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49498 Commits (bd1213708cb4d10b3a9bb633a2b21dc82f39f98b)

Author SHA1 Message Date
Ricardo Wurmus 028f15f523
gnu: r-gdtools: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.1.
 2019-10-18 20:35:28 +02:00
Ricardo Wurmus 1f9fcd3eb4
gnu: r-kernsmooth: Update to 2.23-16. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-16.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-10-18 20:35:28 +02:00
Ricardo Wurmus 67b7a379f0
gnu: r-styler: Update to 1.2.0. 
* gnu/packages/cran.scm (r-styler): Update to 1.2.0.
 2019-10-18 20:35:28 +02:00
Ricardo Wurmus 970eab391a
gnu: r-classint: Update to 0.4-2. 
* gnu/packages/cran.scm (r-classint): Update to 0.4-2.
 2019-10-18 20:35:28 +02:00
Ricardo Wurmus f9598c0485
gnu: r-units: Update to 0.6-5. 
* gnu/packages/cran.scm (r-units): Update to 0.6-5.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus f6f76c932c
gnu: r-strucchange: Update to 1.5-2. 
* gnu/packages/cran.scm (r-strucchange): Update to 1.5-2.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus e22653bf12
gnu: r-biocmanager: Update to 1.30.8. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.8.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus e183a632ab
gnu: r-insight: Update to 0.6.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.6.0.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus 62a6283519
gnu: r-stringdist: Update to 0.9.5.3. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.3.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus 07b69a0c89
gnu: r-htmlwidgets: Update to 1.5.1. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.1.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus b847b06dc3
gnu: r-rhdf5lib: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.3.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus ddebbee6d7
gnu: r-hdf5array: Update to 1.12.3. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.3.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus a15c68bfac
gnu: r-gwascat: Update to 2.16.1. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.1.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus 5d23d9b1c5
gnu: r-ldblock: Update to 1.14.3. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.3.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus 86d5ab8bf4
gnu: r-ensembldb: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.1.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus f0f73313e3
gnu: r-keggrest: Update to 1.24.1. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.1.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus 8c65e219f7
gnu: r-rhdf5: Update to 2.28.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.1.
 2019-10-18 20:35:27 +02:00
Ricardo Wurmus be0af9cc8b
gnu: r-rhtslib: Update to 1.16.3. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.3.
 2019-10-18 20:35:26 +02:00
Ricardo Wurmus b9f39ac986
gnu: r-mlinterfaces: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
 2019-10-18 20:35:26 +02:00
Ricardo Wurmus b62780d9f9
gnu: r-rsamtools: Update to 2.0.3. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.3.
 2019-10-18 20:35:26 +02:00
Ricardo Wurmus 195b18b58e
gnu: bowtie1: Update to 1.2.3. 
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.2.3.
 2019-10-18 20:35:26 +02:00
Christopher Baines 664692c6fc
gnu: guix-data-service: Update to 0.0.1-4.5e2bc7c. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-4.5e2bc7c.
 2019-10-18 18:48:28 +01:00
Tanguy Le Carrour dabcfc6de2
gnu: Add httpie. 
* gnu/packages/python-web.scm (httpie): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-10-18 18:06:38 +03:00
Marius Bakke d8963031af
gnu: upx: Fix UCL input. 
UCL is a runtime dependency, and thus should not be a native input.

* gnu/packages/compression.scm (upx)[native-inputs]: Move UCL from here ...
[inputs]: ... to here.
 2019-10-18 14:43:27 +02:00
Marius Bakke 41c2744463
gnu: ucl: Build shared library instead of static. 
* gnu/packages/compression.scm (ucl)[arguments]: Add "--enable-shared" and
"--disable-static" in #:configure-flags.
 2019-10-18 14:35:58 +02:00
Marius Bakke 01c8b90b7b
gnu: ucl: Update home page. 
* gnu/packages/compression.scm (ucl)[source, home-page]: Use HTTPS.
 2019-10-18 14:35:58 +02:00
Marius Bakke 7349f926c7
gnu: ucl: Build with the C90 standard. 
Fixes <https://bugs.gnu.org/37778>.
Reported by Pierre Neidhardt <mail@ambrevar.xyz>.

* gnu/packages/compression.scm (ucl)[arguments]: New field.
 2019-10-18 14:35:57 +02:00
Marius Bakke 1df9245586
gnu: encfs: Fix build failure with GCC 7. 
Fixes <https://bugs.gnu.org/37779>.
Reported by Pierre Neidhardt <mail@ambrevar.xyz>.

* gnu/packages/crypto.scm (encfs)[arguments]: Add phase 'patch-CMakeLists.txt'.
 2019-10-18 14:35:57 +02:00
Marius Bakke 4ad2c9db7d
gnu: libwacom: Do not build static libraries. 
* gnu/packages/xdisorg.scm (libwacom)[arguments]: New field.
 2019-10-18 14:35:57 +02:00
Marius Bakke e8d6e36107
gnu: libwacom: Update to 1.1. 
* gnu/packages/xdisorg.scm (libwacom): Update to 1.1.
 2019-10-18 14:35:56 +02:00
Marius Bakke 43beec19f4
gnu: looking-glass-client: Disable CPU-specific optimizations. 
* gnu/packages/virtualization.scm (looking-glass-client)[source](modules,
snippet): New fields.
 2019-10-18 14:35:56 +02:00
Marius Bakke a31b745756
gnu: opensubdiv: Use a regular versioning pattern. 
* gnu/packages/graphics.scm (opensubdiv)[version]: Use dots instead of
underscores between numbers.
[source](uri): Adjust accordingly.
 2019-10-18 14:35:56 +02:00
Mark H Weaver 4845dee706
gnu: linux-libre@5.2: Remove. 
The 5.2 release series has reached end-of-life,
and is no longer supported upstream.

* gnu/packages/linux.scm (deblob-scripts-5.2, linux-libre-5.2-version)
(linux-libre-5.2-pristine-source, linux-libre-5.2-source)
(linux-libre-headers-5.2, linux-libre-5.2): Remove variables.
 2019-10-18 08:16:58 -04:00
Mark H Weaver e02c2f85b3
gnu: linux-libre: Update to 5.3.7. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.7.
(linux-libre-5.3-pristine-source): Update hash.
 2019-10-18 07:53:15 -04:00
Mark H Weaver b1b721186a
gnu: linux-libre@4.19: Update to 4.19.80. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.80.
(linux-libre-4.19-pristine-source): Update hash.
 2019-10-18 07:53:13 -04:00
Mark H Weaver e5df2dfce1
gnu: linux-libre@4.14: Update to 4.14.150. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.150.
(linux-libre-4.14-pristine-source): Update hash.
 2019-10-18 07:53:10 -04:00
Mark H Weaver b84d7ac06e
gnu: linux-libre@4.9: Update to 4.9.197. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.197.
(linux-libre-4.9-pristine-source): Update hash.
 2019-10-18 07:53:08 -04:00
Mark H Weaver 6f11d1b54e
gnu: linux-libre@4.4: Update to 4.4.197. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.197.
(linux-libre-4.4-pristine-source): Update hash.
 2019-10-18 07:53:06 -04:00
Pierre Neidhardt 6c16f1a5b3
gnu: lisp: Add most missing source package for Common Lisp libraries. 
* gnu/packages/lisp.scm (cl-parse-js, cl-parse-number, cl-iterate, cl-uglify,
  cl-cffi, cl-sqlite, cl-cffi-gtk, cl-webkit, cl-iolib, cl-ieee-floats,
  cl-xml, cl-reexport, cl-dexador, cl-cookie, cl-lisp-namespace,
  cl-trivial-cltl2, cl-introspect-environment, cl-type-i, cl-optima,
  cl-fare-quasiquote, cl-trivia, cl-mk-string-metrics, cl-str, cl-xmlspam):
  New variables.
 2019-10-18 12:46:25 +02:00
Ludovic Courtès a870f20fd8
news: Add CVE ID. 
* etc/news.scm: Add CVE ID for insecure permissions entry.
 2019-10-18 12:02:52 +02:00
Ludovic Courtès d7fcd9c565
lint: Comment out 'cve' checker. 
* guix/lint.scm (%network-dependent-checkers): Comment out 'cve' checker.
 2019-10-18 12:02:52 +02:00
Tonton b080b6d937
gnu: Add batctl. 
* gnu/packages/networking.scm (batctl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-18 12:02:52 +02:00
Boris A. Dekshteyn ad8aaf47f5
gnu: Add FontManager. 
* gnu/packages/fontutils.scm (fontmanager): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-18 12:02:52 +02:00
Ludovic Courtès e6ea74d86c
pull: Call 'ensure-default-profile' after 'set-build-options'. 
This is a followup to 81c580c866.

* guix/scripts/pull.scm (guix-pull): Move 'ensure-default-profile' call after
'set-build-options-from-command-line' call.  This ensures that the
'profiles/per-user/$USER' directory is created before
'ensure-default-profile' is called when 'GUIX_DAEMON_SOCKET' points to a
remote TCP daemon.
 2019-10-18 12:02:52 +02:00
Guillaume Le Vaillant 63729d9277
gnu: Add ecl-dexador. 
* gnu/packages/lisp.scm (ecl-dexador): New variable.
 2019-10-18 11:09:44 +02:00
Guillaume Le Vaillant 85a898536c
gnu: Add ecl-trivial-mimes. 
* gnu/packages/lisp.scm (ecl-trivial-mimes): New variable.
 2019-10-18 11:09:44 +02:00
Guillaume Le Vaillant 55af9fe0f4
gnu: sbcl-trivial-mimes: Fix 'fix-paths' phase. 
* gnu/packages/lisp.scm (sbcl-trivial-mimes)[arguments]: Use '(%lisp-type)'
  instead of hard coded 'sbcl' in 'fix-paths' phase.
 2019-10-18 11:09:44 +02:00
Guillaume Le Vaillant 5cace974a4
build-system/asdf: Fix package transform. 
* guix/build-system/asdf.scm (package-with-build-system):
  [find-input-package]: New function.
  [rewrite]: Use it.
 2019-10-18 11:09:44 +02:00
Guillaume Le Vaillant f733862cc9
gnu: Add arrows. 
* gnu/packages/lisp.scm (cl-arrows, sbcl-arrows, ecl-arrows): New variables.
 2019-10-18 10:55:52 +02:00
Guillaume Le Vaillant 3de2031097
gnu: cl+ssl: Update to 0.0.0-1.141ae91. 
* gnu/packages/lisp.scm (sbcl-cl+ssl): Update to 0.0.0-1.141ae91.
  [inputs]: Add alexandria and trivial-features.
 2019-10-18 10:52:12 +02:00