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Author SHA1 Message Date
Tobias Geerinckx-Rice
b5cb462438
gnu: python-bcrypt: Update to 3.1.7. 
* gnu/packages/python-crypto.scm (python-bcrypt): Update to 3.1.7.
 2019-06-22 01:37:35 +02:00
Tobias Geerinckx-Rice
0107c9b8b2
gnu: python-twisted: Update to 19.2.1. 
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.1.
 2019-06-22 01:37:35 +02:00
Tobias Geerinckx-Rice
47d79541ba
gnu: python-astunparse: Update to 1.6.2. 
* gnu/packages/python-xyz.scm (python-astunparse): Update to 1.6.2.
 2019-06-22 01:37:35 +02:00
Tobias Geerinckx-Rice
1710b8f889
gnu: python-robotframework: Update to 3.1.2. 
* gnu/packages/python-xyz.scm (python-robotframework): Update to 3.1.2.
 2019-06-22 01:37:35 +02:00
Tobias Geerinckx-Rice
9b01a729b0
gnu: pdfpc: Update to 4.3.4. 
* gnu/packages/pdf.scm (pdfpc): Update to 4.3.4.
 2019-06-22 01:37:35 +02:00
Tobias Geerinckx-Rice
ba96c10ecd
gnu: exo: Update to 0.12.6. 
* gnu/packages/xfce.scm (exo): Update to 0.12.6.
 2019-06-22 01:02:15 +02:00
Tobias Geerinckx-Rice
e6de37df45
gnu: youtube-dl: Update to 2019.06.21. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.06.21.
 2019-06-22 01:02:15 +02:00
Tobias Geerinckx-Rice
c9750434aa
gnu: scrot: Name source checkout. 
* gnu/packages/xdisorg.scm (scrot)[source]: Add FILE-NAME.
 2019-06-22 01:02:14 +02:00
Tobias Geerinckx-Rice
6263202ba2
gnu: python-lmdb: Update to 0.95. 
* gnu/packages/databases.scm (python-lmdb): Update to 0.95.
 2019-06-22 01:02:14 +02:00
Tobias Geerinckx-Rice
41a3498128
gnu: cbatticon: Update to 1.6.9. 
* gnu/packages/admin.scm (cbatticon): Update to 1.6.9.
 2019-06-22 01:02:14 +02:00
Tobias Geerinckx-Rice
4286a6b085
gnu: gpgme: Update to 1.13.1. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.1.
 2019-06-21 23:20:36 +02:00
Tobias Geerinckx-Rice
cb1d8aeeb3
gnu: gnuplot: Update to 5.2.7. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.7.
 2019-06-21 23:20:36 +02:00
Tobias Geerinckx-Rice
dcdc3315c9
gnu: rclone: Update to 1.48.0. 
* gnu/packages/sync.scm (rclone): Update to 1.48.0.
 2019-06-21 23:20:36 +02:00
Nicolas Goaziou
a65f1e8eab
gnu: Move ratpoints into "sagemath.scm" 
* gnu/packages/algebra.scm (ratpoints): Move package from here...
* gnu/packages/sagemath.scm (ratpoints): ... to here.
 2019-06-21 22:57:19 +02:00
Gábor Boskovits
64dc8e9e59
gnu: Add openjdk12. 
* gnu/packages/java.scm(openjdk12): New variable.
 2019-06-21 22:50:25 +02:00
Pierre Neidhardt
38d4c21502
gnu: emacs-fish-completion: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-fish-completion): Update to 1.1.
 2019-06-21 19:52:54 +02:00
Andreas Enge
e6049c84da
gnu: zn-poly: Install all libraries. 
* gnu/packages/sagemath.scm (zn-poly): Install the static and the dynamic
library with its symlinks, and end a phase with #t.
 2019-06-21 16:35:27 +02:00
Ricardo Wurmus
b556abe416
gnu: khmer: Update to 3.0.0a3. 
* gnu/packages/bioinformatics.scm (khmer): Update to 3.0.0a3.
[source]: Remove patch; remove seqan in snippet.
[inputs]: Add seqan-1.
* gnu/packages/patches/khmer-use-libraries.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-06-21 11:41:54 +02:00
Mark H Weaver
c2c4ac0f69
gnu: icecat: Update to 60.7.2-guix1 [security fixes]. 
Includes fixes for CVE-2019-11707 and CVE-2019-11708.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.7.2-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
 2019-06-21 05:20:36 -04:00
Marius Bakke
c94cc6de39
gnu: ungoogled-chromium: Increase build timeout. 
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: New field.
 2019-06-21 11:05:05 +02:00
Mark H Weaver
6dc29ab4e2
gnu: linux-libre: Update to 5.1.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.12.
(%linux-libre-hash): Update hash.
 2019-06-21 04:35:26 -04:00
Mark H Weaver
5e9452a41d
gnu: linux-libre@4.19: Update to 4.19.53. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.53.
(%linux-libre-4.19-hash): Update hash.
 2019-06-21 04:34:41 -04:00
Mark H Weaver
16854b97ee
gnu: linux-libre@4.14: Update to 4.14.128. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.128.
(%linux-libre-4.14-hash): Update hash.
 2019-06-21 04:33:39 -04:00
Andreas Enge
468bfd13a0
gnu: ratpoints: Generate position-independent code. 
* gnu/packages/algebra.scm (ratpoints): Add "CCFLAGS=-fPIC" to make flags.
 2019-06-21 09:55:13 +02:00
Andreas Enge
e6eafd4277
gnu: symmetrica: Generate position-independent code. 
* gnu/packages/algebra.scm (symmetrica): Add -fPIC compiler flag.
 2019-06-21 09:49:57 +02:00
Andreas Enge
c68ec87ca7
gnu: iml: Enable shared library. 
* gnu/packages/algebra.scm (iml): Add configure flag --enable-shared.
 2019-06-21 09:33:30 +02:00
Andreas Enge
fedb9571eb
gnu: Add lcalc. 
* gnu/packages/sagemath.scm (lcalc): New variable.
* gnu/packages/patches/lcalc-default-parameters-1.patch,
gnu/packages/patches/lcalc-default-parameters-2.patch,
gnu/packages/patches/lcalc-lcommon-h.patch,
gnu/packages/patches/lcalc-using-namespace-std.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register patches.
 2019-06-21 09:28:07 +02:00
Andreas Enge
88f913e8ad
gnu: lrcalc: Add a patch for identifying include files. 
* gnu/packages/patches/lrcalc-includes.patch: New file.
* gnu/packages/algebra.scm (lrcalc): Use patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2019-06-21 09:28:07 +02:00
Paul Garlick
2c12be76cd
gnu: python-mpi4py: Update to 3.0.2. 
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-06-21 09:04:37 +02:00
Marius Bakke
9a2e5fe5fd
gnu: ungoogled-chromium: Disable parallel build. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set
  #:parallel-build? #f.  Adjust 'build' phase to account for it.
 2019-06-20 22:49:32 +02:00
Marius Bakke
0605d939a9
gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]. 
* gnu/packages/samba.scm (samba): Update to 4.10.5.
 2019-06-20 22:49:32 +02:00
Marius Bakke
cee835897b
gnu: ungoogled-chromium: Update to 75.0.3770.100-0.5d8abc3. 
* gnu/packages/chromium.scm (%chromium-version): Set to 75.0.3770.100.
(%chromium-origin): Update hash.
 2019-06-20 22:49:32 +02:00
Marius Bakke
e4386b334a
gnu: openh264: Update to 2.0.0. 
* gnu/packages/video.scm (openh264): Update to 2.0.0.
[source](uri): Adjust file name.
 2019-06-20 22:49:32 +02:00
Alex Griffin
3df7b15e6c
gnu: ungoogled-chromium: Install icons. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Install icons.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-06-20 22:49:32 +02:00
Marius Bakke
b549a05353
gnu: Use HTTPS for sphinx-doc.org. 
* gnu/packages/sphinx.scm (python-sphinx,
python-sphinxcontrib-websupport)[home-page]: Use HTTPS.
 2019-06-20 22:49:31 +02:00
Marius Bakke
bd9d72067e
gnu: python-unidecode: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.0.
 2019-06-20 22:49:31 +02:00
Marius Bakke
377bd155ea
gnu: dbus: Fix CVE-2019-12749. 
* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus/fixed): New variable.
 2019-06-20 22:49:31 +02:00
Ricardo Wurmus
28618b05f0
gnu: pigx-rnaseq: Update to 0.0.7. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7.
[inputs]: Add coreutils and sed.
 2019-06-20 22:29:43 +02:00
Giovanni Biscuolo
78407a27cf
licenses: Add Historical Permission Notice and Disclaimer license 
* gnu/licenses.scm (hpnd): New variable.
 2019-06-20 18:24:49 +02:00
Andreas Enge
eacf29835d
gnu: Add iml. 
* gnu/packages/algebra.scm (iml): New variable.
 2019-06-20 17:36:39 +02:00
Andreas Enge
264334716f
gnu: Add ppl. 
* gnu/packages/maths.scm (ppl): New variable.
 2019-06-20 16:46:37 +02:00
Kristofer Buffington
ace8e269a4
services: opensmtpd: Extend the PAM service. 
* gnu/services/mail.scm (%opensmtpd-pam-services): New variable.
(opensmtpd-service-type)[extensions]: Add it, extending
PAM-ROOT-SERVICE-TYPE.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-20 15:54:51 +02:00
Ricardo Wurmus
30adfd3600
gnu: ngs-sdk: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
 2019-06-20 14:33:57 +02:00
Ricardo Wurmus
20874b7044
gnu: sra-tools: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
 2019-06-20 14:33:57 +02:00
Ricardo Wurmus
7cb44fb571
gnu: ncbi-vdb: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
 2019-06-20 14:33:57 +02:00
Robert Vollmert
b46a9b9a5e
import: hackage: Add two expected failing test cases. 
This adds failing test cases for two hackage import bugs:
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25138
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=35743

* tests/hackage.scm: Make comment style consistent. Add two
cabal parsing tests, marked as expected failures.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-20 14:07:01 +02:00
Robert Vollmert
3149c00264
utils: canonical-newline-port: Fix handling of carriage return at buffer end. 
Prior to this change the added test fails for me locally at byte
1024. It might depend on some default buffer sizes.

Fixes <https://bugs.gnu.org/35863>.

* tests/utils.scm ("canonical-newline-port-1024"): Add test.
* guix/utils.scm (canonical-newline-port): Correct comments on CR/LF.
Remove CR even when they're at the end of the buffer.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-20 14:07:01 +02:00
Ludovic Courtès
c050f18700
gnu: guile: Add 2.2.5. 
* gnu/packages/guile.scm (guile-2.2.5): New variable.
 2019-06-20 14:07:01 +02:00
Ricardo Wurmus
becb9cbfe1
gnu: python-jupyter-console: Update to 6.0.0. 
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0.
[arguments]: Enable tests.
[propagated-inputs]: Replace python-prompt-toolkit-1 with
python-prompt-toolkit.
 2019-06-20 13:14:16 +02:00
Ricardo Wurmus
8e590c8153
gnu: python2-jupyter-console: Split from python-jupyter-console. 
* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without
package-with-python2.
 2019-06-20 13:14:16 +02:00