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Author SHA1 Message Date
Jakub Kądziołka c5e879cdbb
gnu: crates-io: Remove minor versions from some package names.
* gnu/packages/crates-io.scm
(rust-termcolor-1.0): Rename to rust-termcolor-1.
(rust-humantime-1.3): Rename to rust-humantime-1.
(rust-num-cpus-1.11): Rename to rust-num-cpus-1.
(rust-signal-hook-registry-1.2): Rename to rust-signal-hook-registry-1.
2020-06-25 02:55:12 +02:00
Jakub Kądziołka 24973fc550
gnu: Remove rust-num-cpus-1.10.
* gnu/packages/rust-apps.scm (ripgrep)[arguments]: Replace rust-num-cpus-1.10 with 1.11.
* gnu/packages/crates-io.scm
  (rust-crossbeam-channel-0.4, rust-crossbeam-channel-0.3,
  rust-futures-executor-preview-0.3, rust-hyper-0.12,
  rust-jobserver-0.1, rust-tokio-0.2)[arguments]: Likewise.
  (rust-gimli-0.18, rust-tokio-core-0.1,
  rust-tokio-io-pool-0.1, rust-tokio-reactor-0.1)[arguments]: Likewise; don't skip build.
  (rust-tokio-0.1): Don't skip build. Replace rust-num-cpus-1.10 with 1.11,
  rust-env-logger-0.6 with 0.5.
  (rust-tokio-threadpool-0.1)[arguments]: Don't skip build. Replace
  rust-num-cpus-1.10 with 1.11, rust-rand-0.4 with 0.6,
  rust-env-logger-0.6 with 0.5. Add rust-lazy-static-1.
  (rust-num-cpus-1.10): Remove variable.
2020-06-25 02:55:12 +02:00
Jakub Kądziołka 31890a3783
gnu: rust-rayon-1: Update to 1.3.1.
* gnu/packages/crates-io.scm (rust-rayon-1): Update to 1.3.1.
  [arguments]: Remove rust-doc-comment-0.3. Add rust-autocfg-1.0. Don't
  skip build.
2020-06-25 02:55:12 +02:00
Jakub Kądziołka 1a629f0076
gnu: rust-rayon-core-1: Update to 1.7.1.
* gnu/packages/crates-io.scm (rust-rayon-core-1): Update to 1.7.1.
  [arguments]: Don't skip build. Replace rust-num-cpus-1.10 with 1.11.
  Disable tests.
2020-06-25 02:55:12 +02:00
Jakub Kądziołka 8d26b41290
gnu: Remove rust-arc-swap-0.3.
* gnu/packages/crates-io.scm (rust-arc-swap-0.3): Remove variable.
2020-06-25 02:55:11 +02:00
Jakub Kądziołka 7bb8e47926
gnu: Remove rust-signal-hook-registry-1.0.
* gnu/packages/crates-io.scm (rust-signal-hook-registry-1.0): Remove
  variable.
2020-06-25 02:55:11 +02:00
Jakub Kądziołka f8e0184ace
gnu: rust-grep-0.2: Update to 0.2.7.
* gnu/packages/crates-io.scm (rust-grep-0.2): Update to 0.2.7.
2020-06-25 02:55:11 +02:00
Jakub Kądziołka 5d07e23d61
gnu: rust-pcre2-0.2: Update to 0.2.3.
* gnu/packages/crates-io.scm (rust-pcre2-0.2): Update to 0.2.3.
[cargo-inputs]: Replace rust-thread-local-0.3 with 1.0.
2020-06-25 02:55:11 +02:00
Jakub Kądziołka 9ce795a7d6
gnu: rust-grep-pcre2-0.1: Update to 0.1.4.
* gnu/packages/crates-io.scm (rust-grep-pcre2-0.1): Update to 0.1.4.
2020-06-25 02:55:11 +02:00
Jakub Kądziołka 187c232f18
gnu: rust-grep-cli-0.1: Update to 0.1.5.
* gnu/packages/crates-io.scm (rust-grep-cli-0.1): Update to 0.1.5.
[arguments]: Don't skip build.
2020-06-25 02:55:11 +02:00
Jakub Kądziołka 52069595e6
gnu: rust-grep-printer-0.1: Update to 0.1.5.
* gnu/packages/crates-io.scm (rust-grep-printer-0.1): Update to 0.1.5.
  [arguments]: Don't skip build. Replace rust-base64-0.10 with 0.12.
2020-06-25 02:55:10 +02:00
Jakub Kądziołka f03e4b73ff
gnu: Add rust-base64-0.12.
* gnu/packages/crates-io.scm (rust-base64-0.12): New variable.
  (rust-base64-0.11): Inherit from rust-base64-0.12.
2020-06-25 02:55:10 +02:00
Jakub Kądziołka ab0479317e
gnu: rust-grep-searcher-0.1: Update to 0.1.7.
* gnu/packages/crates-io.scm (rust-grep-searcher-0.1): Update to 0.1.7.
  [arguments]: Don't skip build. Replace rust-bytecount-0.5 with 0.6.
2020-06-25 02:55:10 +02:00
Jakub Kądziołka 6013bcfbff
gnu: Add rust-bytecount-0.6.
* gnu/packages/crates-io.scm (rust-bytecount-0.6): New variable.
  (rust-bytecount-0.5): Inherit from rust-bytecount-0.6. Replace
  rust-rand-0.4 with 0.6 (the former only worked due to transitive
  dependencies and "the semver trick" [0]).
  (rust-bytecount-0.4): Inherit from rust-bytecount-0.5.

[0]: https://github.com/dtolnay/semver-trick
2020-06-25 02:55:10 +02:00
Jakub Kądziołka aac2184eba
gnu: rust-aho-corasick-0.7: Update to 0.7.13.
* gnu/packages/crates-io.scm (rust-aho-corasick-0.7): Update to 0.7.13.
2020-06-25 02:55:10 +02:00
Jakub Kądziołka 3472ec0257
gnu: rust-grep-regex-0.1: Update to 0.1.8.
* gnu/packages/crates-io.scm (rust-grep-regex-0.1): Update to 0.1.8.
  [cargo-inputs]: Add rust-bstr-0.2. Replace rust-thread-local-0.3 with 1.0.
  Remove rust-utf8-ranges-1.0.
2020-06-25 02:55:10 +02:00
Jakub Kądziołka 1aabcf9222
gnu: rust-grep-matcher-0.1: Update to 0.1.4.
* gnu/packages/crates-io.scm (rust-grep-matcher-0.1): Update to 0.1.4.
2020-06-25 02:55:09 +02:00
Jakub Kądziołka 83b5d1fa75
gnu: rust-regex-1: Update to 1.3.9.
* gnu/packages/crates-io.scm (rust-regex-1): Update to 1.3.9.
  [cargo-development-inputs]: Remove rust-doc-comment-0.3.
2020-06-25 02:55:09 +02:00
Jakub Kądziołka a9680dbd76
gnu: rust-regex-syntax-0.6: Update to 0.6.18.
* gnu/packages/crates-io.scm (rust-regex-syntax-0.6): Update to 0.6.18.
2020-06-25 02:55:09 +02:00
Jakub Kądziołka adf9648f2e
gnu: rust-ignore-0.4: Update to 0.4.16.
* gnu/packages/crates-io.scm (rust-ignore-0.4): Update to 0.4.16.
  [arguments]: Make rust-crossbeam-channel-0.4 a development input.
  Add rust-crossbeam-utils-0.7 to inputs.
2020-06-25 02:55:09 +02:00
Jakub Kądziołka f9b251f005
gnu: rust-crossbeam-utils-0.7: Fix build.
* gnu/packages/crates-io.scm (rust-crossbeam-utils-0.7)[arguments]:
  Replace rust-autocfg-0.1 with 1.0. Don't skip build.
2020-06-25 02:55:09 +02:00
Jakub Kądziołka dca62c0457
gnu: rust-globset-0.4: Update to 0.4.5.
* gnu/packages/crates-io.scm (rust-globset-0.4): Update to 0.4.5.
  [cargo-inputs]: Add rust-serde-1.0.
  [cargo-development-inputs]: Add rust-lazy-static-1, rust-serde-json-1.0.
2020-06-25 02:55:09 +02:00
Ludovic Courtès a2991de0f4
gnu: guix: Build with Guile 3.0.4.
Since Guile 3.0.4 bytecode is not readable by 3.0.2, build the
dependents of 'guix' with 3.0.4 as well.

* gnu/packages/package-management.scm (guix)[inputs, native-inputs]: Use
GUILE-3.0-LATEST.
(gwl, guix-jupyter): Likewise.
* gnu/packages/web.scm (hpcguix-web): Likewise.
* gnu/packages/ci.scm (cuirass): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-guix): Likewise.
2020-06-25 01:20:31 +02:00
Ludovic Courtès 9e91f8623f
gnu: guile: Update to 3.0.4.
* gnu/packages/guile.scm (guile-3.0.3): Rename to...
(guile-3.0-latest): ... this.  Update to 3.0.4.
(guile-3.0/libgc-7): Adjust accordingly.
2020-06-25 01:20:31 +02:00
Ludovic Courtès 1ad332b367
gnu: glib: Hide 'zip' binding from SRFI-1.
* gnu/packages/glib.scm: Hide 'zip' from (srfi srfi-1).
2020-06-25 01:20:31 +02:00
Jakub Kądziołka 5adaf17bb0
gnu: sameboy: Update to 0.13.3.
* gnu/packages/emulators.scm (sameboy): Update to 0.13.3.
2020-06-25 00:21:30 +02:00
Ryan Prior fb77ed2c49
gnu: Add sideload.
* gnu/packages/pantheon.scm (sideload): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-24 22:10:59 +02:00
Vinicius Monego 657f8535aa
gnu: Add gmic.
* gnu/packages/image-processing.scm (gmic): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-24 22:10:59 +02:00
Vinicius Monego c53d529f1d
gnu: Add photoflare.
* gnu/packages/photo.scm (photoflare): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-24 22:10:58 +02:00
Marius Bakke cdf6a11880
gnu: python-on-guile: Update to 1.2.3.5.
* gnu/packages/guile-xyz.scm (python-on-guile): Update to 1.2.3.5.
2020-06-24 22:10:58 +02:00
Marius Bakke af91d13385
gnu: cURL: Replace with 7.71.0 [fixes CVE-2020-8169, CVE-2020-8177].
* gnu/packages/curl.scm (curl-7.71.0): New variable.
(curl)[replacement]: New field.
2020-06-24 22:10:58 +02:00
Maxim Cournoyer f9cb49d761
gnu: Add emacs-ob-erlang.
* gnu/packages/emacs-xyz.scm (emacs-ob-erlang): New variable.
2020-06-24 16:03:20 -04:00
Jakub Kądziołka bf2ab0a078
gnu: fd: Update to 8.1.1.
* gnu/packages/rust-apps.scm (fd): Update to 8.1.1.
  [cargo-inputs]: Add rust-anyhow-1.0, rust-dirs-2.0, rust-users-0.10.
  Replace rust-humantime-1.3 with 2, rust-lscolors-0.6 with 0.7,
  rust-num-cpus-1.10 with 1.11.
2020-06-24 21:14:34 +02:00
Jakub Kądziołka eb9b378604
gnu: Add rust-lscolors-0.7.
* gnu/packages/crates-io.scm (rust-lscolors-0.7): New variable.
(rust-lscolors-0.6): Inherit from rust-lscolors-0.7.
2020-06-24 21:14:33 +02:00
Jakub Kądziołka 3e838a21fe
gnu: Add rust-users-0.10.
* gnu/packages/crates-io.scm (rust-users-0.10): New variable.
  (rust-users-0.9): Inherit from rust-users-0.10.
2020-06-24 21:14:33 +02:00
Jakub Kądziołka c434a3fbc0
gnu: Add rust-humantime-2.
* gnu/packages/crates-io.scm (rust-humantime-2): New variable.
  (rust-humantime-1.3): Inherit from rust-humantime-2.
2020-06-24 21:14:33 +02:00
Jakub Kądziołka 4f5c689d10
gnu: Remove rust-humantime-1.2.
* gnu/packages/crates-io.scm (rust-humantime-1.2): Remove variable.
(rust-env-logger-0.5, rust-env-logger-0.6)[arguments]: Replace
rust-humantime-1.2 with 1.3. Don't skip build.
2020-06-24 21:14:32 +02:00
Nicolas Goaziou af0307a099
gnu: symengine: Fix indentation.
* gnu/packages/algebra.scm (symengine): Fix indentation and apply small
cosmetic fixes.
2020-06-24 19:46:55 +02:00
Vinicius Monego 49a2a477c9
gnu: Add python-symengine.
* gnu/packages/python-xyz.scm (python-symengine): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-06-24 19:39:47 +02:00
Vinicius Monego d0337a226b
gnu: Add symengine.
* gnu/packages/algebra.scm (symengine): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-06-24 19:38:32 +02:00
Oleg Pykhalov 48eeee818a
gnu: sssd: Fix build.
* gnu/packages/patches/sssd-fix-samba.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
* gnu/packages/sssd.scm (sssd)[source]: Add this.
2020-06-24 18:40:47 +03:00
Ricardo Wurmus f39ef3aef9
gnu: r-fpc: Update to 2.2-6.
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-6.
2020-06-24 17:23:49 +02:00
Ricardo Wurmus 2bceb47cc8
gnu: r-dt: Update to 0.14.
* gnu/packages/statistics.scm (r-dt): Update to 0.14.
2020-06-24 17:23:49 +02:00
Ricardo Wurmus c496c754af
gnu: r-segmented: Update to 1.2-0.
* gnu/packages/statistics.scm (r-segmented): Update to 1.2-0.
2020-06-24 17:23:49 +02:00
Ricardo Wurmus d8c78ea647
gnu: r-knitr: Update to 1.29.
* gnu/packages/statistics.scm (r-knitr): Update to 1.29.
2020-06-24 17:23:49 +02:00
Ricardo Wurmus 7fe6a2f00b
gnu: r-patchwork: Update to 1.0.1.
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.1.
2020-06-24 17:23:49 +02:00
Ricardo Wurmus 30d4e2cb02
gnu: r-ggforce: Update to 0.3.2.
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.2.
2020-06-24 17:23:48 +02:00
Ricardo Wurmus 0ba8408e7c
gnu: r-bookdown: Update to 0.20.
* gnu/packages/cran.scm (r-bookdown): Update to 0.20.
2020-06-24 17:23:48 +02:00
Ricardo Wurmus 89950dd439
gnu: r-docopt: Update to 0.7.1.
* gnu/packages/cran.scm (r-docopt): Update to 0.7.1.
2020-06-24 17:23:48 +02:00
Ricardo Wurmus 55df96b8a8
gnu: r-magick: Update to 2.4.0.
* gnu/packages/cran.scm (r-magick): Update to 2.4.0.
[native-inputs]: Add r-knitr.
2020-06-24 17:23:48 +02:00
Ricardo Wurmus 01d4a5c342
gnu: r-recipes: Update to 0.1.13.
* gnu/packages/cran.scm (r-recipes): Update to 0.1.13.
[propagated-inputs]: Add r-lifecycle.
2020-06-24 17:23:48 +02:00
Ricardo Wurmus 7336ded499
gnu: r-gower: Update to 0.2.2.
* gnu/packages/cran.scm (r-gower): Update to 0.2.2.
2020-06-24 17:23:48 +02:00
Efraim Flashner d739b8d8b8
gnu: libsignal-protocol-c: Don't use unstable tarball.
* gnu/packages/messaging.scm (libsignal-protocol-c)[source]: Download
using git-fetch.
2020-06-24 10:41:50 +03:00
Efraim Flashner 2d84ef328c
gnu: ocaml4.07-piqi: Don't use unstable tarball.
* gnu/packages/ocaml.scm (ocaml4.07-piqi)[source]: Download using
git-fetch.
[arguments]: Add custom phase to make files writable.
2020-06-24 10:35:56 +03:00
Efraim Flashner d5c0b3fa7e
gnu: jmtpfs: Don't use unstable tarball.
* gnu/packages/linux.scm (jmtpfs)[source]: Download using git-fetch.
2020-06-24 10:29:54 +03:00
Efraim Flashner 8de377564e
gnu: pflask: Don't use unstable tarball.
* gnu/packages/linux.scm (pflask)[source]: Download using git-fetch.
2020-06-24 10:27:58 +03:00
Efraim Flashner cfaf5bccb9
gnu: procenv: Don't use unstable tarball.
* gnu/packages/linux.scm (procenv)[source]: Download using git-fetch.
2020-06-24 10:26:20 +03:00
Efraim Flashner eb4cfec276
gnu: ddate: Don't use unstable tarball.
* gnu/packages/linux.scm (ddate)[source]: Download using git-fetch.
2020-06-24 10:23:51 +03:00
Efraim Flashner 2c9cb2f0a1
gnu: java-usb4java: Don't use unstable tarball.
* gnu/packages/libusb.scm (java-usb4java)[source]: Download using
git-fetch.
2020-06-24 10:19:15 +03:00
Efraim Flashner dcd62e8b8d
gnu: antlr3-3.3: Don't propagate antlr3-3.1.
* gnu/packages/java.scm (antlr3-3.3)[propagated-inputs]: Remove antlr3-3.1.
2020-06-24 09:37:10 +03:00
Efraim Flashner 397b9c887c
gnu: python2-zipp-bootstrap: Add missing name field.
* gnu/packages/python-compression.scm (python2-zipp-bootstrap)[name]:
Don't inherit from python2-zipp.
2020-06-24 08:19:43 +03:00
Marius Bakke 4f33bf5709
gnu: python-on-guile: Do not propagate dependencies.
* gnu/packages/guile-xyz.scm (python-on-guile)[propagated-inputs]: Move
everything to ...
[inputs] ... here.
2020-06-24 01:04:15 +02:00
Marius Bakke 862d6a9173
gnu: python-on-guile: Wrap with own Guile modules.
* gnu/packages/guile-xyz.scm (python-on-guile)[arguments]: Add the output
modules to the wrapper.
2020-06-24 01:04:15 +02:00
Marius Bakke ac94458485
gnu: python-on-guile: Update to 1.2.3.4.
* gnu/packages/guile-xyz.scm (python-on-guile): Update to 1.2.3.
[source]: Download from <https://gitlab.com/python-on-guile/python-on-guile>.
[inputs]: Change from GUILE-2.2 to GUILE-3.0.
[arguments]: Add phase augment-GUILE_LOAD_PATH.
2020-06-24 01:04:15 +02:00
Marius Bakke 09f0bc87a9
gnu: guile-persist: Update to 1.2.3.
* gnu/packages/guile-xyz.scm (guile-persist): Update to 1.2.3.
[source](modules, snippet): Remove.
[inputs]: Change from GUILE-2.2 to GUILE-3.0.
2020-06-24 01:04:15 +02:00
Marius Bakke 3a71dac02e
gnu: guile-stis-parser: Update to 1.2.4.1.
* gnu/packages/guile-xyz.scm (guile-stis-parser): Update to 1.2.4.1.
[arguments]: Remove obsolete phase.
[inputs]: Change from GUILE-2.2 to GUILE-3.0.
2020-06-24 01:04:15 +02:00
Ryan Prior aeefe5317d
gnu: Add v.
* gnu/packages/vlang.scm: New file.
* gnu/packages/vlang.scm (v): New variable.
* gnu/local.mk: Add vlang.scm.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-23 23:52:24 +02:00
Robin Templeton 753d75d40b
gnu: flatpak: Fix xdg-dbus-proxy configure flag.
* gnu/packages/package-management.scm (flatpak) [arguments]: Pass the full
"xdg-dbus-proxy" program path to the "--with-system-dbus-proxy" configure
flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-23 23:39:42 +02:00
Ricardo Wurmus 501d89d707
gnu: python-pywavelets: Update to 1.1.1.
* gnu/packages/python-xyz.scm (python-pywavelets): Update to 1.1.1.
[arguments]: Update "check" phase.
[native-inputs]: Replace python-nose with python-pytest.
2020-06-23 23:15:55 +02:00
Ricardo Wurmus 88e0101b61
gnu: Add python-imageio.
* gnu/packages/python-xyz.scm (python-imageio): New variable.
2020-06-23 23:15:55 +02:00
Ricardo Wurmus 6bd9e0d501
gnu: Add python-lfdfiles.
* gnu/packages/python-xyz.scm (python-lfdfiles): New variable.
2020-06-23 23:15:55 +02:00
Ricardo Wurmus 09f527827a
gnu: Add python-tifffile.
* gnu/packages/python-xyz.scm (python-tifffile): New variable.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 978d11f96e
gnu: Add python-roifile.
* gnu/packages/python-xyz.scm (python-roifile): New variable.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 5db8ba1f49
gnu: Add python-msgpack-numpy.
* gnu/packages/python-science.scm (python-msgpack-numpy): New variable.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 4be49afabd
gnu: python-scikit-image: Update to 0.17.2.
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.17.2.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 83c116563d
gnu: python-gridmap: Update to 0.14.0.
* gnu/packages/python-xyz.scm (python-gridmap): Update to 0.14.0.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus e8f2ddbb23
gnu: Add python-progressbar2.
* gnu/packages/python-xyz.scm (python-progressbar2): New variable.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 2537a7bf26
gnu: python-pycodestyle: Update to 2.6.0.
* gnu/packages/python-xyz.scm (python-pycodestyle): Update to 2.6.0.
[arguments]: Replace check phase.
[native-inputs]: Add python-pytest.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 4e6387846b
gnu: python-pyflakes: Update to 2.2.0.
* gnu/packages/python-xyz.scm (python-pyflakes): Update to 2.2.0.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 358dda42e7
gnu: python-flake8: Update to 3.8.3.
* gnu/packages/python-xyz.scm (python-flake8): Update to 3.8.3.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus 57be09b207
gnu: python-utils: Update to 2.4.0.
* gnu/packages/python-xyz.scm (python-utils): Update to 2.4.0.
[arguments]: Replace check phase.
2020-06-23 23:15:54 +02:00
Ricardo Wurmus a17e1b9e11
gnu: python-pytest-flakes: Update to 4.0.0.
* gnu/packages/check.scm (python-pytest-flakes): Update to 4.0.0.
[arguments]: Skip broken test.
2020-06-23 23:15:54 +02:00
Marius Bakke a864d40711
gnu: mpv: Use deterministic ordering of shared library dependencies.
Fixes <https://bugs.gnu.org/42025>.
Reported by Msavoritias <marinus.savoritias@disroot.org>.

* gnu/packages/video.scm (mpv)[arguments]: Add phase 'build-reproducibly'.
2020-06-23 22:24:38 +02:00
Marius Bakke e6c2cec217
gnu: ungoogled-chromium: Update to 83.0.4103.116-0.f08ce8b [fixes CVE-2020-6509].
* gnu/packages/chromium.scm (%chromium-version): Set to 83.0.4103.116.
(%ungoogled-origin): Update hash.
2020-06-23 22:24:38 +02:00
Marius Bakke b87840f0d4
gnu: motion: Build with the latest ffmpeg.
* gnu/packages/video.scm (motion)[inputs]: Change from FFMPEG-3.4 to FFMPEG.
2020-06-23 22:24:32 +02:00
Efraim Flashner aa246eaa6b
gnu: openmw: Don't use unstable tarball.
* gnu/packages/game-development.scm (openmw)[source]: Download using
git-fetch.
2020-06-23 19:17:33 +03:00
Efraim Flashner 9b03299544
gnu: go-1.13: Target aarch64-linux for aarch64-linux.
Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=34872>.

* gnu/packages/golang.scm (go-1.13)[arguments]: Set system to
aarch64-linux when building for aarch64-linux. Adjust 'prebuild phase
to skip tests which fail on aarch64-linux.
2020-06-23 19:17:33 +03:00
Efraim Flashner 87e1a1979b
gnu: go-github-com-rcrowley-go-metrics: Skip tests on aarch64-linux.
* gnu/packages/syncthing.scm (go-github-com-rcrowley-go-metrics)
[arguments]: Skip tests when building on or for aarch64-linux.
2020-06-23 19:17:32 +03:00
Kei Kebreau 362ae4313e
gnu: nml: Update to 0.5.2.
* gnu/packages/game-development.scm (nml): Update to 0.5.2.
[source]: Fetch from pypi.
[arguments]: Remove 'fix-pillow' phase and disable tests.
[home-page]: Update URL.
2020-06-23 10:23:00 -04:00
Efraim Flashner 6562a3883f
gnu: pidentd: Don't use unstable tarball.
* gnu/packages/networking.scm (pidentd)[source]: Download using
git-fetch.
2020-06-23 17:12:58 +03:00
Efraim Flashner 59bcda1e8c
gnu: nzbget: Don't use unstable tarball.
* gnu/packages/networking.scm (nzbget)[source]: Download using release
source tarball.
2020-06-23 17:10:34 +03:00
Efraim Flashner a2a7cc9bfc
gnu: lightgbm: Don't use unstable tarball.
* gnu/packages/machine-learning.scm (lightgbm)[source]: Download using
git-fetch.
[arguments]: Adjust custom 'check phase accordingly.
2020-06-23 17:02:04 +03:00
Efraim Flashner 92ecee94dd
gnu: sonata: Don't use unstable tarball.
* gnu/packages/mpd.scm (sonata)[source]: Download using git-fetch.
2020-06-23 16:46:06 +03:00
Efraim Flashner fffe9a1529
gnu: sbcl-md5: Don't use unstable tarball.
* gnu/packages/lisp-xyz.scm (sbcl-md5)[source]: Download using git-fetch.
2020-06-23 16:34:34 +03:00
Efraim Flashner b244722879
gnu: nototools: Don't use unstable tarball.
* gnu/packages/fontutils.scm (nototools)[source]: Download using
git-fetch.
2020-06-23 16:13:41 +03:00
Efraim Flashner 405b9ba048
gnu: fntsample: Don't use unstable tarball.
* gnu/packages/fontutils.scm (fntsample)[source]: Download using
git-fetch.
2020-06-23 16:08:15 +03:00
Efraim Flashner de0f36f0aa
gnu: miniasm: Make sure all phases return #t.
* gnu/packages/bioinformatics.scm (miniasm)[arguments]: Make custom
'install phase return #t.
2020-06-23 16:04:51 +03:00
Efraim Flashner 896f18210b
gnu: miniasm: Don't use unstable tarball.
* gnu/packages/bioinformatics.scm (miniasm)[source]: Download using
git-fetch.
2020-06-23 16:04:04 +03:00
Efraim Flashner b9e1fc2f04
gnu: stumpwm-contrib: Add a source file-name.
* gnu/packages/wm.scm (stumpwm-contrib)[source]: Add file-name field.
2020-06-23 15:56:50 +03:00
Efraim Flashner 09c2fb1238
gnu: libfreenect: Add a source file-name.
* gnu/packages/openkinect.scm (libfreenect)[source]: Add file-name field.
2020-06-23 15:55:27 +03:00
Efraim Flashner 352e09a5b0
gnu: xaos: Add a source file-name.
* gnu/packages/maths.scm (xaos)[source]: Add file-name field.
2020-06-23 15:54:38 +03:00
Efraim Flashner b5698f5b38
gnu: java-picocli: Use a source file-name.
* gnu/packages/java.scm (java-picocli)[source]: Add a file-name field.
2020-06-23 15:53:54 +03:00
Martin Becze 1ed87c010e
gnu: Add go-github-com-emersion-go-imap-idle.
* gnu/packages/golang.scm (go-github-com-emersion-go-imap-idle): New
variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-23 15:11:09 +03:00
Martin Becze 9ba67ef0ea
gnu: Add go-github-com-emersion-go-sasl.
* gnu/packages/golang.scm (go-github-com-emersion-go-sasl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-23 15:11:08 +03:00
Martin Becze 48ee9aa461
gnu: Add go-github-com-emersion-go-imap.
* gnu/packages/golang.scm (go-github-com-emersion-go-imap): New
variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-23 15:11:08 +03:00
Martin Becze bffb8f3c5f
gnu: Add go-github-com-ddevault-go-libvterm.
* gnu/packages/golang.scm (go-github-com-ddevault-go-libvterm): New
variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-23 15:11:08 +03:00
Martin Becze d6bae2b7bc
gnu: Add go-github-com-danwakefield-fnmatch.
* gnu/packages/golang.scm (go-github-com-danwakefield-fnmatch): New
variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-23 15:11:08 +03:00
Ricardo Wurmus c03cefc3d8
gnu: Add r-kmer.
* gnu/packages/cran.scm (r-kmer): New variable.

Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
2020-06-23 13:43:12 +02:00
Ricardo Wurmus f9b3718568
gnu: Add r-phylogram.
* gnu/packages/cran.scm (r-phylogram): New variable.

Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
2020-06-23 13:43:12 +02:00
Ricardo Wurmus 755733a3fe
gnu: Add r-fourcseq.
* gnu/packages/cran.scm (r-fourcseq): New variable.

Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
2020-06-23 13:43:12 +02:00
Ricardo Wurmus c261a7b39a
gnu: Add r-lsd.
* gnu/packages/cran.scm (r-lsd): New variable.

Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
2020-06-23 13:43:12 +02:00
Mathieu Othacehe 380c3e459b
gnu: cuirass: Update to 0.0.1-34.10b16e.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-34.10b16e.
2020-06-23 11:09:24 +02:00
Mathieu Othacehe c29bb909d2
gnu: fakeroot: Do not assume "sed" and "cut" to be available.
* gnu/packages/linux.scm (fakeroot)[inputs]: Add "sed" and "coreutils",
[arguments]: substitute "sed" and "cut" by their absolute path in fakeroot
script. Rename the associated phase from patch-getopt to patch-script.
2020-06-23 09:51:14 +02:00
Mark H Weaver 42a2ee1f92
gnu: linux-libre: Update to 5.4.48.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.48.
(linux-libre-5.4-pristine-source): Update hash.
2020-06-22 21:02:33 -04:00
Mark H Weaver 83cbfa2091
gnu: linux-libre@5.7: Update to 5.7.5.
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.5.
(linux-libre-5.7-pristine-source): Update hash.
2020-06-22 21:02:00 -04:00
Mark H Weaver d460e737a8
gnu: linux-libre@4.19: Update to 4.19.129.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.129.
(linux-libre-4.19-pristine-source): Update hash.
2020-06-22 21:00:50 -04:00
Jakub Kądziołka 2dab855bb1
gnu: sequoia: Update to 0.17.0.
* gnu/packages/sequoia.scm (sequoia): Update to 0.17.0.
  [cargo-inputs]: Add rust-structopt-0.3.
  [phases](unpin-deps): New phase.
2020-06-23 01:42:02 +02:00
Vinicius Monego 62115b7ab7
gnu: liferea: Update to 1.12.8.
* gnu/packages/syndication.scm (liferea): Update to 1.12.8.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:55 +02:00
Marius Bakke 0752dabb40
gnu: mlt: Build with the latest ffmpeg.
* gnu/packages/video.scm (mlt)[inputs]: Change from FFMPEG-3.4 to FFMPEG.
2020-06-22 23:52:55 +02:00
Vinicius Monego d6817e0086
gnu: mlt: Update to 6.20.0.
* gnu/packages/video.scm (mlt): Update to 6.20.0.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:55 +02:00
Vinicius Monego 9305dfb9fd
gnu: darktable: Update to 3.0.2.
* gnu/packages/photo.scm (darktable): Update to 3.0.2.
[arguments]: Compile with clang.  Wrap GSETTINGS_SCHEMAS_DIR.
[license]: Add license information for Rawspeed.
[native-inputs]: Add clang, desktop-file-utils, glib, gobject-instrospection,
llvm, and po4a.  Reorder alphabetically.
[inputs]: Add colord-gtk, cups, graphicsmagick, gsettings-desktop-schemas,
iso-codes, libsecret, lua, openjpeg, and osm-gps-map.  Reorder alphabetically.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:55 +02:00
Simon South a212006048
gnu: jamvm: Fix to work with current gcc and glibc.
* gnu/packages/java.scm (jamvm)[source]: Add patch.
(jamvm-1-bootstrap)[native-inputs]: Remove.
* gnu/packages/patches/jamvm-2.0.0-disable-branch-patching.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:55 +02:00
Giacomo Leidi cf66096d51
gnu: template-glib: Update to 3.34.0.
* gnu/packages/glib.scm (template-glib): Update to 3.34.0.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein 3e84503cb2
gnu: Add python-daemux.
* gnu/packages/tmux.scm (python-daemux): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein 3565a30f70
gnu: Add python-libtmux.
* gnu/packages/tmux.scm (python-libtmux): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein 9d0e87f8ed
gnu: Add python-pyfiglet.
* gnu/packages/python-xyz.scm (python-pyfiglet): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein 24297a9a9c
gnu: Add python-flask-restx.
* gnu/packages/python-web.scm (python-flask-restx): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein 85acb5f53d
gnu: Add python-pytest-flask.
* gnu/packages/python-check.scm (python-pytest-flask): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein 857c63fe03
gnu: Add python-pytest-benchmark.
* gnu/packages/python-check.scm (python-pytest-benchmark): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:54 +02:00
Edouard Klein bb7e9ab755
gnu: Add python-py-cpuinfo.
* gnu/packages/python-xyz.scm (python-py-cpuinfo): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-06-22 23:52:53 +02:00
Nicolas Goaziou 68a6070bc3
gnu: Add abe.
* gnu/packages/games.scm (abe): New variable.
2020-06-22 22:06:06 +02:00
Jonathan Brielmaier 5d9540ddcf
gnu: mate: Don't propagate glib:bin.
* gnu/packages/mate.scm (mate)[propagated-inputs]: Remove as the
proper fix arrived from core-updates.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-22 21:28:12 +03:00
Jonathan Brielmaier a2ebd098d7
gnu: mate-common: Update to 1.24.1.
* gnu/packages/mate.scm (mate-common): Update to 1.24.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-22 21:27:38 +03:00
Vinicius Monego bf2ffbcd77
gnu: Add python-pytest-lazy-fixture.
* gnu/packages/check.scm (python-pytest-lazy-fixture): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-22 21:18:40 +03:00
Ricardo Wurmus af02327856
gnu: r-with-tests, r-minimal: Update to 4.0.2.
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.2.
2020-06-22 18:28:52 +02:00
Marius Bakke cf14e67963
gnu: gn: Update to 0.0-1794.eb997b5.
* gnu/packages/build-tools.scm (gn): Update to 0.0-1794.eb997b5.
2020-06-22 17:16:39 +02:00
Marius Bakke 75527eb1cb
gnu: ungoogled-chromium: Update to 83.0.4103.106-0.f08ce8b [security fixes].
This fixes CVE-2020-6465, CVE-2020-6466, CVE-2020-6467, CVE-2020-6468,
CVE-2020-6469, CVE-2020-6470, CVE-2020-6471, CVE-2020-6472, CVE-2020-6473,
CVE-2020-6474, CVE-2020-6475, CVE-2020-6476, CVE-2020-6477, CVE-2020-6478,
CVE-2020-6479, CVE-2020-6480, CVE-2020-6481, CVE-2020-6482, CVE-2020-6483,
CVE-2020-6484, CVE-2020-6485, CVE-2020-6486, CVE-2020-6487, CVE-2020-6488,
CVE-2020-6489, CVE-2020-6490, CVE-2020-6491, CVE-2020-6493, CVE-2020-6494,
CVE-2020-6495, CVE-2020-6496, CVE-2020-6497, and CVE-2020-6498.

* gnu/packages/patches/ungoogled-chromium-system-jsoncpp.patch,
gnu/packages/patches/ungoogled-chromium-system-zlib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 83.
(%chromium-version): Set to 83.0.4103.106.
(%ungoogled-revision): Set to f08ce8b3f1300ef0750b5d6bf967b9cbbfd9a56d.
(%gentoo-revision, %gentoo-patches, %debian-patches): New variables.
(gentoo-patch, debian-patch): New procedures.
(%chromium-origin, %ungoogled-origin): Update hashes.
(ungoogled-chromium-source): Don't apply patches from %DEBIAN-ORIGIN, but take
%GENTOO-PATCHES, %DEBIAN-PATCHES, and the local patch files.
(ungoogled-chromium)[arguments]: Remove "enable_swiftshader=false" from
 #:configure-flags.  Add "icu_use_data_file=false".  Set CFLAGS in phase.
Remove obsolete substitution.  Adjust install phase to install .so files for
ANGLE and Swiftshader.
[native-inputs]: Change from CLANG-9 to CLANG-10.
[inputs]: Replace ICU4C with ICU4C-67.
(ungoogled-chromium/wayland): Remove obsolete substitution.  Add
"ozone_platform_x11=true" in #:configure-flags.
2020-06-22 17:16:39 +02:00
Marius Bakke 8169cc736a
gnu: icu4c: Add 67.1.
* gnu/packages/icu4c.scm (icu4c-67): New public variable.
2020-06-22 17:16:39 +02:00
Marius Bakke acac3b94d7
gnu: ungoogled-chromium: Specify CPE name.
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Add CPE-NAME.
2020-06-22 17:16:39 +02:00
Marius Bakke cafc5f8927
gnu: ungoogled-chromium: Remove non-free file.
* gnu/packages/chromium.scm (ungoogled-chromium-source): Remove (unused) SVG
file that is licensed under a NoDerivatives license.
2020-06-22 17:16:39 +02:00
Marius Bakke 3d5a217d5e
gnu: ungoogled-chromium: Build with ffmpeg@4.2.
Fixes <https://bugs.gnu.org/41987>.
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.

* gnu/packages/video.scm (ffmpeg-4.2): New public variable.
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change from FFMPEG
to FFMPEG-4.2.
2020-06-22 17:16:38 +02:00
Marius Bakke 402d03751c
gnu: ffmpeg: Enable rav1e on x86_64 only.
Fixes <https://bugs.gnu.org/41993>.
Reported by Kurt I <gitlabcanada@runbox.com>.

* gnu/packages/video.scm (ffmpeg)[inputs]: Conditionally add RAV1E.
[arguments]: Adjust #:configure-flags accordingly.
2020-06-22 17:16:38 +02:00
Mathieu Othacehe 0919d6148f
gnu: xl2tpd: Fix build.
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Substitute hardcoded pppd path
instead of trying to set CFLAGS variable.
2020-06-22 16:48:58 +02:00
Pierre Langlois 6e31d6f3c4
gnu: python-plotly: Update to 4.8.1.
But keep version 2.4.1 around for packages that still need it and for python2
support.

* gnu/packages/graph.scm (python-plotly): Update to 4.8.1.
[source]: Use git-fetch so that tests are also included.
[arguments]: Enable tests.
[home-page]: Follow redirect.
(python-plotly-2.4.1): New variable.
(python2-plotly): Inherit from python-plotly-2.4.1.
* gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Depend on
python-plotly-2.4.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-22 15:44:16 +02:00
Pierre Langlois 3417a25156
gnu: Add python-xarray.
From 27ec21904f769c1e8114f767972d9037e1e9f68a Mon Sep 17 00:00:00 2001
From: Pierre Langlois <pierre.langlois@gmx.com>
Date: Thu, 18 Jun 2020 00:58:02 +0200
Subject: [PATCH 4/5] gnu: Add python-xarray.

* gnu/package/python-science.scm (python-xarray): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-22 15:44:14 +02:00
Pierre Langlois 7fd33283df
gnu: Add python-retrying.
* gnu/packages/python-xyz.scm (python-retrying): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-22 15:44:12 +02:00
Pierre Langlois 20b545f768
gnu: python-pandas: Update to 1.0.5.
But also keep version 0.25.3 around for packages requiring an earlier
versions, as well as version 0.24.2 for a version with python2.

* gnu/packages/python-science.scm (python-pandas): Update to 1.0.5.
[arguments]: Adapt 'patch-which phase.  Add new 'prepare-x phase.  Do not
delete tests that depend on "moto", they are skipped automatically.
[propagated-inputs]: Add python-jinja2.
[inputs]: Add xsel and xclip.
[native-inputs]: Add xorg-server-for-tests so we can test clipboard support.
(python-pandas-0.24): New variable.
(python2-pandas): Inherit from python-pandas-0.25.
* gnu/packages/bioinformatics.scm (python-biom-format)[propagated-inputs]:
Switch to python-pandas-0.25.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-22 15:44:08 +02:00
Pierre Langlois 3a79adab41
gnu: deeptools: Deprecate in favor of python-deeptools.
And make sure python-deeptools's tests are running.

* gnu/packages/bioinformatics.scm (python-deeptools): Fetch source using git.
[native-inputs]: Add python-mock and python-nose.
(deeptools): Mark as deprecated.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-22 15:43:59 +02:00
Ludovic Courtès 955caaab26
self: Build with Guile 3.0.3.
* gnu/packages/guile.scm (guile-3.0/libgc-7): Inherit from GUILE-3.0.3.
2020-06-22 15:42:56 +02:00
Pierre Neidhardt a0dccc71a6
gnu: emacs-helm: Update to 3.6.3.
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.6.3.
2020-06-22 15:05:46 +02:00