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Author SHA1 Message Date
Jakub Kądziołka ba65d474d3
gnu: Use rust 1.39 as the default for package builds
* gnu/packages/rust.scm (rust): Point to rust-1.39.
2020-03-29 01:42:38 +01:00
Jakub Kądziołka 44fb8cf841
Merge branch 'master' into staging 2020-03-29 00:38:13 +01:00
Vincent Legoll 62b9ad19e3
gnu: Add wol.
* gnu/packages/networking.scm (wol): New public variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-29 00:02:46 +01:00
Nicolas Goaziou 735a8d997a
gnu: emacs-csv: Use proper Texinfo markup in description.
* gnu/packages/emacs-xyz.scm (emacs-csv)[description]: Use proper Texinfo
markup.
2020-03-28 21:33:16 +01:00
Amin Bandali c2cf286c62
Update email address and Savannah handle for Amin Bandali.
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
2020-03-28 16:30:07 -04:00
Nicolas Goaziou 255fb17b25
gnu: armadillo: Fix typo in description.
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
2020-03-28 21:27:33 +01:00
Marius Bakke 043c3d6499
gnu: KOrganizer: Fix typo in description.
* gnu/packages/kde-pim.scm (korganizer)[description]: clanedaring -> calendaring.
2020-03-28 20:03:50 +01:00
Efraim Flashner 619edce5cd
gnu: youtube-viewer: Add missing comment.
This is a follow-up to 315b98b9eb.

* gnu/packages/video.scm (youtube-viewer)[arguments]: Add comment
explaining why we don't install the gtk3 variant.
2020-03-28 21:07:08 +03:00
Leo Famulari e4257138fe
Revert "gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default."
This commit didn't work:

https://issues.guix.gnu.org/issue/24076#13

This reverts commit c7af9d0b5e.
2020-03-28 11:50:41 -04:00
Alex Griffin 54cf5e2a35
gnu: pagekite: Update to 1.5.0.200327.
* gnu/packages/networking.scm (pagekite): Update to 1.5.0.200327.
2020-03-28 09:08:16 -05:00
Alex Griffin 27d8b9d976
gnu: python-socksipychain: Update to 2.1.1-1.eb5ee87.
* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.1-1.eb5ee87.
2020-03-28 09:07:06 -05:00
Pierre Neidhardt aa7f3ec0e0
gnu: sbcl-cl-containers: Update to 20200212.
* gnu/packages/lisp-xyz.scm (sbcl-cl-containers): Update to 20200212.
2020-03-28 10:39:20 +01:00
Christopher Baines 24b5d8f745
gnu: lollypop: Update to 1.2.32.
* gnu/packages/gnome.scm (lollypop): Update to 1.2.32.
2020-03-28 09:17:59 +00:00
Ricardo Wurmus 27c3afa940
gnu: r-curl: Fix patch to respect CURL_CA_BUNDLE.
Fixes <https://debbugs.gnu.org/40262>.

* gnu/packages/cran.scm (r-curl)[arguments]: Ensure CURLOPT_CAINFO actually
gets set.
2020-03-27 23:38:31 +01:00
Nicolas Goaziou 9fad055023
gnu: grammalecte: Update to 1.8.0.
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.8.0.
2020-03-27 23:37:20 +01:00
Nicolas Goaziou 734eb7d79e
gnu: fet: Update to 5.44.0.
* gnu/packages/education.scm (fet): Update to 5.44.0.
2020-03-27 23:34:37 +01:00
Nicolas Goaziou 57be2cadf8
gnu: emacs-flycheck-grammalecte: Update to 1.0.
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Update to 1.0.
2020-03-27 23:32:11 +01:00
Michael Rohleder f71bce9bb2
gnu: tmate: Update to 2.4.0.
* gnu/packages/terminals.scm (tmate): Update to 2.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-27 16:49:37 -04:00
Michael Rohleder 816bce684c
gnu: Neofetch: Update to 7.0.0.
* gnu/packages/admin.scm (neofetch): Update to 7.0.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-27 16:42:26 -04:00
Ludovic Courtès 7cb77b7896
gnu: mailutils: Update to 3.9.
* gnu/packages/mail.scm (mailutils): Update to 3.9.
[arguments]: In 'prepare-test-suite' phase, adjust name of the mda
'testsuite' files.
2020-03-27 19:09:30 +01:00
Ludovic Courtès 3139739802
gnu: guile-next: Update to 3.0.2.
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2.
* gnu/packages/patches/guile-3.0-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-27 19:09:30 +01:00
Pierre Neidhardt eb5341c235
gnu: Add trivial-package-local-nicknames.
* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames,
  sbcl-trivial-package-local-nicknames): New variables.
2020-03-27 18:40:21 +01:00
Jakub Kądziołka 9483782a61
gnu: rust: Add 1.39
* gnu/packages/rust.scm (rust-1.39): New variable.
  (%cargo-reference-hash): Add a comment explaining the role of the
  variable.
2020-03-27 14:28:11 +01:00
Jakub Kądziołka 444bc2ddf2
gnu: rust: Add 1.38
All packages are still built with rustc 1.37, but users will see rustc
1.38 in their profiles, and packages that require newer compiler
versions will be possible to add.

* gnu/packages/rust.scm (rust-1.31): Factor out the
  patch-command-exec-tests phase to a separate procedure.
  (patch-command-exec-tests-phase): New procedure.
  (rust): Rename to rust-1.37, make rust an alias.
  (rust-1.38): New variable.
2020-03-27 14:28:06 +01:00
Nicolas Goaziou 1a7247c629
gnu: asymptote: Update to 2.65.
* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
2020-03-27 12:20:35 +01:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 37732212a3
gnu: r-locfit: Update to 1.5-9.4.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus c99880320d
gnu: r-class: Update to 7.3-16.
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 3345157fa6
gnu: r-xgboost: Update to 1.0.0.2.
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 76d7ce4f45
gnu: r-rjava: Update to 0.9-12.
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 84b7c4aa17
gnu: r-sf: Update to 0.9-0.
* gnu/packages/cran.scm (r-sf): Update to 0.9-0.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 498c887a96
gnu: r-bayestestr: Update to 0.5.3.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 9c189913e9
gnu: r-hdf5r: Update to 1.3.2.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 6232a36291
gnu: r-ggally: Update to 1.5.0.
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
2020-03-27 11:21:13 +01:00
Christopher Baines 0a76a4e073
gnu: guix-data-service: Update to 0.0.1-19.d1c243f.
These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).

* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
2020-03-26 22:51:36 +00:00
Lars-Dominik Braun 01d5f2c5cd
gnu: Add python-json5.
* gnu/packages/python-xyz.scm (python-json5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
Lars-Dominik Braun aefcfecd84
gnu: Add python-pytest-check-links.
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
Jakub Kądziołka 60eee3e6de
gnu: Add ROPgadget.
* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
2020-03-26 22:53:02 +01:00
Björn Höfling eebaed2b76
gnu: java-tomcat: Update to 8.5.53.
This fixes CVE-2020-1938 ("Ghostcat").

* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
2020-03-26 21:39:49 +01:00
Marius Bakke 3089b70d76
gnu: icu4c: Explicitly add patch flags in replacement package.
This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.

* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
2020-03-26 21:15:08 +01:00
Marius Bakke 9ea9ff6b0f
gnu: help2man: Update to 1.47.13.
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
2020-03-26 20:20:48 +01:00
Alexandros Theodotou 9b0c95cc68
gnu: Add python-pywinrm.
* gnu/packages/python-xyz.scm (python-pywinrm): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou c596359729
gnu: Add python-requests_ntlm.
* gnu/packages/python-web.scm (python-requests_ntlm): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou 163997c961
gnu: Add python-ntlm-auth.
* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou f8dcdf2b36
gnu: Add python-kerberos.
* gnu/packages/python-crypto.scm (python-kerberos): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Roel Janssen 79c395dde3
gnu: Update sambamba to 0.7.1.
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1;
  Remove unneeded undead input.
2020-03-26 18:08:27 +01:00
Naga Malleswari db47adb0c7
gnu: Add 7kaa.
* gnu/packages/games.scm (7kaa): New variable.
2020-03-26 15:55:02 +01:00
Efraim Flashner 50e45d8629
gnu: boinc-client: Update to 7.16.5.
* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
2020-03-26 14:08:24 +02:00
Efraim Flashner f87d594238
gnu: boinc-server: Fix build.
* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl
with openssl-1.0, mariadb with mariadb:dev.
2020-03-26 14:08:24 +02:00
Ludovic Courtès c7af9d0b5e
gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.
Fixes <https://bugs.gnu.org/24076>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/patches/gnupg-default-pinentry.patch: New file.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-03-26 13:07:19 +01:00