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70597 Commits (bd69b54a559095dad8ca4e8700d18c92e6e55811)

Author SHA1 Message Date
zimoun 858eb988a0
gnu: r-sva: Update to 3.38.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.
 2020-12-09 12:12:42 +01:00
zimoun 99bd4f2d7c
gnu: r-methylkit: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.
 2020-12-09 12:12:42 +01:00
zimoun 2ed79a0a42
gnu: r-copywriter: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.
 2020-12-09 12:12:41 +01:00
zimoun 36fd725b6f
gnu: r-chipseq: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.
 2020-12-09 12:12:41 +01:00
zimoun cad3eb4eb4
gnu: r-annotationfilter: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.
 2020-12-09 12:12:41 +01:00
zimoun ec0050c0a9
gnu: r-tximport: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.
 2020-12-09 12:12:41 +01:00
Roel Janssen 6d5a4dd0a7
gnu: r-mutationalpatterns: Update to 3.0.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
 2020-12-09 12:12:41 +01:00
zimoun a823a74525
gnu: r-rcas: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.
 2020-12-09 12:12:41 +01:00
zimoun 2c15a1c502
gnu: r-bamsignals: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.
 2020-12-09 12:12:41 +01:00
zimoun 728369634f
gnu: r-rhtslib: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.
 2020-12-09 12:12:41 +01:00
zimoun b0d85e36f1
gnu: r-zlibbioc: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.
 2020-12-09 12:12:40 +01:00
zimoun 329879b70c
gnu: r-seqlogo: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.
 2020-12-09 12:12:40 +01:00
zimoun 2a70c96e3d
gnu: r-genomation: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.22.0.
 2020-12-09 12:12:40 +01:00
zimoun 44bf116f03
gnu: r-seqpattern: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.22.0.
 2020-12-09 12:12:40 +01:00
zimoun a180744b37
gnu: r-impute: Update to 1.64.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.64.0.
 2020-12-09 12:12:40 +01:00
zimoun e2e11f095f
gnu: r-bsgenome: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.
 2020-12-09 12:12:40 +01:00
Roel Janssen 6a7de43a58
gnu: r-topgo: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
 2020-12-09 12:12:40 +01:00
Roel Janssen 26e2184fc1
gnu: r-genomicfeatures: Update to 1.42.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
 2020-12-09 12:12:40 +01:00
zimoun 92377e7fea
gnu: r-rtracklayer: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
 2020-12-09 12:12:39 +01:00
zimoun 077e813657
gnu: r-genomicalignments: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
 2020-12-09 12:12:39 +01:00
zimoun 3ca5b05474
gnu: r-variantannotation: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:39 +01:00
zimoun 8607a5394b
gnu: r-summarizedexperiment: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:39 +01:00
zimoun 9168ab0911
gnu: r-rsamtools: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.
 2020-12-09 12:12:39 +01:00
zimoun 5d60273b77
gnu: r-biostrings: Update to 2.58.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.
 2020-12-09 12:12:39 +01:00
Roel Janssen 444b101dc2
gnu: r-biocparallel: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.
 2020-12-09 12:12:39 +01:00
zimoun 4fac3fe67d
gnu: r-biomart: Update to 2.46.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.
 2020-12-09 12:12:39 +01:00
zimoun f517365cef
gnu: r-annotationdbi: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.
 2020-12-09 12:12:39 +01:00
zimoun 9103041d13
gnu: r-biobase: Update to 2.50.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.
 2020-12-09 12:12:38 +01:00
zimoun 7641dba3e6
gnu: r-genomicranges: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.
 2020-12-09 12:12:38 +01:00
zimoun d972ab690e
gnu: r-limma: Update to 3.46.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.
 2020-12-09 12:12:38 +01:00
zimoun 5996929b36
gnu: r-edger: Update to 3.32.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.
 2020-12-09 12:12:38 +01:00
zimoun cde7fcedf9
gnu: r-genomeinfodb: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.
 2020-12-09 12:12:38 +01:00
zimoun 2ae3b7db24
gnu: r-bioccheck: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.
 2020-12-09 12:12:38 +01:00
zimoun 1160c83caf
gnu: r-biocstyle: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.
 2020-12-09 12:12:38 +01:00
zimoun 182a080127
gnu: r-biocviews: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.
 2020-12-09 12:12:38 +01:00
zimoun 16a4822a07
gnu: r-grohmm: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.
 2020-12-09 12:12:37 +01:00
Roel Janssen 5598f53497
gnu: r-systempiper: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.
 2020-12-09 12:12:37 +01:00
zimoun a05bb428e4
gnu: r-shortread: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
 2020-12-09 12:12:37 +01:00
zimoun 74204b48eb
gnu: r-gostats: Update to 2.56.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.
 2020-12-09 12:12:37 +01:00
zimoun afbc8e1433
gnu: r-category: Update to 2.56.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.
 2020-12-09 12:12:37 +01:00
zimoun 03312f052a
gnu: r-gseabase: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.0.
 2020-12-09 12:12:37 +01:00
zimoun 7a57b229b6
gnu: r-rbgl: Update to 1.66.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.66.0.
 2020-12-09 12:12:37 +01:00
zimoun 4451918e3a
gnu: r-annotationforge: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.32.0.
 2020-12-09 12:12:37 +01:00
zimoun a323c1e9b4
gnu: r-dexseq: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.36.0.
 2020-12-09 12:12:37 +01:00
zimoun 936227f144
gnu: r-deseq2: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.30.0.
 2020-12-09 12:12:37 +01:00
zimoun 64cf667e98
gnu: r-genefilter: Update to 1.72.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.0.
 2020-12-09 12:12:36 +01:00
Roel Janssen fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
 2020-12-09 12:12:36 +01:00
zimoun 0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link. 
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:36 +01:00
zimoun 2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking. 
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
 2020-12-09 12:12:36 +01:00
zimoun ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking. 
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
 2020-12-09 12:12:36 +01:00