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Author SHA1 Message Date
Artyom V. Poptsov 3012dad9eb
gnu: guile-ssh: Update to 0.16.2. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.2.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 16:08:50 +01:00
Nicolas Goaziou 6482525dca
gnu: ode: Do not run tests on i686. 
* gnu/packages/game-development.scm (ode)[arguments]: Do not run tests on i686.
 2023-01-08 15:17:59 +01:00
Nicolas Goaziou 6e55c1732c
gnu: rosegarden: Run tests. 
* gnu/packages/music.scm (rosegarden)[arguments]<#:phases>: Actually run
tests.  Also fix or skip failing tests.
 2023-01-08 15:17:59 +01:00
Nicolas Goaziou bf707d29e5
gnu: rosegarden: Update to 22.12.1. 
* gnu/packages/music.scm (rosegarden): Update to 22.12.1.
 2023-01-08 15:17:58 +01:00
Mathieu Othacehe c7fbdb7c9d
gnu: guile-email-latest: Fix build. 
* gnu/packages/guile-xyz.scm (guile-email-latest)[arguments]: Restore the
default.
 2023-01-08 13:21:52 +01:00
Nicolas Goaziou 425af6d74f
gnu: lyx: Activate spellchecking. 
* gnu/packages/tex.scm (lyx)[inputs]: Use ASPELL instead of HUNSPELL since the
latter is not detected during configure phase.
 2023-01-08 12:20:51 +01:00
Nicolas Goaziou 6ad0fa893d
gnu: lyx: Improve package style. 
* gnu/packages/tex.scm (lyx)[source]<snippet>: Remove trailing #T.
[arguments]<#phases>: Use SEARCH-INPUT-FILE.
[propagated-inputs]: Remove input label.
 2023-01-08 12:20:51 +01:00
Nicolas Goaziou e09f3cf9b9
gnu: lyx: Update to 2.3.7. 
* gnu/packages/tex.scm (lyx): Update to 2.3.7.
 2023-01-08 12:20:50 +01:00
Nicolas Goaziou a1e33b7d8f
gnu: scintilla: Update to 5.3.2. 
* gnu/packages/text-editors.scm (scintilla): Update to 5.3.2.
 2023-01-08 12:20:50 +01:00
Nicolas Goaziou 3af18d785d
gnu: ode: Improve package style. 
* gnu/packages/game-development.scm (ode)[source]<snippet>: Remove trailing
[arguments]: Use G-expressions.  Remove trailing #T from phase.
 2023-01-08 12:20:50 +01:00
Nicolas Goaziou 99d3cfe68a
gnu: ode: Update to 0.16.3. 
* gnu/packages/game-development.scm (ode): Update to 0.16.3.
 2023-01-08 12:20:49 +01:00
Feng Shu db6899068f
gnu: emacs-magit: Update to 3.3.0-1.b908c79. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.0-1.b908c79.

This update is needed for compatibility with Compat 2.9.1.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-08 12:20:49 +01:00
Feng Shu b59a42918a
gnu: emacs-compat: Update to 29.1.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.1.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-08 12:20:49 +01:00
Mathieu Othacehe eddfa6f4c2
gnu: guix: Update to 1.4.0-1.9fe5b49. 
* gnu/packages/package-management.scm (guix): Update to 1.4.0-1.9fe5b49.
 2023-01-08 12:17:46 +01:00
jgart 1a706051ec
gnu: Add tilix. 
* gnu/packages/terminals.scm (tilix): New variable.

Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
 2023-01-08 13:06:17 +02:00
Efraim Flashner 9fe5b490df
gnu: tracker: Extend test timeout for riscv64-linux. 
* gnu/packages/gnome.scm (tracker)[arguments]: Adjust test-options when
building for riscv64-linux to add a timeout multiplier.
 2023-01-08 11:53:01 +02:00
Efraim Flashner 5ee51394d7
gnu: tracker: Honor #:test-options keyword. 
* gnu/packages/gnome.scm (tracker)[arguments]: Adjust custom 'check
phase to honor the #:test-options keyword.
 2023-01-08 11:53:00 +02:00
Efraim Flashner ca8fcca456
gnu: webkitgtk-next: Update to 2.38.3. 
* gnu/packages/webkit.scm (webkitgtk-next): Update to 2.38.3.
 2023-01-08 11:52:57 +02:00
Liliana Marie Prikler 5b2d100a51
gnu: Add d-spy. 
* gnu/packages/gnome.scm (d-spy): New variable.
 2023-01-08 08:58:40 +01:00
Liliana Marie Prikler f778d8cece
gnu: komikku: Update to 1.7.0. 
* gnu/packages/gnome.scm (komikku): Update to 1.7.0.
 2023-01-08 08:58:40 +01:00
Maxim Cournoyer 17a672524e
gnu: castget: Update to 2.0.0-0.da9727d. 
* gnu/packages/gpodder.scm (castget): Update to 2.0.0-0.da9727d.
[inputs]: Replace id3lib with taglib.
 2023-01-08 00:41:07 -05:00
Maxim Cournoyer b0f92620d8
gnu: ruby-sanitize: Update to 6.0.0. 
* gnu/packages/ruby.scm (ruby-sanitize): Update to 6.0.0.  Re-indent inputs.
[source]: Delete patch.
* gnu/packages/patches/ruby-sanitize-system-libxml.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): De-register it.
 2023-01-08 00:41:07 -05:00
Maxim Cournoyer d163a379b9
gnu: ruby-html-proofer: Update to 5.0.3. 
* gnu/packages/ruby.scm (ruby-html-proofer): Update to 5.0.3.
[arguments]: Add replace-git-ls-files and relax-requirements phases.
[native-inputs]: Delete field.
[propagated-inputs]: Replace ruby-nokogumbo with ruby-nokogiri.
 2023-01-08 00:41:06 -05:00
Maxim Cournoyer 8c002eefdf
gnu: ruby-nokogumbo: Deprecate in favor of ruby-nokogiri. 
* gnu/packages/ruby.scm (ruby-nokogumbo): Define as a deprecated alias to
ruby-nokogiri.
 2023-01-08 00:41:06 -05:00
Maxim Cournoyer cc79e4b539
gnu: ruby-nokogiri: Make it reproducible. 
Fixes <https://issues.guix.gnu.org/56389>.

* gnu/packages/ruby.scm (ruby-nokogiri) [arguments]: Use gexps.
[phases] {delete-mkmf.log}: New phase.

Reported-by: Wiktor Żelazny <wzelazny@vurv.cz>
 2023-01-08 00:41:06 -05:00
Maxim Cournoyer fcbe54c27a
gnu: ruby-nokogiri: Update to 1.13.10. 
* gnu/packages/ruby.scm (ruby-mini-portile-2): Update to 1.13.10.
(ruby-mini-portile-2.6.1): Delete variable.
(ruby-nokogiri): Re-indent inputs.
[propagated-inputs]: Replace ruby-mini-portile-2.6.1 with
ruby-mini-portile-2.
 2023-01-08 00:41:06 -05:00
Maxim Cournoyer 6226120649
gnu: ruby-ruby-prof: Update to 1.4.5. 
* gnu/packages/ruby.scm (ruby-ruby-prof): Update to 1.4.5.
[arguments]: Reword comment as FIXME.  Remove trailing #t.
Delete obsolete substitution in patch-rakefile phase.
Re-format native-inputs on a single line.
 2023-01-08 00:41:05 -05:00
Maxim Cournoyer f7c803f998
gnu: ruby-prawn-svg: Update to 0.32.0. 
* gnu/packages/ruby.scm (ruby-prawn-svg): Update to 0.32.0.
Delete trailing #t and re-indent inputs.
 2023-01-08 00:41:05 -05:00
Maxim Cournoyer 7529d2b9c1
gnu: ruby-prawn-icon: Update to 3.1.0. 
* gnu/packages/ruby.scm (ruby-prawn-icon): Update to 3.1.0.
Delete trailing #t.
 2023-01-08 00:41:05 -05:00
Maxim Cournoyer 6d83856422
gnu: ruby-asciidoctor-pdf: Update to 2.3.4. 
* gnu/packages/ruby.scm (ruby-asciidoctor-pdf): Update to 2.3.4.
[arguments]: Use gexps.  Streamline check phase.  Delete remove-failing-tests
phase.
[native-inputs]: Break on multiple lines.
[propagated-inputs]: Remove labels.
 2023-01-08 00:41:05 -05:00
Maxim Cournoyer a0b73c4be5
gnu: ruby-prawn: Update to 2.4.0. 
* gnu/packages/ruby.scm (ruby-prawn): Update to 2.4.0.
[arguments]: Delete trailing #t and use gexps.
[propagated-inputs]: Add ruby-matrix.
[native-inputs]: Remove ruby-rspec, ruby-simplecov and ruby-yard.  Add
ruby-prawn-dev.
 2023-01-08 00:41:05 -05:00
Maxim Cournoyer 0080da6f4c
gnu: ruby-pdf-core: Update to 0.9.0. 
* gnu/packages/ruby.scm (ruby-pdf-core): Update to 0.9.0.
 2023-01-08 00:41:04 -05:00
Maxim Cournoyer 2dd677d0fc
gnu: Add ruby-matrix. 
* gnu/packages/ruby.scm (ruby-matrix): New variable.
 2023-01-08 00:41:04 -05:00
Maxim Cournoyer c16e11bb2f
gnu: ruby-ttfunk: Update to 1.7.0. 
* gnu/packages/ruby.scm (ruby-ttfunk): Update to 1.7.0.
[source]: Fix indentation.  Use complete sentences for comments.
[arguments]: Use gexps.  Add comment next to #:test-target.  Delete
remove-rubocop and remove-ssh phases.  Add remove-missing-key-directive phase.
[native-inputs]: Remove ruby-rspec, ruby-yard and bundler.  Add
ruby-prawn-dev.
 2023-01-08 00:41:04 -05:00
Maxim Cournoyer ad6350ab8b
gnu: Add ruby-prawn-dev. 
* gnu/packages/ruby.scm (ruby-prawn-dev): New variable.
 2023-01-08 00:41:04 -05:00
Maxim Cournoyer a2fb87fd0c
gnu: ruby-open-uri-cached: Update to 1.0.0. 
* gnu/packages/ruby.scm (ruby-open-uri-cached): Update to 1.0.0.
 2023-01-08 00:41:04 -05:00
Maxim Cournoyer 2cfa58e38c
gnu: ruby-asciidoctor-multipage: Update to 0.0.16. 
* gnu/packages/ruby.scm (ruby-asciidoctor-multipage): Update to 0.0.16.
[phases]: Delete trailing #t and use \n instead of an actual newline.
 2023-01-08 00:41:03 -05:00
Leo Famulari db3fdbbdfe
gnu: linux-libre 4.9: Update to 4.9.337. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.337.
(linux-libre-4.9-pristine-source): Update hash.
 2023-01-07 21:51:15 -05:00
Leo Famulari 2ea286e90f
gnu: linux-libre: Update to 6.0.18. 
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.18.
(linux-libre-6.0-pristine-source): Update hash.
 2023-01-07 21:51:15 -05:00
Leo Famulari 5edf3e9844
gnu: linux-libre 6.1: Update to 6.1.4. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.4.
(linux-libre-6.1-pristine-source): Update hash.
 2023-01-07 21:51:11 -05:00
Efraim Flashner 6fc12877e1
gnu: gtkd: Fix pkgconfig directory. 
* gnu/packages/dlang.scm (gtkd)[arguments]: Add make-flag to set the
pkgconfig directory correctly.
 2023-01-07 23:06:54 +02:00
Marius Bakke d15972194a
gnu: ipxe: Enable syslinux only on i686-linux and x86_64-linux. 
* gnu/packages/bootloaders.scm (ipxe)[native-inputs]: Conditionally add
SYSLINUX.
[arguments]: Adjust accordingly.
 2023-01-07 21:04:27 +01:00
Marius Bakke b435f631a6
gnu: ipxe: Use G-expression. 
* gnu/packages/bootloaders.scm (ipxe)[arguments]: Convert to G-expression.
While at it, remove trailing #t's and label usage.
 2023-01-07 21:04:27 +01:00
Marius Bakke 998c8db2a5
gnu: python-funcy: Use pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-funcy)[build-system]: Change to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove.
 2023-01-07 21:04:27 +01:00
Marius Bakke 73b765d64b
gnu: python-whatever: Use pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-whatever)[build-system]: Change to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove.
 2023-01-07 21:04:27 +01:00
Marius Bakke 09091b841b
gnu: python-gyp: Update to 0.0.0-1.9d09418. 
* gnu/packages/python-xyz.scm (python-gyp): Update to 0.0.0-1.9d09418.
 2023-01-07 21:04:27 +01:00
Marius Bakke ed59b32a40
gnu: python-pytidylib: Fix failing test. 
* gnu/packages/python-xyz.scm (python-pytidylib)[arguments]: Add phase.
 2023-01-07 21:04:27 +01:00
Marius Bakke a6c005dbac
gnu: Remove python-pyev. 
This package fails to build, is no longer on PyPI, and has been inactive
upstream for 10 years.

* gnu/packages/python-xyz.scm (python-pyev): Remove variable.
 2023-01-07 21:04:27 +01:00
Marius Bakke aa861a3980
gnu: python-capstone: Fix tests. 
* gnu/packages/engineering.scm (python-capstone)[arguments]: Override check
phase.  While here, remove label usage in chdir-and-fix-setup-py phase.
 2023-01-07 21:04:27 +01:00
Marius Bakke b9a886bbb3
gnu: Remove python-trollius-redis. 
This package fails to build and has been inactive upstream for 8 years.

* gnu/packages/databases.scm (python-trollius-redis): Remove variable.
 2023-01-07 21:04:27 +01:00
Marius Bakke 3a835f7dd4
gnu: python-openid-teams: Add missing inputs. 
* gnu/packages/python-web.scm (python-openid-teams)[propagated-inputs]: Add
PYTHON-OPENID and PYTHON-SIX.
 2023-01-07 21:04:27 +01:00
Marius Bakke da0a5d483f
gnu: python-openid-cla: Add missing inputs. 
* gnu/packages/python-web.scm (python-openid-cla)[propagated-inputs]: Add
PYTHON-OPENID and PYTHON-SIX.
 2023-01-07 21:04:27 +01:00
Marius Bakke edbacab995
gnu: Use old setuptools in packages that relies on use_2to3 conversion. 
This fixes a regression since 520cdf8058 where
the use_2to3 functionality was removed from setuptools.

* gnu/packages/graph.scm (python-louvain)[native-inputs]: Change from
PYTHON-SETUPTOOLS to PYTHON-SETUPTOOLS-57.
* gnu/packages/python-check.scm (python-parameterizedtestcase)[native-inputs]:
Likewise.
* gnu/packages/python-xyz.scm (python-anyjson)[native-inputs]: Add
PYTHON-SETUPTOOLS-57.
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Change from
PYTHON-SETUPTOOLS-FOR-TENSORFLOW to PYTHON-SETUPTOOLS-57.
 2023-01-07 21:04:26 +01:00
Marius Bakke a47c475678
gnu: python-setuptools: Add 57.5.0. 
* gnu/packages/python-build.scm (python-setuptools-57): New variable.
 2023-01-07 21:04:26 +01:00
Leo Famulari 7f96726607
gnu: linux-libre 5.10: Update to 5.10.162. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.162.
(linux-libre-5.10-pristine-source): Update hash.
 2023-01-07 14:15:26 -05:00
Leo Famulari 2a7e878253
gnu: linux-libre 6.0: Update to 6.0.17. 
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.17.
(linux-libre-6.0-pristine-source): Update hash.
 2023-01-07 14:15:25 -05:00
Leo Famulari ea64560daf
gnu: linux-libre 6.1: Update to 6.1.3. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.3.
(linux-libre-6.1-pristine-source): Update hash.
 2023-01-07 14:15:25 -05:00
Mathieu Othacehe 699d104146
Revert "services: base: Add extra-env support to guix-configuration." 
This reverts commit 78a9b4f996. It was pushed by
error, while not reviewed yet.
 2023-01-07 20:14:24 +01:00
Olivier Dion 1b7e3196e4
gnu: lttng-tools: Update to 2.13.9. 
* gnu/packages/instrumentation.scm (lttng-tools): Update to 2.13.9.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 20:09:33 +01:00
Nikolay Korotkiy c646ec0586
gnu: tippecanoe: Update to 2.17.0. 
* gnu/packages/geo.scm (tippecanoe): Update to 2.17.0.
[source]: Update the url to a maintained repository.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 20:08:55 +01:00
Matthew James Kraai ab1f4dbf83
gnu: doctl: Update to 1.92.0. 
* gnu/packages/admin.scm (doctl): Update to 1.92.0.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 20:02:42 +01:00
Michael Rohleder 6232e7a067
gnu: strawberry: Update to 1.0.12. 
* gnu/packages/music.scm (strawberry): Update to 1.0.12.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 19:55:59 +01:00
Michael Rohleder 72c9247491
gnu: strawberry: Use qt6 instead of qt5. 
* gnu/packages/music.scm (strawberry)[inputs]: Remove qtbase-5. Add qtbase.
[native-inputs]: Remove qttools-5. Add qttools.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 19:54:46 +01:00
Nikolay Korotkiy 46036dd486
gnu: sfeed: Update to 1.6. 
* gnu/packages/suckless.scm (sfeed): Update to 1.6.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 19:53:17 +01:00
Nikolay Korotkiy 578fa02bba
gnu: slock: Update to 1.5. 
* gnu/packages/suckless.scm (slock): Update to 1.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 19:52:21 +01:00
Artyom V. Poptsov 18cb8522d8
gnu: guile-udev: Update to 0.2.4. 
* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.4.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-07 19:51:15 +01:00
Mathieu Othacehe 78a9b4f996
services: base: Add extra-env support to guix-configuration. 
* gnu/services/base.scm (<guix-configuration>)[extra-env]: New field.
(guix-shepherd-service): Honor it.
* doc/guix.texi (Base Services): Document it.
 2023-01-07 19:41:51 +01:00
Nicolas Goaziou db746d1660
gnu: Remove emacs-nadvice as a propagated input. 
* gnu/packages/emacs-xyz.scm (emacs-compat)[propagated-inputs]: Remove
EMACS-NADVICE.
* gnu/packages/emacs-xyz.scm (emacs-excorporate)[propagated-inputs]: Remove
EMACS-NADVICE.

Emacs Nadvice provides a compatibility layer for Emacs < 24.4.  Nowadays, Guix
provides at leas Emacs 28.  This package is not useful.  Worse, it can
introduce issues with autoloads, as reported in
<https://issues.guix.gnu.org/60627>.
 2023-01-07 16:00:07 +01:00
Nicolas Goaziou 7e656bfa28
gnu: emacs-org-ql: Update to 0.6.3-0.2953352. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.6.3-0.2953352.
[arguments]: Fix a test.
[native-inputs]: Move after arguments field.
[propagated-inputs]: Re-order alphabetically. Move after arguments field.
 2023-01-07 15:56:16 +01:00
Nicolas Goaziou 7c01abeb6e
gnu: emacs-citre: Improve synopsis and description. 
* gnu/packages/emacs-xyz.scm (emacs-citre)[synopsis]: Clarify meaning.
[description]: Fix typo.
 2023-01-07 12:37:25 +01:00
Feng Shu d9a45d2cc8
gnu: emacs-citre: Search proper ctags program. 
* gnu/packages/emacs-xyz.scm (emacs-citre)[arguments]<#:phases>: Do not use
search-input-file to search ctags, for it will get ctags of emacs-minimal
instead of universal-ctags.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-07 11:47:42 +01:00
Feng Shu d16edd03cf
gnu: emacs-company-posframe: Update to 0.7.0. 
* gnu/packages/emacs-xyz.scm (emacs-company-posframe): Update to 0.7.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-07 00:50:02 +01:00
Feng Shu 605a14a176
gnu: Add emacs-citre. 
* gnu/packages/emacs-xyz.scm (emacs-citre): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-07 00:50:00 +01:00
Feng Shu 11d9077be1
gnu: Add emacs-ebdb-i18n-chn. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb-i18n-chn): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-07 00:49:58 +01:00
Feng Shu 5527368bcc
gnu: Add emacs-cal-china-x. 
* gnu/packages/emacs-xyz.scm (emacs-cal-china-x): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-07 00:49:56 +01:00
Feng Shu 78a29b0f85
gnu: emacs-pyim-basedict: Install pyim-basedict.pyim file. 
* gnu/packages/emacs-xyz.scm (emacs-pyim-basedict) [arguments]<#:include>:
Install "pyim-basedict.pyim" file.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-01-07 00:49:54 +01:00
Nicolas Goaziou bd7450d0ba
gnu: emacs-inspector: Update to 0.10. 
* gnu/packages/emacs-xyz.scm (emacs-inspector): Update to 0.10.
 2023-01-07 00:49:52 +01:00
Nicolas Goaziou f283f58f3c
gnu: emacs-consult: Update to 0.31. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.31.
 2023-01-07 00:49:50 +01:00
Nicolas Goaziou b334184d1c
gnu: emacs-compat: Update to 29.1.0.1. 
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.0.1.
 2023-01-07 00:49:48 +01:00
Nicolas Goaziou 5b057c1983
gnu: emacs-benchmark-init: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-benchmark-init): Update to 1.1.
 2023-01-07 00:49:39 +01:00
Sharlatan Hellseher cce9ff2d5a
gnu: indi: Update to 1.9.9. 
* gnu/packages/astronomy.scm (indi): Update to 1.9.9.
  [arguments]{tests}: Silent test on aarch64-linux system.
  [inputs]: Add libev.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:32 +01:00
Sharlatan Hellseher 109cb41780
gnu: python-astropy: Update to 5.1.1. 
* gnu/packages/astronomy.scm (python-astropy): Update to 5.1.1.
  [source]{snippet}: Unbundle wcslib.
  [arguments]{phases}: preparations: Use all system libraries.
  [inputs]: Add wcslib.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:32 +01:00
Sharlatan Hellseher d86ac0008f
gnu: wcslib: Update to 7.12. 
* gnu/packages/astronomy.scm (wcslib): Update to 7.12.
  [arguments]: Use Gexp, enable parallel tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Sharlatan Hellseher 888942a155
gnu: python-fitsio: Update to 1.1.8. 
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.1.8.
  [arguments]{phases}: skip-bzip2-test remove redundant phase as cfitsio
  built with bzip2 support.
  [inputs]: Add curl-minimal.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Sharlatan Hellseher 5534a69223
gnu: cfitsio: Build with bzip2 support. 
* gnu/packages/astronomy.scm (cfitsio):
  [arguments](configure-flags): Add bzip2 option.
  [inputs]: Add bzip2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Sharlatan Hellseher 96df67e068
gnu: cfitsio: Update to 4.2.0. 
Fix build on aarch64-linux as reported in:
- https://issues.guix.gnu.org/59323
- https://github.com/rwesson/ALFA/issues/29

The latest version passed build on aarch64-linux system with curl and
gfortran enabled. wcslib@7.5 passed build with curl enabled (was marked
as failing in cements).

* gnu/packages/astronomy.scm (cfitsio): Update to 4.2.0.
  [arguments]: Use Gexp, enable tests.
  [arguments](phases): Delete check and add post-install-check phases.
  [native-inputs]: Add gfortran.
  [inputs]: Add curl, zlib.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Arun Isaac 38086021b8
gnu: guile-email: Update to 0.3.0. 
* gnu/packages/guile-xyz.scm (guile-email): Update to 0.3.0.
[native-inputs]: Remove pkg-config and lzip. Add texinfo.
[arguments]: Remove GUILE_AUTO_COMPILE=0 make-flag. Add prefix
make-flag. Delete configure phase.
(guile2.2-email)[arguments]: Add guile_effective_version=2.2 make-flag.
* gnu/packages/patches/guile-email-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
 2023-01-06 19:57:25 +00:00
David Thompson 22ffa5e00a
gnu: Update guile-syntax-highlight to 0.2.0. 
* gnu/packages/guile-xyz.scm (guile-syntax-highlight): Update to 0.2.0.
 2023-01-06 10:39:19 -05:00
Ricardo Wurmus 1dd8359fa2
gnu: bbmap: Update to 39.01. 
* gnu/packages/bioinformatics.scm (bbmap): Update to 39.01.
 2023-01-06 15:12:07 +01:00
Ricardo Wurmus f72dc615ab
gnu: bbmap: Use gexp. 
* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Use gexp.
 2023-01-06 15:11:48 +01:00
Ricardo Wurmus 04ea0e7de4
gnu: nanopolish: Drop input labels. 
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Drop labels.
 2023-01-06 15:01:05 +01:00
Ricardo Wurmus 24e5dbb57a
gnu: nanopolish: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (nanopolish): Update to 0.14.0.
[source]: Update snippet.
[arguments]: Use gexp; use cc-for-target; drop #T from build phases.
[inputs]: Add minimap2.
[native-inputs]: Add cmake-minimal.
 2023-01-06 14:51:55 +01:00
Ricardo Wurmus 8ace894681
gnu: filtlong: Use Python 3. 
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Replace python-2 with
python-wrapper.
 2023-01-06 14:06:13 +01:00
Ricardo Wurmus 067c8a7445
gnu: filtlong: Use gexp. 
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Use gexp.
 2023-01-06 14:05:58 +01:00
Ricardo Wurmus 0070e52ade
gnu: filtlong: Drop input labels. 
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Drop labels.
 2023-01-06 13:59:04 +01:00
Ricardo Wurmus f5ffcd31c2
gnu: filtlong: Remove trailing #T from build phases. 
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Remove trailing #T.
 2023-01-06 13:58:05 +01:00
Ricardo Wurmus e20ca244db
gnu: ngless: Use gexp. 
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Use gexp.
 2023-01-06 13:56:34 +01:00
Ricardo Wurmus 648c370f33
gnu: ngless: Remove trailing #T from build phases. 
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Remove trailing #T.
 2023-01-06 13:45:06 +01:00
Ricardo Wurmus ba35d6ba12
gnu: Add guile-newra. 
* gnu/packages/guile-xyz.scm (guile-newra): New variable.
 2023-01-06 13:13:32 +01:00
Ricardo Wurmus a768b0433e
gnu: Add psascan. 
* gnu/packages/cpp.scm (psascan): New variable.
 2023-01-06 12:28:15 +01:00