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Author SHA1 Message Date
Ricardo Wurmus 4aee04819e
gnu: Add r-janitor.
* gnu/packages/cran.scm (r-janitor): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 12d206901a
gnu: Add r-paletteer.
* gnu/packages/cran.scm (r-paletteer): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 9c58c87aa9
gnu: Add r-prismatic.
* gnu/packages/cran.scm (r-prismatic): New variable.
2022-07-04 13:48:57 +02:00
Ricardo Wurmus 738e4eea14
gnu: Add r-colorway.
* gnu/packages/statistics.scm (r-colorway): New variable.
2022-07-04 13:48:57 +02:00
Jean-Pierre De Jesus DIAZ 31e4eaf52c
gnu: vpnc: Add bsd-2 license.
* gnu/packages/vpn.scm (vpnc)[license]: Add bsd-2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Jean-Pierre De Jesus DIAZ bb88505ee8
gnu: vpnc: Fix cross-compilation.
* gnu/packages/vpn.scm (vpnc): Fix cross-compilation.
  [native-inputs]: Add conditional input of `this-package' (vpnc)
  to reuse the man page and add `pkg-config'.
  [arguments]: Use G-Expressions.
  [arguments]: Make use of `make-flags' instead of using substitutions.
  [arguments]: Remove unneeded deletion of `configure'.
  [arguments]: Use `pkg-config' to search for libgcrypt.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Sharlatan Hellseher e8e7b4cdae
gnu: Add giza
* gnu/packages/maths.scm (giza): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao 84d413d2fd
gnu: solidity: Update to 0.8.15.
* gnu/packages/solidity.scm (solidity): Update to 0.8.15.
[source]: Use Github release.
[arguments]<#:phases>: Remove phase 'create-commit_hash.txt'.
Restore phase 'configure' and phase 'install'.
Remove modifications applied to the phase 'build' and phase 'check'.
Add phase 'unbundle-3rd-party-dependencies'.
[inputs]: Add fmt-for-solidity, range-v3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao b49c2e558d
gnu: Add fmt-for-solidity.
* gnu/packages/pretty-print.scm (fmt-for-solidity): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao da6ea4ab88
gnu: solidity: Use G-expressions.
* gnu/packages/solidity.scm (solidity)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:05 +02:00
Zhu Zihao 0e64835b2e
gnu: z3: Prefer CMake to build the package.
Z3 developer recommends to use CMake to build Z3 except the OCaml bindings.
Use CMake also enable us to cross compile z3.

* gnu/packages/maths.scm (z3)[build-system]: Use cmake-build-system.
[arguments]<#:configure-flags>: Add flags for CMake.
<#:phases>: Remove stale phase 'fix-compatability'.
In phase 'check', build the z3 test binary and don't test when cross
compiling.
Add phase 'compile-python-modules' phase to generate python bytecode cache for
z3 python binding.
Add phase 'fix-z3-library-path' to help z3 pythong binding to find the z3
shared library.

(ocaml-z3)[build-system]: Override the inherited value with 'gnu-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:04 +02:00
Zhu Zihao cec5142183
gnu: z3: Update to 4.8.17.
* gnu/packages/maths.scm (z3): Update to 4.8.17.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:04 +02:00
Zhu Zihao 3366be5db0
gnu: z3: Use G-expressions.
* gnu/packages/maths.scm (z3)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-04 12:29:04 +02:00
Pierre Neidhardt 7cddd130df
gnu: sbcl-nkeymaps: Update to 1.0.0.
* gnu/packages/lisp-xyz.scm (sbcl-nkeymaps): Update to 1.0.0.
2022-07-04 11:03:06 +02:00
Efraim Flashner b56dad9b2c
gnu: tbb: Fix building on riscv64-linux.
* gnu/packages/tbb.scm (tbb)[source]: Add patch.
* gnu/packages/patches/tbb-other-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-07-04 11:14:41 +03:00
Leo Famulari 4d126e7762
gnu: linux-libre 4.9: Update to 4.9.321.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.321.
(linux-libre-4.9-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari 2a9e397043
gnu: linux-libre 4.14: Update to 4.14.286.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.286.
(linux-libre-4.14-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari a2e56e6a1c
gnu: linux-libre 4.19: Update to 4.19.250.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.250.
(linux-libre-4.19-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari 71281783fc
gnu: linux-libre 5.4: Update to 5.4.203.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.203.
(linux-libre-5.4-pristine-source): Update hash.
2022-07-03 23:56:14 -04:00
Leo Famulari 004be75424
gnu: linux-libre 5.10: Update to 5.10.128.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.128.
(linux-libre-5.10-pristine-source): Update hash.
2022-07-03 23:56:13 -04:00
Leo Famulari 5df7a33af7
gnu: linux-libre 5.15: Update to 5.15.52.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.52.
(linux-libre-5.15-pristine-source): Update hash.
2022-07-03 23:56:13 -04:00
Leo Famulari 9cd92b259b
gnu: linux-libre: Update to 5.18.9.
* gnu/packages/linux.scm (linux-libre-5.18-version): Update to 5.18.9.
(linux-libre-5.18-pristine-source): Update hash.
2022-07-03 23:56:13 -04:00
Raghav Gururajan a78d101eb3
gnu: bitmask: Fix loading of GUI.
* gnu/packages/vpn.scm (bitmask)[inputs]: Add qtgraphicaleffects.
2022-07-03 21:59:20 -04:00
Christopher Baines e069de452a
services: guix-build-coordinator: Fix passing parallel-hooks.
The previous approach didn't support a simple alist.

* gnu/services/guix.scm (make-guix-build-coordinator-start-script): Fix
passing parallel-hooks in to the start gexp.
2022-07-03 20:38:09 +01:00
Christopher Baines 430848c6bd
gnu: guix-build-coordinator: Update to 0-56.290ba67.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-56.290ba67.
2022-07-03 20:38:04 +01:00
Pierre Neidhardt f59f9afdb8
gnu: sbcl-nfiles: Update to 1.0.0.
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 1.0.0.
2022-07-03 20:39:06 +02:00
Pierre Neidhardt 875e803e60
gnu: abcl: Update to 1.9.0.
* gnu/packages/java.scm (abcl): Update to 1.9.0.
* gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0.
2022-07-03 20:36:48 +02:00
Pierre Neidhardt 3a45cc634e
gnu: abcl: Fix loading of cl-* packages.
* gnu/packages/java.scm (abcl)[native-search-paths]: Add XDG_DATA_DIRS where
to cl-* libraries get installed.
2022-07-03 20:36:48 +02:00
Pierre Neidhardt 13cc3da6b6
gnu: libfixposix: Add C_INCLUDE_PATH to the native-search-paths.
* gnu/packages/c.scm (libfixposix)[native-search-paths]: Add C_INCLUDE_PATH.

This fixes the loading of cl-iolib among others.
2022-07-03 20:36:47 +02:00
Liliana Marie Prikler eb44b1f304
gnu: renpy: Install sdk-fonts.
Without these fonts, the launcher will fail to launch.

* gnu/packages/game-development.scm (renpy)[install]: Also recursively copy
sdk-fonts.
2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 65c9ecce2a
gnu: python-renpy: Update to 8.0.0.
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.0.
[source]: Revert back to url-fetch.  Also patch module/setup.py to not refer
to missing sources.
2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 4cd5f03088
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.0.
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.0.0.
[source]: Revert to url-fetch.
Also add back the snippet to remove generated sources.
2022-07-03 17:07:09 +02:00
Liliana Marie Prikler 3e987cf521
gnu: Add font-artifika.
* gnu/packages/fonts.scm (font-artifika): New variable.
2022-07-03 17:07:09 +02:00
r0man b4815e570d
gnu: Add Climate Data Operators.
* gnu/packages/geo.scm (cdo): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
Antero Mejr 486251d440
gnu: Add python-deepdish.
* gnu/packages/python-science.scm (python-deepdish): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
Artyom V. Poptsov 91a5176538
gnu: Add utest-h.
* gnu/packages/c.scm (utest-h): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 16:04:23 +02:00
Ludovic Courtès 9dfe5142bd
gnu: solidity: Remove input labels.
* gnu/packages/solidity.scm (solidity)[native-inputs]: Remove labels.
2022-07-03 16:04:22 +02:00
Pierre Neidhardt bee129a806
gnu: sbcl-fof: Also build the fof/mf subsystem.
* gnu/packages/lisp-xyz.scm (sbcl-fof)[arguments]: Also build the fof/mf subsystem.
[inputs]: Add sbcl-cl-json.
2022-07-03 14:21:02 +02:00
Ricardo Wurmus cba98b58bf
services: Add anonip-service-type.
* gnu/services/web.scm (anonip-configuration): New record type.
(anonip-configuration?, anonip-configuration-anonip,
anonip-configuration-input, anonip-configuration-output,
anonip-configuration-skip-private?, anonip-configuration-column,
anonip-configuration-replacement, anonip-configuration-ipv4mask,
anonip-configuration-ipv6mask, anonip-configuration-increment,
anonip-configuration-delimiter, anonip-configuration-regex): New procedures.
(anonip-service-type): New service type.
* doc/guix.texi (Log Rotation): Add subheading for Anonip Service.
2022-07-03 14:12:32 +02:00
Guillaume Le Vaillant e0d2f8164e
gnu: sbcl: Disable SB-SIMD module.
SB-SIMD gets enabled only on x86_64 CPUs supporting AVX2 instructions,
and some x86_64 CPUs don't.

Fixes <https://issues.guix.gnu.org/56353>.
Reported by Wensheng Xie <xiewensheng@hotmail.com>.

* gnu/packages/lisp.scm (sbcl)[arguments]: Disable SB-SIMD in the 'build' and
  'build-doc' phases.
2022-07-03 12:07:31 +02:00
Trevor Richards f89b581148
gnu: nim: Update to 1.6.6.
* gnu/packages/nim.scm (nim): Updated to 1.6.6.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-03 10:12:24 +01:00
Christopher Baines 12787d532f
gnu: propeller-binutils: Remove source patches.
None of the patches seem to apply. The patches that are not used with binutils
are probably too new for the specific commit used here, and the patches that
were once applied have probably been removed, so just don't apply any patches.

* gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that
don't apply.
2022-07-03 10:11:24 +01:00
Christopher Baines 207ef8758e
gnu: java-xpp3: Download source from ci.guix.gnu.org.
The www.extreme.indiana.edu site is now serving a redirect:

  This site has been deprecated. You can access an archive of this site at
  https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/.

Because this isn't a 404, as it probably should be, guix follows this redirect
and gets some content that isn't the file it asked for.

To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for
the file instead.

* gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org.
2022-07-03 10:11:24 +01:00
Efraim Flashner c145e51844
gnu: curl: Skip failing test on 32-bit architectures.
* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom
'skip-failing-tests phase on all 32-bit architectures.
2022-07-03 10:07:46 +03:00
Efraim Flashner 89fe091bb4
gnu: curl: Fix build on some systems.
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around
implicit function declaration.
* gnu/packages/patches/curl-easy-lock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-07-03 10:07:38 +03:00
muradm cec5a522e1
gnu: Add sqls 0.2.18.
* gnu/packages/databases (sqls): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:07 +02:00
muradm eed4494da7
gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0.
* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:07 +02:00
muradm 9b6226bcda
gnu: Add go-github-com-gorilla-websocket 1.5.0.
* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:06 +02:00
Ricardo Wurmus 4745be8514
gnu: r-ifultools: Patch in removed macros to fix build.
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility
macros.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus a0142125e6
gnu: r-with-tests: Update to 4.2.1.
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 3bb39fc370
gnu: r-tcgabiolinks: Update to 2.24.3.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus af06365a3e
gnu: r-bionetstat: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 26981da96b
gnu: r-bgeedb: Update to 2.22.3.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 5f03154c15
gnu: r-ggbio: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 11f30bfa3d
gnu: r-rsubread: Update to 2.10.4.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 0a5a06ed24
gnu: r-biosigner: Update to 1.24.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus fbb6489abd
gnu: r-ropls: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 4aabb20226
gnu: r-genomicscores: Update to 2.8.2.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus b7a5534e61
gnu: r-clusterprofiler: Update to 4.4.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus a17b7aabfd
gnu: r-batchelor: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 7ff0669cee
gnu: r-matrixgenerics: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02 23:56:10 +02:00
Ricardo Wurmus 605eda07df
gnu: r-zellkonverter: Update to 1.6.3.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus febec55f57
gnu: r-simplifyenrichment: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus c4113d3035
gnu: r-rtracklayer: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 5298b57d56
gnu: r-organismdbi: Update to 1.38.1.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 4e6026031a
gnu: r-limma: Update to 3.52.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 103d4d918f
gnu: r-ensembldb: Update to 2.20.2.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 5888776c87
gnu: r-gld: Update to 2.6.5.
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 1f6de97557
gnu: r-clubsandwich: Update to 0.5.7.
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus f6c9920f62
gnu: r-ranger: Update to 0.14.1.
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 9360df02d1
gnu: r-car: Update to 3.1-0.
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 2998060a53
gnu: r-gtools: Update to 3.9.2.2.
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus e9f9791b14
gnu: r-r-rsp: Update to 0.45.0.
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus 7d7712c9a0
gnu: r-r-utils: Update to 2.12.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0.
2022-07-02 23:56:09 +02:00
Ricardo Wurmus c37911f090
gnu: r-r-methodss3: Update to 1.8.2.
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus eae36e7aed
gnu: r-rcpparmadillo: Update to 0.11.2.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus a12211cd93
gnu: r-dbplyr: Update to 2.2.1.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 1e57895c5c
gnu: r-rlang: Update to 1.0.3.
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 2ddb659da1
gnu: r-dbi: Update to 1.1.3.
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 54c86cf5f8
gnu: r-nlme: Update to 3.1-158.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 764938a242
gnu: r-spacetime: Update to 1.2-8.
* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8.
[native-inputs]: Add r-knitr.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 621a3350c4
gnu: r-pkgdown: Update to 2.0.5.
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 3b656f1caf
gnu: r-downlit: Update to 0.4.1.
* gnu/packages/cran.scm (r-downlit): Update to 0.4.1.
[propagated-inputs]: Add r-withr.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus b16b702db7
gnu: r-clustree: Update to 0.5.0.
* gnu/packages/cran.scm (r-clustree): Update to 0.5.0.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 6e5a09f701
gnu: r-phangorn: Update to 2.9.0.
* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0.
[propagated-inputs]: Add r-generics.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus b427be3510
gnu: r-parsnip: Update to 1.0.0.
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 0a33bc0cba
gnu: r-tidyposterior: Update to 1.0.0.
* gnu/packages/cran.scm (r-tidyposterior): Update to 1.0.0.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus 2b09daaf71
gnu: r-dials: Update to 1.0.0.
* gnu/packages/cran.scm (r-dials): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 1c01ab0a84
gnu: r-rsample: Update to 1.0.0.
* gnu/packages/cran.scm (r-rsample): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-glue and r-pillar.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 67c83e104c
gnu: r-lobstr: Update to 1.1.2.
* gnu/packages/cran.scm (r-lobstr): Update to 1.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-prettyunits.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 6cbcdb0369
gnu: r-igraph: Update to 1.3.2.
* gnu/packages/cran.scm (r-igraph): Update to 1.3.2.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 0fd0ee6c4d
gnu: r-flexsurv: Update to 2.2.
* gnu/packages/cran.scm (r-flexsurv): Update to 2.2.
[propagated-inputs]: Add r-ggplot2 and r-statmod.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 092c5d941e
gnu: r-hardhat: Update to 1.2.0.
* gnu/packages/cran.scm (r-hardhat): Update to 1.2.0.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 1c16b70698
gnu: r-packrat: Update to 0.8.1.
* gnu/packages/cran.scm (r-packrat): Update to 0.8.1.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus ec2a12025e
gnu: r-additivitytests: Update to 1.1-4.1.
* gnu/packages/cran.scm (r-additivitytests): Update to 1.1-4.1.
[native-inputs]: Add r-knitr.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 9ccb54d8de
gnu: r-fda: Update to 6.0.4.
* gnu/packages/cran.scm (r-fda): Update to 6.0.4.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus efeb6ba6a1
gnu: r-r-devices: Update to 2.17.1.
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.1.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus c0df57aa1c
gnu: r-dalex: Update to 2.4.2.
* gnu/packages/cran.scm (r-dalex): Update to 2.4.2.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus b64963fd0f
gnu: r-lintr: Update to 3.0.0.
* gnu/packages/cran.scm (r-lintr): Update to 3.0.0.
[propagated-inputs]: Remove r-httr, r-rstudioapi, and r-testthat; add r-backports and
r-glue.
[native-inputs]: Add r-knitr.
2022-07-02 23:56:07 +02:00
Ricardo Wurmus 9d727b4a06
gnu: r-yulab-utils: Update to 0.0.5.
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.0.5.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus 9b071ecc40
gnu: r-bookdown: Update to 0.27.
* gnu/packages/cran.scm (r-bookdown): Update to 0.27.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus a158aae45e
gnu: r-globals: Update to 0.15.1.
* gnu/packages/cran.scm (r-globals): Update to 0.15.1.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus 4f5791a006
gnu: r-epi: Update to 2.47.
* gnu/packages/cran.scm (r-epi): Update to 2.47.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus 83d3d1fd5c
gnu: r-strucchange: Update to 1.5-3.
* gnu/packages/cran.scm (r-strucchange): Update to 1.5-3.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus 87f7a1a287
gnu: r-waveslim: Update to 1.8.3.
* gnu/packages/cran.scm (r-waveslim): Update to 1.8.3.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus b91165737d
gnu: r-admisc: Update to 0.29.
* gnu/packages/cran.scm (r-admisc): Update to 0.29.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus e1235cebb1
gnu: r-performance: Update to 0.9.1.
* gnu/packages/cran.scm (r-performance): Update to 0.9.1.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus dbdb2c549d
gnu: r-emmeans: Update to 1.7.5.
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.5.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus f235789e4d
gnu: r-sandwich: Update to 3.0-2.
* gnu/packages/cran.scm (r-sandwich): Update to 3.0-2.
[source]: Add snippet to remove generated files.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus e813a7e9fb
gnu: r-raster: Update to 3.5-21.
* gnu/packages/cran.scm (r-raster): Update to 3.5-21.
2022-07-02 23:56:06 +02:00
Ricardo Wurmus d0e6af6159
gnu: r-itsadug: Update to 2.4.1.
* gnu/packages/cran.scm (r-itsadug): Update to 2.4.1.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 1a43188826
gnu: r-tinytex: Update to 0.40.
* gnu/packages/cran.scm (r-tinytex): Update to 0.40.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 3a80c31e98
gnu: r-qap: Update to 0.1-2.
* gnu/packages/cran.scm (r-qap): Update to 0.1-2.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 572a9f0947
gnu: r-processx: Update to 3.6.1.
* gnu/packages/cran.scm (r-processx): Update to 3.6.1.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus c182db1f59
gnu: r-broom: Update to 1.0.0.
* gnu/packages/cran.scm (r-broom): Update to 1.0.0.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 5136d669a4
gnu: r-idr: Update to 1.3.
* gnu/packages/cran.scm (r-idr): Update to 1.3.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 139d7f6239
gnu: r-pkgload: Update to 1.3.0.
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.0.
[propagated-inputs]: Remove r-rstudioapi; add r-fs and r-glue.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 54abf9ba3a
gnu: r-ps: Update to 1.7.1.
* gnu/packages/cran.scm (r-ps): Update to 1.7.1.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus e1a2ff1793
gnu: r-partykit: Update to 1.2-16.
* gnu/packages/cran.scm (r-partykit): Update to 1.2-16.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus f7434908a6
gnu: r-reordercluster: Update to 2.0.
* gnu/packages/cran.scm (r-reordercluster): Update to 2.0.
[propagated-inputs]: Add r-gtools.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 961851c5d6
gnu: r-ggpmisc: Update to 0.4.7.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.7.
2022-07-02 23:56:05 +02:00
Ricardo Wurmus 01790a6cd6
gnu: r-restfulr: Update to 0.0.15.
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
2022-07-02 23:56:04 +02:00
Julien Lepiller c573c79ef3
gnu: ocaml-migrate-parsetree: Update to 2.4.0.
* gnu/package/ocaml.scm (ocaml-migrate-parsetree): Update to 2.4.0.
2022-07-02 22:25:46 +02:00
Julien Lepiller b811245168
gnu: ocaml-lwt-react: Update to 1.2.0.
* gnu/packages/ocaml.scm (ocaml-lwt-react): Update to 1.2.0.
2022-07-02 22:25:39 +02:00
Julien Lepiller f66ff1d267
gnu: ocaml-lwt: Update to 5.6.1.
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.6.1.
2022-07-02 22:25:36 +02:00
Julien Lepiller e0ecf85969
gnu: dune: Update to 3.3.1.
* gnu/packages/ocaml.scm (dune): Update to 3.3.1.
2022-07-02 22:25:33 +02:00
Julien Lepiller ac0415fdd9
gnu: ocaml-camlp-streams: Update to 5.0.1.
* gnu/packages/ocaml.scm (ocaml-camlp-streams): Update to 5.0.1.
2022-07-02 22:25:18 +02:00
Stephen Paul Weber b01043a8ce
gnu: Add ruby-blather.
* gnu/packages/ruby.scm (ruby-blather): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-07-02 12:01:41 -04:00
Stephen Paul Weber d633207a70
gnu: Add ruby-niceogiri.
* gnu/packages/ruby.scm (ruby-niceogiri): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-07-02 12:01:40 -04:00
Liliana Marie Prikler 48ff4bfcd7
gnu: gdk-pixbuf: Add removal hint for libx11.
* gnu/packages/gtk.scm (gdk-pixbuf)[propagated-inputs]: Add hint to remove
libx11 on core-updates.
2022-07-02 13:49:42 +02:00
Tomasz Jeneralczyk b02225b614
gnu: Add gdk-pixbuf-xlib.
This was part of gtk-pixbuf before but was split into its own library
in version 2.42.0: https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/tags/2.42.0

* gnu/packages/gtk.scm (gtk-pixbuf-xlib): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 13:49:35 +02:00
Liliana Marie Prikler aaf4694b9f
gnu: dino: Run tests.
* gnu/packages/messaging.scm (dino)[arguments]<#:tests?>: Drop.
<#:configure-flags>: Add “-DBUILD_TESTS=true”.
<#:phases>: Replace ‘check’ with manual invocations of the test binaries.
2022-07-02 13:37:20 +02:00
Liliana Marie Prikler fe111f404d
gnu: dino: Use new package style.
* gnu/packages/messaging.scm (dino)[arguments]: Convert to list of
G-Expressions.
[native-inputs, inputs]: Drop labels.
2022-07-02 13:37:20 +02:00
Raghav Gururajan 9b73b76cad
gnu: Add kaidan.
* gnu/packages/messaging.scm (kaidan): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 13:37:19 +02:00
Raghav Gururajan 3b32297e2d
gnu: bitmask: Update to 0.21.11.
* gnu/packages/vpn.scm (bitmask)[version]: Update to 0.21.11.
[inputs]: Add qtsvg.
2022-07-02 06:47:48 -04:00
Pierre Neidhardt e00431806f
gnu: sbcl-nhooks: Update to 1.1.1.
* gnu/packages/lisp-xyz.scm (sbcl-nhooks): Update to 1.1.1.
2022-07-02 12:38:26 +02:00
Thiago Jung Bauermann 0fb144549d
gnu: gdm: Use regular check.
* gnu/packages/gnome.scm (gdm)[native-inputs]: Replace check-0.14 with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:28 +02:00
Thiago Jung Bauermann fe16fe59ee
gnu: iodine: Use regular check.
* gnu/packages/networking.scm (iodine)[native-inputs]: Replace check-0.14 with
check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:28 +02:00
Thiago Jung Bauermann 4d77072c56
gnu: libsbml: Use regular check.
* gnu/packages/bioinformatics.scm (libsbml)[native-inputs]: Replace check-0.14
with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:28 +02:00
Thiago Jung Bauermann 71ccba00e7
gnu: edi: Use regular check.
* gnu/packages/enlightenment.scm (edi)[native-inputs]: Replace check-0.14 with
check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:27 +02:00
Thiago Jung Bauermann b6b47a4423
gnu: burp: Use regular check.
* gnu/packages/backup.scm (burp)[native-inputs]: Replace check-0.14 with
check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:27 +02:00
Thiago Jung Bauermann b35fd27831
gnu: libsigrokdecode: Use regular check.
* gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Replace
check-0.14 with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:27 +02:00
Thiago Jung Bauermann e116e43d0c
gnu: recutils: Use regular check.
* gnu/packages/databases.scm (recutils)[native-inputs]: Replace check-0.14
with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02 11:28:27 +02:00
Liliana Marie Prikler aeb8c4fbea
gnu: curl: Skip failing test on x86-32.
* gnu/packages/curl.scm (curl-7.84.0)[arguments]<#:phases>: When running on
x86-32, add a phase to skip test 3026 “curl_global_init thread-safety”.
2022-07-02 11:13:41 +02:00
Liliana Marie Prikler 2533e7f8d1
gnu: ibus-anthy: Modernize arguments.
* gnu/packages/ibus.scm (ibus-anthy)[arguments]: Convert to list of
G-Expressions.
2022-07-02 01:09:19 +02:00
Liliana Marie Prikler 421b47624c
gnu: ibus-anthy: Archaize wrapper.
This is a follow-up to 39b118776b, which
applied the wrong modernization metaphors.  For more information, see
<https://issues.guix.gnu.org/52576#16>.

* gnu/packages/ibus.scm (ibus-anthy)[#:phases]<wrap-programs>: Refer to
outputs by assoc-ref.
2022-07-02 01:05:16 +02:00
Ludovic Courtès bf7e07d299
services: openssh: Listen on IPv6 only when IPv6 is supported.
Fixes <https://issues.guix.gnu.org/56327>.
Reported by André Batista <nandre@riseup.net>.

* gnu/services/ssh.scm (openssh-shepherd-service)[ipv6-support?]: New
variable.
Use it in 'start' method.
2022-07-01 23:29:16 +02:00
Sughosha aba1ee5553
gnu: Add luppp.
* gnu/packages/music.scm (luppp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01 19:12:01 +02:00
Sughosha 697e75fca5
gnu: Add fabla.
* gnu/packages/music.scm (fabla): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01 19:08:46 +02:00
Sughosha 3b19dbd703
gnu: sorcer: Update to 1.1.3-1.cc7f6f5.
* gnu/packages/music.scm (sorcer): Update to 1.1.3-1.cc7f6f5.
[source]: Fetch with git; remove generated C++ file.
[native-inputs]: Replace faust with faust-0.9.67.

This update fixes the building of the package.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01 19:03:48 +02:00