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Author SHA1 Message Date
Marius Bakke 582537d930
gnu: python-sphinx: Update to 4.0.1. 
* gnu/packages/sphinx.scm (python-sphinx): Update to 4.0.1.
 2021-05-22 17:08:12 +02:00
Marius Bakke 78c2f6e3ad
gnu: python-pyopenssl: Update to 20.0.1. 
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 20.0.1.
 2021-05-22 17:08:12 +02:00
Marius Bakke b12a916e35
gnu: java.scm: Adjust to new #:disallowed-references convention. 
* gnu/packages/java.scm (icedtea-8, openjdk9, openjdk10,
openjdk11)[arguments]: Adjust #:disallowed-references.
 2021-05-22 17:08:12 +02:00
Marius Bakke d58e2f2723
gnu: libblockdev: Prepare for GLib 2.58. 
* gnu/packages/patches/libblockdev-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/disk.scm (libblockdev)[source](patches): New field.
 2021-05-22 16:04:59 +02:00
Marius Bakke 404feffa30
gnu: ucx: Restore (and adapt) ioctl fallback patch. 
This is a followup to 4ebd4a58ce which
removed the patch, but it was still necessary for some dependents.

* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
 2021-05-22 16:04:59 +02:00
Marius Bakke 19ea43c907
gnu: cmdtest: Do not propagate any inputs. 
* gnu/packages/check.scm (cmdtest)[propagated-inputs]: Move everything ...
[inputs]: ... here.  New field.
 2021-05-22 16:04:59 +02:00
Marius Bakke 0bdb7d3841
gnu: cmdtest: Update to 0.32-14-gcdfe14e. 
* gnu/packages/check.scm (cmdtest): Update to 0.32-14-gcdfe14e.
[source]: Switch to GIT-FETCH.
[arguments]: Remove #:phases and #:python.  Add #:tests?.
[native-inputs]: Change from PYTHON2-CLIAPP, PYTHON2-MARKDOWN, and
PYTHON-TTYSTATUS to their respective Python 3 variants.
 2021-05-22 16:04:59 +02:00
Marius Bakke 10c8aa039d
gnu: python2-ttystatus: Add Python 3 variant. 
* gnu/packages/python-xyz.scm (python2-ttystatus): Rename to ...
(python-ttystatus): ... this.
[name, native-inputs, arguments]: Adjust accordingly.
[descriptions]: Remove mentions of Python version and add markup.
(python2-ttystatus): Use PACKAGE-WITH-PYTHON2.
 2021-05-22 16:04:59 +02:00
Marius Bakke 0d0e3bee03
gnu: python2-cliapp: Add Python 3 variant. 
* gnu/packages/python-xyz.scm (python2-cliapp): Rename to ...
(python-cliapp): ... this.
[name, native-inputs, propagated-inputs]: Adjust accordingly.
[arguments]: Disable tests.
[description]: Remove mentions of Python version and add markup.
(python2-cliapp): Use PACKAGE-WITH-PYTHON2.
 2021-05-22 16:04:59 +02:00
Marius Bakke 350833554b
gnu: python-coverage-test-runner: Add Python 3 variant. 
* gnu/packages/check.scm (python2-coverage-test-runner): Rename to ...
(python-coverage-test-runner): ... this.
[arguments, propagated-inputs]: Adjust for Python 3.
(python2-coverage-test-runner): Use PACKAGE-WITH-PYTHON2.
 2021-05-22 16:04:59 +02:00
Marius Bakke de47177400
gnu: sharutils: 'which' is a native input. 
* gnu/packages/compression.scm (sharutils)[inputs]: Rename to ...
[native-inputs]: ... this.
 2021-05-22 16:04:58 +02:00
Marius Bakke 9fe4e45be7
gnu: sharutils: Prepare for GCC 10. 
* gnu/packages/compression.scm (sharutils)[source](snippet): Add substitution
to avoid duplicate header definitions.
[arguments]: Remove trailing #t.
 2021-05-22 16:04:58 +02:00
Marius Bakke c1947a8c7d
gnu: ntp: Prepare for GCC 10. 
* gnu/packages/ntp.scm (ntp)[source](patches): New field.
 2021-05-22 16:04:58 +02:00
Christopher Baines fbabf0bec6
gnu: guix: Update to 9f2b2c4. 
* gnu/packages/package-management.scm (guix): Update to 9f2b2c4.
 2021-05-22 09:18:54 +01:00
Ricardo Wurmus 9f2b2c432b
gnu: Add emacs-poly-r. 
* gnu/packages/statistics.scm (emacs-poly-r): New variable.
 2021-05-22 07:14:29 +02:00
Ricardo Wurmus 9860c4fdce
gnu: Add emacs-poly-noweb. 
* gnu/packages/emacs-xyz.scm (emacs-poly-noweb): New variable.
 2021-05-22 07:14:28 +02:00
Eric Bavier a1a7a33b17
gnu: pinball: Update to 3.1.20201218. 
* gnu/packages/games.scm (pinball): Update to 3.1.20201218.
[source]: Tarballs no longer published on sourceforge, so use git-fetch.
[native-inputs]: New field for bootstrapping inputs.
[inputs]: Add libltdl.
[arguments]: Add custom 'bootstrap' phase.
* gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source.
* gnu/packages/patches/pinball-const-fix.patch,
gnu/packages/patches/pinball-cstddef.patch,
gnu/packages/patches/pinball-missing-separators.patch,
gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2021-05-21 22:37:54 -05:00
Björn Höfling 8aab6e0dfb
gnu: python-scour: Update to 0.38.2. 
* gnu/packages/python-xyz.scm (python-scour): Update to 0.38.2.
 2021-05-21 22:20:13 +02:00
Björn Höfling b6c83dc5ae
gnu: python-scour: Correct version. 
* gnu/packages/python-xyz.scm (python-scour): Correct version string
from 038.1 to 0.38.1.
 2021-05-21 21:57:01 +02:00
Michael Rohleder bd382fae71
gnu: xfce4-screenshooter: Update to 1.9.9. 
* gnu/packages/xfce.scm (xfce4-screenshooter): Update to 1.9.9.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-05-21 12:21:14 -04:00
Roel Janssen 082988afac
gnu: Fix build for ldc. 
* gnu/packages/dlang.scm (ldc): Disable tests that use ptrace.
 2021-05-21 18:05:07 +02:00
Xinglu Chen 97c2e9e4f8
gnu: Add emacs-purescript-mode. 
* gnu/packages/emacs-xyz.scm (emacs-purescript-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-21 17:57:30 +02:00
Leo Famulari ed5a75c730
gnu: linux-libre: Update to 5.12.5. 
* gnu/packages/linux.scm (linux-libre-5.11-version, deblob-scripts-5.11,
linux-libre-5.11-pristine-source, linux-libre-5.11-source,
linux-libre-headers-5.11, linux-libre-5.11): Remove variables.
(linux-libre-version, linux-libre-pristine-source, linux-libre-source,
linux-libre): Update to the 5.12 kernel series.
(linux-libre-with-bpf): Update to the 5.12 kernel series.
* gnu/packages/aux-files/linux-libre/5.11-arm.conf,
gnu/packages/aux-files/linux-libre/5.11-arm64.conf,
gnu/packages/aux-files/linux-libre/5.11-i686.conf,
gnu/packages/aux-files/linux-libre/5.11-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
 2021-05-21 11:40:12 -04:00
Nicolas Goaziou e7f97f8af4
gnu: python-pikepdf: Update to 2.12.1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.1.
 2021-05-21 17:36:34 +02:00
Nicolas Goaziou f161623913
gnu: giac: Update to 1.7.0-9. 
* gnu/packages/algebra.scm (giac): Update to 1.7.0-9.
 2021-05-21 17:23:01 +02:00
aecepoglu 652a03888e
gnu: Add font-victor-mono 
* gnu/packages/fonts.scm (font-victor-mono): New variable.
 2021-05-21 13:32:30 +02:00
Felix Gruber 4bf2637c49
gnu: sameboy: Update to 0.14.3 
* gnu/packages/emulators.scm (sameboy): Update to 0.14.3.
[native-inputs]: Remove gcc-9.
[arguments]: Use cc-for-target instead of hard-coding gcc.
 2021-05-21 13:08:57 +02:00
Paul A. Patience d2e531fa43
gnu: Add numdiff. 
* gnu/packages/maths.scm (numdiff): New variable.
 2021-05-21 12:34:33 +02:00
Sharlatan Hellseher 8b972bd531
gnu: sbcl-cl-html5-parser: Enable tests. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-html5-parser)
  [arguments]: Enable tests, clean up not required #:asd-systems.
  [native-inputs]: Add json-streams, split-sequence and stefil.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-21 11:15:49 +02:00
Sharlatan Hellseher 20eb41b66a
gnu: Add cl-json-streams. 
* gnu/packages/lisp-xyz.scm (sbcl-json-streams, ecl-json-streams,
  cl-json-streams): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-21 11:10:30 +02:00
Sharlatan Hellseher 2a60770f47
gnu: Add cl-woo. 
* gnu/packages/lisp-xyz.scm (sbcl-woo, ecl-woo, cl-woo): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-21 11:02:06 +02:00
Sharlatan Hellseher c4ebe659ab
gnu: Add cl-lev. 
* gnu/packages/lisp-xyz.scm (sbcl-lev, ecl-lev, cl-lev): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-21 10:28:13 +02:00
Sharlatan Hellseher 0195d9041a
gnu: Add cl-speedy-queue. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-speedy-queue, ecl-cl-speedy-queue,
  cl-speedy-queue): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-21 10:22:59 +02:00
Eric Bavier 1a06cafc07
gnu: detox: Update to 1.4.2. 
* gnu/packages/admin.scm (detox): Update to 1.4.2
[arguments]: Remove '#:tests?', provide customer 'check' phase.
 2021-05-20 22:20:01 -05:00
Guillaume Le Vaillant f7d2ae5754
gnu: kicad: Fix ngspice support. 
Fixes <https://bugs.gnu.org/48336>.

* gnu/packages/engineering.scm (kicad)[arguments]: Add 'fix-ngspice-detection'
  phase.
 2021-05-20 23:45:15 +02:00
Xinglu Chen cf95957985
gnu: emacs-org-super-agenda: Disable failing test. 
* gnu/packages/emacs-xyz.scm (emacs-org-super-agenda)[arguments]<#:phases>:
Disable the “org-super-agenda-test--:auto-tags” test.  The test failure was
caused by commit 71045f4e64.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-20 23:36:19 +02:00
Leo Famulari a74de6c41d
gnu: dav1d: Update to 0.9.0. 
* gnu/packages/video.scm (dav1d): Update to 0.9.0.
 2021-05-20 12:42:59 -04:00
Leo Famulari bead7dd736
gnu: libaom: Update to 3.1.0. 
* gnu/packages/video.scm (libaom): Update to 3.1.0.
 2021-05-20 12:42:49 -04:00
Maxim Cournoyer 26a69ae00c
gnu: emacs-ob-erlang: Update to 20210321. 
* gnu/packages/emacs-xyz.scm (emacs-ob-erlang): Update to 20210321.
 2021-05-20 10:21:30 -04:00
Efraim Flashner 28afc9baad
gnu: Add julia-recipesbase. 
* gnu/packages/julia-xyz.scm (julia-recipesbase): New variable.
 2021-05-20 17:12:26 +03:00
Efraim Flashner 6496b31a66
gnu: Add julia-static. 
* gnu/packages/julia-xyz.scm (julia-static): New variable.
 2021-05-20 17:12:26 +03:00
Efraim Flashner 130c13c877
gnu: Add julia-aqua. 
* gnu/packages/julia-xyz.scm (julia-aqua): New variable.
 2021-05-20 17:12:26 +03:00
Efraim Flashner 9e30f6590c
gnu: Add julia-pdmats. 
* gnu/packages/julia-xyz.scm (julia-pdmats): New variable.
 2021-05-20 17:12:26 +03:00
Efraim Flashner 47f67c565b
gnu: Add julia-stablerngs. 
* gnu/packages/julia-xyz.scm (julia-stablerngs): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner a9db2df4dd
gnu: Add julia-crayons. 
* gnu/packages/julia-xyz.scm (julia-crayons): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner dd331f491d
gnu: Add julia-parameters. 
* gnu/packages/julia-xyz.scm (julia-parameters): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner c1f7692fca
gnu: Add julia-unpack. 
* gnu/packages/julia-xyz.scm (julia-unpack): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner 9f3dae8f61
gnu: Add julia-safetestsets. 
* gnu/packages/julia-xyz.scm (julia-safetestsets): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner c0f5dd63d0
gnu: Add julia-sortingalgorithms. 
* gnu/packages/julia-xyz.scm (julia-sortingalgorithms): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner 673bd9a75b
gnu: Add julia-ifelse. 
* gnu/packages/julia-xyz.scm (julia-ifelse): New variable.
 2021-05-20 17:12:25 +03:00
Efraim Flashner f2af6d371a
gnu: Add julia-imagemagick-jll. 
* gnu/packages/julia-xyz.scm (julia-imagemagick-jll): New variable.
 2021-05-20 17:12:24 +03:00
Efraim Flashner 3372c562eb
gnu: Add julia-libtiff-jll. 
* gnu/packages/julia-xyz.scm (julia-libtiff-jll): New variable.
 2021-05-20 17:12:24 +03:00
Efraim Flashner f16cf693e9
gnu: Add julia-libpng-jll. 
* gnu/packages/julia-xyz.scm (julia-libpng-jll): New variable.
 2021-05-20 17:12:24 +03:00
Efraim Flashner b1cad99e83
gnu: Add julia-zstd-jll. 
* gnu/packages/julia-xyz.scm (julia-zstd-jll): New variable.
 2021-05-20 17:12:24 +03:00
Efraim Flashner 39dfc10bde
gnu: Add julia-jpegturbo-jll. 
* gnu/packages/julia-xyz.scm (julia-jpegturbo-jll): New variable.
 2021-05-20 17:12:24 +03:00
Maxim Cournoyer 2b425cf352
gnu: emacs-picpocket: Update to version 41. 
Partially resolves <https://issues.guix.gnu.org/47592>.

* gnu/packages/emacs-xyz.scm (emacs-picpocket): Update to version 41.
 2021-05-20 10:09:58 -04:00
Ricardo Wurmus 7ff515aa51
gnu: r-rhdf5filters: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Update to 1.2.1.
 2021-05-20 14:43:34 +02:00
Ricardo Wurmus 1d7470874e
gnu: r-multidataset: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.2.
 2021-05-20 14:43:34 +02:00
Guillaume Le Vaillant 79922038bc
gnu: txr: Update to 259. 
* gnu/packages/lisp.scm (txr): Update to 259.
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher cb789cb43c
gnu: sbcl-flexi-streams: Update to 1.0.19. 
* gnu/packages/lisp-xyz.scm (sbcl-flexi-streams): Update to 1.0.19.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher f8238f9606
gnu: sbcl-fiveam: Update to 1.4.2. 
* gnu/packages/lisp-xyz.scm (sbcl-fiveam): Update to 1.4.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher f724e508e3
gnu: sbcl-golden-utils: Update to 0.0.0-3.fe1898f. 
* gnu/packages/lisp-xyz.scp (sbcl-golden-utils): Update to 0.0.0-3.fe1898f.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher 7b05665481
gnu: sbcl-numcl: Update to 0.2.0-2.3dcdb0e. 
* gnu/packages/lisp-xyz.scm (sbcl-numcl): Update to 0.2.0-2.3dcdb0e.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher ca23ba4f28
gnu: sbcl-pzmq: Update to 0.0.0-2.6f7b2ca. 
* gnu/packages/lisp-xyz.scm (sbcl-pzmq): Update to 0.0.0-2.6f7b2ca.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Nicolas Goaziou 71045f4e64
gnu: emacs-org: Update to 9.4.6. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.6.
[arguments]<phases>: Remove unnecessary phase.
(emacs-org-contrib): Update to 20210519.
 2021-05-20 13:58:29 +02:00
Pierre Neidhardt 562727d444
gnu: nyxt: Update to 2.0.0. 
* gnu/packages/web-browsers.scm (nyxt): Update to 2.0.0.
[arguments]: Remove useless set-version phase.
[inputs]: Remove unused file-attributes.
[description]: Follow upstream updates.
 2021-05-20 12:31:50 +02:00
Pierre Neidhardt cb68765a58
gnu: sbcl-iolib: Also build iolib/os. 
* gnu/packages/lisp-xyz.scm (sbcl-iolib)[arguments]: Add iolib/os to
asd-systems.
 2021-05-20 12:31:50 +02:00
Ricardo Wurmus 7d3ad4c256
gnu: r-lme4: Update to 1.1-27. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-27.
[propagated-inputs]: Remove r-statmod.
 2021-05-20 10:58:18 +02:00
Ricardo Wurmus afd1391b2a
gnu: r-diptest: Update to 0.76-0. 
* gnu/packages/statistics.scm (r-diptest): Update to 0.76-0.
 2021-05-20 10:58:18 +02:00
Ricardo Wurmus c45cdd9035
gnu: r-statmod: Update to 1.4.36. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.36.
 2021-05-20 10:58:18 +02:00
Ricardo Wurmus e88fef1f43
gnu: r-viridis: Update to 0.6.1. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.1.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 20ab7a023c
gnu: r-rmarkdown: Update to 2.8. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.8.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 5e46eb05fb
gnu: r-hms: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-hms): Update to 1.1.0.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 057b44daa7
gnu: r-devtools: Update to 2.4.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.1.
[propagated-inputs]: Remove r-jsonlite.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 48ba3ab92f
gnu: r-dplyr: Update to 1.0.6. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.6.
[propagated-inputs]: Add r-pillar.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 0bcf86c35b
gnu: r-tibble: Update to 3.1.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.2.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus f29a1ade9d
gnu: r-stringi: Update to 1.6.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.6.2.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus bf67249071
gnu: r-matrix: Update to 1.3-3. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-3.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus cb0ea86dcb
gnu: r-pdftools: Update to 3.0.1. 
* gnu/packages/cran.scm (r-pdftools): Update to 3.0.1.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 7361897630
gnu: r-textshaping: Update to 0.3.4. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.4.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 0df3c20243
gnu: r-seuratobject: Update to 4.0.1. 
* gnu/packages/cran.scm (r-seuratobject): Update to 4.0.1.
[propagated-inputs]: Remove r-sctransform.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 428fda3587
gnu: r-rsample: Update to 0.1.0. 
* gnu/packages/cran.scm (r-rsample): Update to 0.1.0.
[propagated-inputs]: Add r-lifecycle.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus e033e7c7d4
gnu: r-clusterr: Update to 1.2.4. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.4.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 65c01f0abb
gnu: r-rfast: Update to 2.0.3. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.3.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 99bdcea1ea
gnu: r-oai: Update to 0.3.2. 
* gnu/packages/cran.scm (r-oai): Update to 0.3.2.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus e928599671
gnu: r-proxyc: Update to 0.2.0. 
* gnu/packages/cran.scm (r-proxyc): Update to 0.2.0.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 630239af23
gnu: r-caret: Update to 6.0-88. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-88.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 87bc2e125f
gnu: r-bio3d: Update to 2.4-2. 
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-2.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 6d73b27e45
gnu: r-terra: Update to 1.2-10. 
* gnu/packages/cran.scm (r-terra): Update to 1.2-10.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 1ab7a734ff
gnu: r-systemfonts: Update to 1.0.2. 
* gnu/packages/cran.scm (r-systemfonts): Update to 1.0.2.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 3dc2e7b082
gnu: r-ibreakdown: Update to 2.0.1. 
* gnu/packages/cran.scm (r-ibreakdown): Update to 2.0.1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 8c1e07a266
gnu: r-ggplotify: Update to 0.0.7. 
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.7.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 72a4b4e34f
gnu: r-msigdbr: Update to 7.4.1. 
* gnu/packages/cran.scm (r-msigdbr): Update to 7.4.1.
[propagated-inputs]: Add r-babelgene.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 76cccb0971
gnu: r-pegas: Update to 1.0-1. 
* gnu/packages/cran.scm (r-pegas): Update to 1.0-1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus da372ae603
gnu: r-valr: Update to 0.6.3. 
* gnu/packages/cran.scm (r-valr): Update to 0.6.3.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus bb5cc6548e
gnu: r-irkernel: Update to 1.2. 
* gnu/packages/cran.scm (r-irkernel): Update to 1.2.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus c787a71189
gnu: r-fields: Update to 12.3. 
* gnu/packages/cran.scm (r-fields): Update to 12.3.
[propagated-inputs]: Add r-viridis.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus c1648123c2
gnu: r-rnifti: Update to 1.3.1. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.3.1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus ecf62c7321
gnu: r-softimpute: Update to 1.4-1. 
* gnu/packages/cran.scm (r-softimpute): Update to 1.4-1.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus ad88775716
gnu: r-fmsb: Update to 0.7.1. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 2620a65479
gnu: r-ouch: Update to 2.17. 
* gnu/packages/cran.scm (r-ouch): Update to 2.17.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 4341da5882
gnu: r-biocmanager: Update to 1.30.15. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.15.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus cd488787af
gnu: r-rcppparallel: Update to 5.1.4. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.4.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus d381b1ac33
gnu: r-performance: Update to 0.7.2. 
* gnu/packages/cran.scm (r-performance): Update to 0.7.2.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus dd99de3f13
gnu: r-sandwich: Update to 3.0-1. 
* gnu/packages/cran.scm (r-sandwich): Update to 3.0-1.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus e35482dde9
gnu: r-flextable: Update to 0.6.6. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.6.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 6ea508485b
gnu: r-sjmisc: Update to 2.8.7. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.7.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus f03f45c927
gnu: r-sjlabelled: Update to 1.1.8. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.8.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus f2b9129d21
gnu: r-insight: Update to 0.14.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.14.0.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus ada22a989c
gnu: r-overlap: Update to 0.3.4. 
* gnu/packages/cran.scm (r-overlap): Update to 0.3.4.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 033977f7fb
gnu: r-arules: Update to 1.6-8. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-8.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 5072b7b42a
gnu: r-cubature: Update to 2.0.4.2. 
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.2.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 1bccefef85
gnu: r-pillar: Update to 1.6.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.6.1.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus c479174108
gnu: r-xfun: Update to 0.23. 
* gnu/packages/cran.scm (r-xfun): Update to 0.23.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 48024ed634
gnu: r-corrplot: Update to 0.88. 
* gnu/packages/cran.scm (r-corrplot): Update to 0.88.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 31d01cf1e1
gnu: r-inline: Update to 0.3.18. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.18.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 86ac5ac921
gnu: r-distillery: Update to 1.2-1. 
* gnu/packages/cran.scm (r-distillery): Update to 1.2-1.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 263f122e34
gnu: r-dendextend: Update to 1.15.1. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.15.1.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus 581835a323
gnu: r-shape: Update to 1.4.6. 
* gnu/packages/cran.scm (r-shape): Update to 1.4.6.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus 90f206cf96
gnu: r-colorspace: Update to 2.0-1. 
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-1.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus a2621406a1
gnu: r-bslib: Update to 0.2.5.1. 
* gnu/packages/cran.scm (r-bslib): Update to 0.2.5.1.
[propagated-inputs]: Remove r-digest.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus 2bfe0f5fed
gnu: r-sass: Update to 0.4.0. 
* gnu/packages/cran.scm (r-sass): Update to 0.4.0.
[propagated-inputs]: Remove r-digest.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus a819f9c497
gnu: r-htmltable: Update to 2.2.1. 
* gnu/packages/cran.scm (r-htmltable): Update to 2.2.1.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus 1a2b94668e
gnu: r-httpuv: Update to 1.6.1. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.1.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus 2a32b69ed3
gnu: r-cachem: Update to 1.0.5. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.5.
 2021-05-20 10:58:14 +02:00
Ricardo Wurmus c88e05b2db
gnu: Add r-babelgene. 
* gnu/packages/cran.scm (r-babelgene): New variable.
 2021-05-20 10:58:14 +02:00
Tobias Geerinckx-Rice 191e2347c5
gnu: isc-dhcp: Update bundled BIND to 9.11.32. 
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.32.
 2021-05-20 10:50:35 +02:00
Tobias Geerinckx-Rice cb3f25f43b
gnu: bind: Update to 9.16.16. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.16.
 2021-05-20 10:50:35 +02:00
Leo Famulari 516e9dda6b
gnu: linux-libre 5.4: Update to 5.4.120. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.120.
(linux-libre-5.4-pristine-source): Update hash.
 2021-05-19 23:43:07 -04:00
Leo Famulari 2b3bfa5140
gnu: linux-libre 5.10: Update to 5.10.38. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.38.
(linux-libre-5.10-pristine-source): Update hash.
 2021-05-19 23:43:07 -04:00
Leo Famulari 7bcf62b96b
gnu: linux-libre: Update to 5.11.22. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.22.
(linux-libre-5.11-pristine-source): Update hash.
 2021-05-19 23:43:07 -04:00
Leo Famulari cb94e88dfe
gnu: linux-libre 5.12: Update to 5.12.5. 
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.5.
(linux-libre-5.12-pristine-source): Update hash.
 2021-05-19 23:43:03 -04:00
Maxim Cournoyer a09cdf1f9d
services: opendht: Fix hang at boot. 
Fixes <https://issues.guix.gnu.org/48521>.

The problem was caused by the 'file-system-mapping' record not being in scope.

* gnu/services/networking.scm (opendht-shepherd-service): Import the (gnu
system file-systems) module.
[requirement]: Depend on networking, to avoid spurious output.
[modules]: New field.
[start] <group>: New argument.
 2021-05-19 22:46:52 -04:00
Leo Famulari 75abb01247
Revert "gnu: rxvt-unicode: Remove extraneous input." 
This reverts commit c05b070cff.

This commit was not quite correct, since rxvt-unicode still depends on
libX11 directly.

* gnu/packages/xdisorg.scm (rxvt-unicode)[inputs]: Add libx11.
 2021-05-19 20:48:15 -04:00
Felix Gruber e942ed8159
gnu: Add schiffbruch. 
* gnu/packages/games.scm (schiffbruch): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-19 23:18:12 +02:00
Ricardo Wurmus 7dc75d5fd3
gnu: guile-redis: Update to 2.1.1. 
* gnu/packages/guile-xyz.scm (guile-redis): Update to 2.1.1.
 2021-05-19 23:11:17 +02:00
Efraim Flashner c50c56eacd
gnu: perl-log-log4perl: Update to 1.54. 
* gnu/packages/perl.scm (perl-log-log4perl): Update to 1.54.
 2021-05-19 23:26:28 +03:00
Efraim Flashner 5cdd95eb69
gnu: perl-carp-assert-more: Update to 1.26. 
* gnu/packages/perl.scm (perl-carp-assert-more): Update to 1.26.
 2021-05-19 23:19:03 +03:00
Efraim Flashner b415a95930
gnu: perl-date-manip: Update to 6.85. 
* gnu/packages/perl.scm (perl-date-manip): Update to 6.85.
 2021-05-19 23:16:55 +03:00
Efraim Flashner 837ed5e7ba
gnu: perl-datetime-format-natural: Update to 1.12. 
* gnu/packages/perl.scm (perl-datetime-format-natural): Update to 1.12.
 2021-05-19 23:13:40 +03:00
Efraim Flashner 81ccab4027
gnu: perl-datetime: Update to 1.54. 
* gnu/packages/perl.scm (perl-datetime): Update to 1.54.
 2021-05-19 23:10:35 +03:00
Efraim Flashner 97d3019074
gnu: perl-datetime-timezone: Update to 2.47. 
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.47.
 2021-05-19 23:05:09 +03:00
Efraim Flashner f9fc3373e7
gnu: perl-dbd-pg: Update to 3.14.2. 
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.14.2.
 2021-05-19 23:01:26 +03:00
Efraim Flashner 15e3a8145c
gnu: perl-inline-c: Update to 0.81. 
* gnu/packages/perl.scm (perl-inline-c): Update to 0.81.
 2021-05-19 22:56:11 +03:00
Efraim Flashner fb0f7424df
gnu: perl-inline: Update to 0.86. 
* gnu/packages/perl.scm (perl-inline): Update to 0.86.
 2021-05-19 22:56:11 +03:00
Efraim Flashner 7403498b74
gnu: perl-mail-dkim: Update to 1.20200907. 
* gnu/packages/mail.scm (perl-mail-dkim): Update to 1.20200907.
 2021-05-19 22:53:08 +03:00
Efraim Flashner ef8176cc80
gnu: perl-mime-types: Update to 2.20. 
* gnu/packages/perl.scm (perl-mime-types): Update to 2.20.
 2021-05-19 22:51:57 +03:00
Efraim Flashner 46917a9ebc
gnu: perl-modern-perl: Update to 1.20200211. 
* gnu/packages/perl.scm (perl-modern-perl): Update to 1.20200211.
 2021-05-19 22:50:09 +03:00
Efraim Flashner 43c156ea72
gnu: perl-mojolicious: Update to 9.17. 
* gnu/packages/perl-web.scm (perl-mojolicious): Update to 9.17.
 2021-05-19 22:49:33 +03:00
Efraim Flashner 81bba37571
gnu: perl-mouse: Update to 2.5.10. 
* gnu/packages/perl.scm (perl-mouse): Update to 2.5.10.
 2021-05-19 22:46:48 +03:00