME.
* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.
2019-10-08 05:29:28 +02:00
Tobias Geerinckx-Rice 248f218e44
gnu: lynis: Update to 2.7.5.
* gnu/packages/admin.scm (lynis): Update to 2.7.5.
2019-10-08 05:29:28 +02:00
Eric Bavier edaa616736
gnu: ncmpc: Fix manual install.
The default manual installation directory was fixed upstream in version 0.34.

* gnu/packages/mpd.scm (ncmpc)[arguments]: Remove #:configure-flags.
2019-10-07 19:51:08 -05:00
Arun Isaac 4cced9895e
gnu: emacs-linum-relative: Update to 0.6.
* gnu/packages/emacs-xyz.scm (emacs-linum-relative): Update to 0.6.
2019-10-07 21:19:41 +05:30
Ludovic Courtès 4d8d2fbaf3
Merge branch 'master' into core-updates 2019-10-07 17:06:13 +02:00
Ricardo Wurmus fa984fa678
gnu: jack-2: Update to 1.9.13.
* gnu/packages/audio.scm (jack-2): Update to 1.9.13.
[arguments]: Don't build with python-2.
[inputs]: Replace python2-dbus with python-dbus.
2019-10-07 16:37:01 +02:00
Pierre Neidhardt fa4bbd9f34
gnu: Add trivial-macroexpand-all.
* gnu/packages/lisp.scm (cl-trivial-macroexpand-all,
  ecl-trivial-macroexpand-all, sbcl-trivial-macroexpand-all): New variables.
2019-10-07 13:50:07 +02:00
Pierre Neidhardt c6dd9cf7ff
gnu: Add trivial-file-size.
* gnu/packages/lisp.scm (cl-trivial-file-size, ecl-trivial-file-size,
  sbcl-trivial-file-size): New variables.
2019-10-07 13:49:42 +02:00
Pierre Neidhardt 003a714e7e
gnu: Add global-vars.
* gnu/packages/lisp.scm (cl-global-vars, ecl-global-vars, sbcl-global-vars):
  New variables.
2019-10-07 13:49:28 +02:00
Pierre Neidhardt 3658db3fd7
gnu: Add string-case.
* gnu/packages/lisp.scm (cl-string-case, ecl-string-case, sbcl-string-case):
  New variables.
2019-10-07 13:48:23 +02:00
Pierre Neidhardt 6fdb5b7947
gnu: Add cl-fare-quasiquote-extras.
* gnu/packages/lisp.scm (cl-fare-quasiquote-extras): New variable.
2019-10-07 13:48:00 +02:00
Pierre Neidhardt 7b9cb9c01c
gnu: Add cl-fare-quasiquote-readtable.
* gnu/packages/lisp.scm (cl-fare-quasiquote-readtable): New variable.
2019-10-07 13:47:46 +02:00
Pierre Neidhardt 06e2da719e
gnu: Add fare-quasiquote-optima.
* gnu/packages/lisp.scm (cl-fare-quasiquote-optima,
  sbcl-fare-quasiquote-optima): New variables.
2019-10-07 13:46:55 +02:00
Pierre Neidhardt 7baaf7f358
gnu: Add cl-fare-quasiquote.
* gnu/packages/lisp.scm (cl-fare-quasiquote): New variable.
2019-10-07 13:46:36 +02:00
Pierre Neidhardt 85747bab82
gnu: sbcl-optima: Fix version number
* gnu/packages/lisp.scm (sbcl-optima)[version]: It's actually 1.0.
2019-10-07 13:45:53 +02:00
Vagrant Cascadian 7d82e92071
gnu: linux-libre: Update to 5.3.4.
* gnu/packages/linux (linux-libre-5.3-version): Update to 5.3.4.
  (deblob-scripts-5.3): Update to 5.3.4.
2019-10-07 01:55:46 -07:00
Ludovic Courtès 048d21a873
gnu: icedtea-7: Avoid massive rebuild.
Reported by Efraim Flashner.

* gnu/packages/java.scm (icedtea-7)[arguments]: Change 'lib-path'
definition in 'install-libjvm' to avoid the rebuilds that commit
1b6f99ea53 would otherwise entail.
2019-10-07 10:44:10 +02:00
Efraim Flashner 7b6a8e23b0
gnu: aria2: Update to 1.35.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.35.0.
[source]: Use new upstream uri. Remove patch.
* gnu/packages/patches/aria2-CVE-2019-3500.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-10-07 11:37:21 +03:00
Ludovic Courtès d3e22bcc11
gnu: icedtea-7: Support non-Intel systems.
This is a followup to 1b6f99ea53.

* gnu/packages/java.scm (icedtea-7)[arguments]: In 'install-libjvm'
phase, match armhf and aarch64.
[supported-systems]: New field.
2019-10-07 09:52:31 +02:00
Oleg Pykhalov 4261a9d162
gnu: emacs-mbsync: Update to 0.1.2-4.b62491c.
* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-4.b62491c.
2019-10-07 10:24:36 +03:00
Brian Leung 4f2a3fbe88
gnu: emacs-evil-nerd-commenter: Update to 3.3.8.
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8.
2019-10-07 08:20:50 +02:00
Brian Leung 3f68853557
gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e.
* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e.
2019-10-07 05:15:55 +02:00
Brian Leung 47467ce75a
gnu: Add emacs-peg.
* gnu/packages/emacs-xyz.scm (emacs-peg): New variable.
2019-10-07 04:34:59 +02:00
Brian Leung b44271350b
gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1.
* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1.
2019-10-07 01:43:37 +02:00
Ricardo Wurmus 326746e14c
gnu: r-variancepartition: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus eb796f53ef
gnu: r-mixomics: Update to 6.8.5.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 1c2e573302
gnu: r-regioner: Update to 1.16.5.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 07d0645b6b
gnu: r-backports: Update to 1.1.5.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus f817005bfe
gnu: r-gargle: Update to 0.4.0.
* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 9b112f4030
gnu: r-rcppparallel: Update to 4.4.4.
* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 770321180f
gnu: r-hdf5r: Update to 1.3.0.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 2e6ccd6c2d
gnu: r-promises: Update to 1.1.0.
* gnu/packages/cran.scm (r-promises): Update to 1.1.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus ab99236eba
gnu: r-later: Update to 1.0.0.
* gnu/packages/cran.scm (r-later): Update to 1.0.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus b7e7c320a2
gnu: r-maptools: Update to 0.9-8.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus ff74344597
gnu: r-htmlwidgets: Update to 1.5.
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 82acc94fbf
gnu: r-htmltools: Update to 0.4.0.
* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0.
[arguments]: Remove field.
[propagated-inputs]: Add r-rlang.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 33651044c6
gnu: r-seurat: Update to 3.1.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1.
[propagated-inputs]: Add r-httr.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 94638cbe77
gnu: r-rsamtools: Update to 2.0.2.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 122c1b3ce7
gnu: r-biomart: Update to 2.40.5.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.
2019-10-06 23:08:46 +02:00
Brian Leung d050fdf4c6
gnu: emacs-helm-ag: Fix version.
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.
2019-10-06 22:08:27 +02:00
Brian Leung cb2197508a
gnu: Add emacs-helm-org.
* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.
2019-10-06 22:08:27 +02:00
Brian Leung 45d04b2a7d
gnu: emacs-helm: Update to 3.5.0.
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.
2019-10-06 22:08:27 +02:00
Ricardo Wurmus 4722330d68
gnu: nss-pam-ldapd: Update to 0.9.11.
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11.
[inputs]: Replace python-2 with python.
2019-10-06 22:07:07 +02:00
Ricardo Wurmus e08902d3cb
Merge branch 'master' into core-updates 2019-10-06 22:02:20 +02:00
Ricardo Wurmus f58702465d
gnu: Add mloop.
* gnu/packages/music.scm (mloop): New variable.
2019-10-06 22:01:01 +02:00
Ricardo Wurmus 4b94e63db6
gnu: guile-studio: Update to 0-2.4d63f3d.
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d.
2019-10-06 22:01:01 +02:00
Ricardo Wurmus 1b6f99ea53
gnu: icedtea-7: Fix build on i686-linux.
* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when
the system is "i686-linux".
2019-10-06 22:01:01 +02:00
Ricardo Wurmus fc37b4afb2
gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM.
* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags:
--disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi.
[inputs]: Add libffi.
2019-10-06 22:01:01 +02:00
Brian Leung ff810d21a5
gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b.
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b.
2019-10-06 20:40:23 +02:00
Brian Leung 9049f28f57
gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee.
* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee.
2019-10-06 20:18:39 +02:00
Brian Leung 1017ba7dd5
gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86.
* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86.
2019-10-06 19:59:05 +02:00
Pierre Neidhardt cec23736d3
gnu: Add cl-goject-introspection.
* gnu/packages/lisp.scm (cl-goject-introspection,
  sbcl-cl-gobject-introspection): New variables.
2019-10-06 19:34:13 +02:00
Marius Bakke 1714edc3d4
gnu: WebKitGTK: Embed absolute file name of libWPEBackend-fdo-1.0.so.
Fixes <https://bugs.gnu.org/37545>.
Reported by Vagrant Cascadian <vagrant@debian.org>.

* gnu/packages/webkit.scm (webkitgtk)[arguments]: Add phase.
2019-10-06 18:02:48 +02:00
Marius Bakke c5ceec4150
gnu: linux-libre: Remove glibc from CPATH before the build.
Fixes <https://bugs.gnu.org/37593>.

* gnu/packages/linux.scm (make-linux-libre*)[arguments]: Drop "libc" from CPATH.
2019-10-06 18:02:48 +02:00
Marius Bakke dd69897113
gnu: linux-libre: Try to aggressively gather entropy during boot.
Fixes <https://bugs.gnu.org/37501>.

* gnu/packages/patches/linux-libre-active-entropy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-5.2-source): Use it.
2019-10-06 18:02:48 +02:00
Marius Bakke 5157edd885
gnu: perf: Treat kernel headers as system headers.
* gnu/packages/linux.scm (perf)[arguments]: Instead of disabling -Werror,
set C_INCLUDE_PATH.
2019-10-06 18:02:48 +02:00
Ludovic Courtès 63b0ce391f
services: shepherd: Compile service files.
This reduces resident memory for PID 1 from 29.8MiB to 28.7MiB right
after boot on a bare-bones system (x86_64-linux).

* gnu/services/shepherd.scm (scm->go): New procedure.
(shepherd-configuration-file)[config]: Call it and use 'load-compiled'
instead of 'primitive-load'.
2019-10-06 14:45:35 +02:00
Ludovic Courtès 38b1ea0434
services: udev: Explicitly depend on (gnu build linux-boot).
* gnu/services/base.scm (udev-shepherd-service): Wrap 'start' method in
'with-imported-modules'.
2019-10-06 14:45:35 +02:00
Ludovic Courtès 62c2217570
services: agetty: Explicitly depend on (gnu build linux-boot).
* gnu/services/base.scm (default-serial-port): Wrap in
'with-imported-modules'.
2019-10-06 14:45:35 +02:00
Ludovic Courtès 1994422752
system: Add 'mount' and 'umount' to '%setuid-programs'.
Fixes <https://bugs.gnu.org/37569>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

* gnu/system.scm (%setuid-programs): Add "mount" and "umount" from
util-linux.
2019-10-06 14:45:35 +02:00
Guillaume Le Vaillant 5a65fede0b
gnu: Add cl-random-forest.
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): New variables.
2019-10-06 14:37:54 +02:00
Guillaume Le Vaillant 7a15aab836
gnu: Add cl-online-learning.
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning,
  cl-online-learning, ecl-cl-online-learning): New variables.
2019-10-06 14:28:55 +02:00
Guillaume Le Vaillant 6e76087223
gnu: Add cl-libsvm-format.
* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
  ecl-cl-libsvm-format): New variables.
2019-10-06 14:28:55 +02:00
Guillaume Le Vaillant 2601da0523
gnu: Add cl-store.
* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New
  variables.
2019-10-06 14:28:51 +02:00
Guillaume Le Vaillant 7273b3b2a6
gnu: sbcl-hu.dwim.asdf: Update to 20190521.
* gnu/packages/lisp.scm (sbcl-hu.dwim.asdf): Update to 20190521.
  [uri]: Fetch more recent version from Quicklisp.
2019-10-06 14:19:03 +02:00
Guillaume Le Vaillant f65f713846
gnu: sbcl-alexandria: Update to 1.0.0.
* gnu/packages/lisp.scm (sbcl-alexandria): Update to 1.0.0.
  [native-inputs]: Add rt.
2019-10-06 14:19:03 +02:00
Guillaume Le Vaillant fd0f8860ec
gnu: ecl: Do not compile the deprecated MIT-RT.
Compiling the rt bundled with ECL prevents the ecl-rt package from compiling
properly, as ECL thinks it has already been compiled.

* gnu/packages/lisp.scm (ecl)[arguments]: Add '--without-rt' to
  'configure-flags'.
2019-10-06 14:19:03 +02:00
Guillaume Le Vaillant d3287fc157
gnu: Add chanl.
* gnu/packages/lisp.scm (sbcl-chanl, cl-chanl, ecl-chanl): New variables.
2019-10-06 14:19:03 +02:00
Efraim Flashner d24d980e8e
gnu: Remove rust-clippy.
This was added by accident in 14f3a7e373.

* gnu/packages/crates-io.scm (rust-clippy): Remove variable.
2019-10-06 14:38:02 +03:00
Timotej Lazar aa64198492
gnu: endless-sky: Update to 0.9.10.
* gnu/packages/games.scm (endless-sky): Update to 0.9.10.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06 11:58:02 +03:00
Giovanni Biscuolo e7f6d13722
gnu: zabbix: Update to 4.2.7.
* gnu/packages/monitoring.scm: (zabbix) Update to 4.2.7.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06 11:51:16 +03:00
tlecarrour@easter-eggs.com 1e8826bdd3
gnu: Update python-pastel to 0.1.1.
* gnu/packages/graphics.scm (python-pastel): Update to 0.1.1.
[arguments]: Add custom 'check phase.
[description]: Simplify description.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06 11:46:21 +03:00
Efraim Flashner 6792908d6d
gnu: waybar: Update to 0.8.0.
* gnu/packages/wm.scm (waybar): Update to 0.8.0.
2019-10-06 11:05:27 +03:00
Tobias Geerinckx-Rice 5a54baf67c
gnu: r-data-table: Update to 1.12.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.4.
[inputs]: Add zlib.
2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice 011ec062f3
gnu: python-mnemonic: Update to 0.19.
* gnu/packages/finance.scm (python-mnemonic): Update to 0.19.
2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice ef10cbb41f
gnu: r-gamlss-dist: Update to 5.1-5.
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-5.
2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice ac5e205a3c
gnu: python-traitlets: Update to 4.3.3.
* gnu/packages/python-xyz.scm (python-traitlets): Update to 4.3.3.
2019-10-06 04:46:54 +02:00
Tobias Geerinckx-Rice 44805ca503
gnu: r-pegas: Update to 0.12.
* gnu/packages/cran.scm (r-pegas): Update to 0.12.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice 12a66af6b0
gnu: rust-miniz-oxide: Update to 0.3.3.
* gnu/packages/crates-io.scm (rust-miniz-oxide): Update to 0.3.3.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice 79e3e6a5c0
gnu: rust-openssl-sys: Update to 0.9.50.
* gnu/packages/crates-io.scm (rust-openssl-sys): Update to 0.9.50.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice 11820827d0
gnu: r-polspline: Update to 1.1.16.
* gnu/packages/cran.scm (r-polspline): Update to 1.1.16.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice d71bbfea54
gnu: perl-test-tcp: Update to 2.21.
* gnu/packages/web.scm (perl-test-tcp): Update to 2.21.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice 5d7e1c807d
gnu: perl-test-mockobject: Update to 1.20191002.
* gnu/packages/perl-check.scm (perl-test-mockobject): Update to 1.20191002.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice 5327fbb391
gnu: lua-luv: Update to 1.30.1-1.
* gnu/packages/lua.scm (lua-luv): Update to 1.30.1-1.
2019-10-06 04:46:53 +02:00
Tobias Geerinckx-Rice 3acd85ac30
gnu: lua-libmpack: Update to 1.0.8.
* gnu/packages/serialization.scm (lua-libmpack): Update to 1.0.8.
2019-10-06 04:46:52 +02:00
Tobias Geerinckx-Rice d1b0e1fd6d
gnu: perl-html-form: Update to 6.05.
* gnu/packages/web.scm (perl-html-form): Update to 6.05.
2019-10-06 04:46:52 +02:00
Tobias Geerinckx-Rice 1e9b956e41
gnu: quaternion: Update to 0.0.9.4c.
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.4c.
2019-10-06 04:46:52 +02:00
Tobias Geerinckx-Rice 0395c53359
gnu: libqmatrixclient: Update to 0.5.2.
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.5.2.
2019-10-06 04:46:52 +02:00