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136321 Commits (b433ac8d64471938303822f78410c882556db6bc)

Author SHA1 Message Date
Ricardo Wurmus 4290e9c021
gnu: r-wrench: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.22.0.

Change-Id: Ic5b0bc0ca63f073b121041bb3779cd6440dadf22
2024-05-08 12:53:33 +02:00
Ricardo Wurmus ee4ba2b6d7
gnu: r-wppi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.12.0.

Change-Id: Ifb378d20553d74bfca3a3311e1139f8bccc79a8b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 649def40b8
gnu: r-xcms: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.0.
[propagated-inputs]: Remove r-multtest, r-plyr, r-rann, and r-robustbase; add r-jsonlite
and r-metabocoreutils.

Change-Id: I8ebcedc2c4b7fc073589c474de8a3ea52071d278
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 218d7093e5
gnu: r-massspecwavelet: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.70.0.

Change-Id: I0c19c85365065a5918c9236b8789798edbd69431
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3d31071378
gnu: r-roar: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.40.0.

Change-Id: I86b612f9a1d4715d22a30fd6dc3c564f53400bdb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus bf13473e7f
gnu: r-yarn: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.30.0.

Change-Id: Ibc82dc44f5f1b61b5adefaee2a16de1e159ff865
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e873fea1c1
gnu: r-quantro: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.38.0.

Change-Id: Ib9b1c373c0f7820c1944d49e6cdc9e0da30c752c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 67584d7d08
gnu: r-gcrma: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.76.0.

Change-Id: I224f243340bed970d72a8186d1f286d6e87a339b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus f6f96b1e5d
gnu: r-yapsa: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.30.0.

Change-Id: Iaf62b6d599e1a7e3cd3255877a9faf9c3d8b28c1
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78ca6efb7d
gnu: r-somaticsignatures: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.40.0.

Change-Id: I599c3b6a521a93dfa056d3ea42a27906360f4e92
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3458fcb7e0
gnu: r-gtrellis: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.36.0.

Change-Id: I3d0e77d8406b71adfcce754c0df5d82fbfa54d29
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e03461e6ab
gnu: r-yamss: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.30.0.

Change-Id: Id552217ad9a7a8273e38face0f016c410b6d2f25
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 1815859a6b
gnu: r-ebimage: Update to 4.46.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.46.0.

Change-Id: I18b62127bbd91d4c443a29a376506ffb95bdf74f
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 5b0edd7546
gnu: r-aucell: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.26.0.
[propagated-inputs]: Remove r-shiny.

Change-Id: I258ef1c0dbe0b3039cccc52b45bcd279e13448eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78668dc53f
gnu: r-allelicimbalance: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.42.0.

Change-Id: I2317a273e56cec77dfc2904a9f4b394954b4452c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 69baa29212
gnu: r-annotationtools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.78.0.

Change-Id: I03cfc05951d2385d129299857ab33dca14b9a09c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus af398adbe3
gnu: r-gofuncr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.24.0.

Change-Id: I3a9519ce281638bded1674efdcedee2792653edd
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f5d18100fe
gnu: r-atacseqqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.28.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: Ie8b4dfaeb8d2dace4222edcc453206c92038ccf3
2024-05-08 12:53:32 +02:00
Ricardo Wurmus c05269694a
gnu: r-genomicscores: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.16.0.

Change-Id: I5e16fcbdb0539d1549703c5613637a45dd394f19
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00
Ricardo Wurmus b367f31127
gnu: r-motifdb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.46.0.

Change-Id: I59ea594a6f60475130842a9f1184fc2347610ca4
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f51df09015
gnu: r-rgadem: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.52.0.

Change-Id: Icb79e5feac3f3d62236ddc2a11b69cdcd41e2adb
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 6681ecd758
gnu: r-bacon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.32.0.

Change-Id: I7205d0816ada2cd36892f8c60bc51745d8bb5b3c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 4bff48490a
gnu: r-abseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.22.0.

Change-Id: I0dccf1f24b03770773e7c4bf46a290091ecf4639
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 31a2196712
gnu: r-a4: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.52.0.

Change-Id: I9d5e462c3a85085e3d4e6a6e029facb15ecc75a8
2024-05-08 12:53:32 +02:00
Ricardo Wurmus e99c0cb450
gnu: r-a4base: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.52.0.

Change-Id: Ib453338c9f5120152401b63316875563dcfa8a6f
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 316a754148
gnu: r-a4reporting: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.52.0.

Change-Id: Ibbf221deb0fe3a25832e028d4428daca86638aae
2024-05-08 12:53:32 +02:00
Ricardo Wurmus fe2386ed67
gnu: r-a4preproc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.52.0.

Change-Id: If57e045b95a93fc6f3219563c14cb75d8b7def09
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f76b77319c
gnu: r-a4classif: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.52.0.

Change-Id: I80ac898550980c35b035fdb1d9830107eef81fbe
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 2de96b1cac
gnu: r-a4core: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.52.0.

Change-Id: Ic773aab10e8d25897b3d656ef97302ccc6c4e585
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 42069fa4f3
gnu: r-annaffy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.76.0.

Change-Id: Id4e02486fc59d4a1522d2a5ad4bdcb952656bb35
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 863e4f3fad
gnu: r-mlinterfaces: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.84.0.

Change-Id: I92ed0cc7b971ac04eac715d47031ce2dcee1fd65
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 38a5a2ee34
gnu: r-clusterexperiment: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.24.0.
[propagated-inputs]: Remove r-howmany.

Change-Id: Ibd0ea9c9ea87c3eddc86b6d7e13198575cc10418
2024-05-08 12:53:32 +02:00
Ricardo Wurmus d4eec5ad55
gnu: r-clusterprofiler: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.0.

Change-Id: If7fcff996d1c7341bb9e9faa0499dd259e894afc
2024-05-08 12:53:32 +02:00
Ricardo Wurmus de0f76d329
gnu: r-enrichplot: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.24.0.

Change-Id: Ide2c42c7df2f76742242df9191b51e56b4bcfc20
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a1f70d410a
gnu: r-enrichedheatmap: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.34.0.

Change-Id: I08fa610c96dd70460daf90f1a55adfe14119c12a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0806704ab3
gnu: r-dose: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.0.

Change-Id: I28254605db5026df5624ff6495dbeb294624a210
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 233ed5688e
gnu: r-fgsea: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.30.0.

Change-Id: Ib82a7b868f39594f0b2211a892596d638a5805d0
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 9c78531a2a
gnu: r-fcscan: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.18.0.

Change-Id: Iaa8325f526e06c25775421023d9f05ede76a54a3
2024-05-08 12:53:31 +02:00
Ricardo Wurmus e82b89a306
gnu: r-anota2seq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.26.0.

Change-Id: I9cfa5e25e1b0d7c1b0ae86b3d3d99c836579f3dc
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 3187bbde7b
gnu: r-anota: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.52.0.

Change-Id: I31b0c1073f1b00b3b5d37cf7660edfd0660e4510
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0e31943e5e
gnu: r-gosemsim: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.0.

Change-Id: I68681741553872d7928d8ef6388d9cecfb67c98f
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f8ac2124cb
gnu: r-heatplus: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.12.0.

Change-Id: Ib77fe8736bcd1a2e893de81afe77b66fd9a6d730
2024-05-08 12:53:31 +02:00
Ricardo Wurmus db03970daf
gnu: r-varianttools: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.46.0.

Change-Id: Icd4ad4878d0bcd47f14fae911adae373dbcabe90
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5fee991a00
gnu: r-tradeseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.18.0.

Change-Id: Ifb79112bed8aed760a3c100894f42554ed363e42
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 61bcb44396
gnu: r-ioniser: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.28.0.

Change-Id: Iae0b93ca195793240e5e5e9202685207868636f9
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5180609ccf
gnu: r-linnorm: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.28.0.

Change-Id: Iaead2fd1bb4044ceccb9192f4fefb014f9a6c08b
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 7c84c1d56b
gnu: r-lumi: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.56.0.

Change-Id: I99c34bf0c24123b0be4580b3d2211c55690fa248
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 2181f4cfb6
gnu: r-lefser: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.

Change-Id: Ife3994b119fe09ae9c1cf7b6604fd20aea59332a
2024-05-08 12:53:31 +02:00