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Author SHA1 Message Date
Christopher Baines ac19e038b4
Switch order of the default substitute servers. 
The aim here is to improve the user experience.  There's anecdotal evidence
that the network performance for bordeaux is better compared to ci at least
for some users, and I don't know of any issues with rate limiting or access
restriction for bordeaux compared to ci.  It also has IPv6 support.

Additionally, bordeaux generally had more substitutes than ci, particularly
for aarch64-linux and armhf-linux.  This change will offer a very slight
speedup for those substitutes that only bordeaux has.

Bordeaux has been a default substitute server for nearly 3 years now and I
think this change is overdue.  I'm also hopeful that we'll be able to build on
the testing regarding mirrors for bordeaux, and that'll allow potentially
improving the hosting setup (through providing more redundancy) and further
improving substitute fetching for users who currently have issues with
substitute access.

* config-daemon.ac: Switch substitute urls order.
* doc/guix.texi: Ditto.
* etc/guix-install.sh: Ditto.
* gnu/installer/newt/network.scm (wait-service-online): Ditto.
* guix/store.scm (%default-substitute-urls): Ditto.

Change-Id: I4f6d93ae1fc8b03d80b47b18b5749a51f1fde17b
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2024-04-03 17:18:38 +01:00
Christopher Baines d439deae12
gnu: sonata: Add gvfs as an input. 
I'm getting the following error and this change resolves it:

  /gnu/store/rw6n86c008xqdbjs3nk4i7ggf6srdpgs-python-wrapper-3.10.7/bin/python:
  symbol lookup error:
  /run/current-system/profile/lib/gio/modules/libgvfsdbus.so: undefined
  symbol: g_task_set_static_name

Change-Id: I6f74a5a867ba7c3b3d7b233916af0e75d9e5501f
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2024-04-03 17:18:35 +01:00
Janneke Nieuwenhuizen df64d48e6f
maint: Fix help2man for guix subcommands with `make V=2'. 
* doc/local.mk ($(srcdir)/%D%/guix-%.1): Use AM_V_HELP2MAN and cater for
make's `@' silencing at the start of the command.

Change-Id: Id80c48f0d7697167fea64700a7fe140003732d28
 2024-04-03 16:19:47 +02:00
Liliana Marie Prikler 1dbe492b99
gnu: emacs-magit: Fix generation of autoloads. 
* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases]: Replace ‘make-autoloads’
like the others.

Fixes: Magit autoloads are missing <https://bugs.gnu.org/70121>
Change-Id: Iec1d89b167211889743ed1e7e64a9f866ea4c2eb
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-04-03 12:36:41 +02:00
Maxim Cournoyer f26b42f6c0
gnu: qt-creator: Fix patch-perfparser phase. 
This is a follow-up to f83bdd7e00 ("gnu: qt-creator: Patch file names of
demangling libraries.")

* gnu/packages/qt.scm (qt-creator)
[phases] <patch-perfparser>: Adjust demangler.cpp file name.

Change-Id: I72c517636bf866b57daa5d56dd8db643b0669a88
 2024-04-02 23:51:05 -04:00
Maxim Cournoyer 1a237ebc73
gnu: Add hotspot. 
* gnu/packages/linux.scm (hotspot): New variable.

Change-Id: Id6a0baae459bccf78c80d17f884f3fa7344ff1ac
 2024-04-02 21:30:36 -04:00
Maxim Cournoyer 98bc6d705e
gnu: Add kddockwidgets-1. 
* gnu/packages/qt.scm (kddockwidgets-1): New variable.

Change-Id: Id766646155e02d412ea87932a79aae95a943ff9b
 2024-04-02 21:30:36 -04:00
Maxim Cournoyer 9d4e274eb4
gnu: Add kddockwidgets. 
* gnu/packages/qt.scm (kddockwidgets): New variable.

Change-Id: I0598b16da4f027f9c42584f30a49fcbba2f5a78e
 2024-04-02 21:30:36 -04:00
Maxim Cournoyer f83bdd7e00
gnu: qt-creator: Patch file names of demangling libraries. 
* gnu/packages/qt.scm (qt-creator)
[phases] {patch-perfparser}: New phase.

Change-Id: I65f84158af05ae866680b21e2e9b8e24a2b71bc2
 2024-04-02 21:30:36 -04:00
Maxim Cournoyer 4a8f265b17
gnu: cqfd: Update to 5.5.0. 
* gnu/packages/docker.scm (cqfd): Update to 5.5.0.

Change-Id: Ib8ba9ee06744869efc1489beb4e2d56fe0cc06e0
 2024-04-02 21:30:36 -04:00
Janneke Nieuwenhuizen 049273bb8c
maint: Add perl to the manifest. 
* manifest.scm: Add perl.

Change-Id: Ie70cea1eb4d62f2a649292209391a92abdae2288
 2024-04-02 23:28:58 +02:00
Attila Lendvai 4d994f98a4
gnu: gpaste: Update to 44.1. 
* gnu/packages/gnome-xyz.scm (gpaste): Update to 44.1.
[native-inputs]: Replace GCR-3 with GCR.
[inputs]: Replace GTK with GTK+. Add DESKTOP-FILE-UTILS. Remove LIBARCHIVE.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I9e9548a9e3393dfa4b9e7b64978418106fb25db1
 2024-04-02 15:04:26 -04:00
Eugen Stan e82dc389f5
gnu: clojure-tools: Update to 1.11.1.1413. 
* gnu/packages/clojure.scm (clojure-tools): Update to 1.11.1.1413.
[inputs]: Add clojure-tools-deps.  Remove clojure-tools-deps-alpha.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I52fda6af441d1cd2ba271153f87eb0c35bce31cb
 2024-04-02 21:08:40 +03:00
Eugen Stan 7375c5aa1b
gnu: Add clojure-tools-deps. 
* gnu/packages/crates-io.scm (clojure-tools-deps): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: Ic02349bfe5b899874ff8e6067e790ca9d9f1f96e
 2024-04-02 21:07:42 +03:00
Andy Tai 1999197630
gnu: icewm: Update to 3.4.7. 
* gnu/packages/wm.scm (icewm): Update to 3.4.7.

Change-Id: I6daa66be92a01ae587efec2bf3f0ac4769ae797a
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:26:48 +03:00
Rodion Goritskov e85734f6dd
gnu: clifm: Update to 1.18. 
* gnu/packages/clifm.scm (clifm): Update to 1.18.

Change-Id: Ic0c2a307dbbcca06cfffe60248234849dca2f726
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:17 +03:00
Leo Nikkilä a88b0c23c3
gnu: gtk: Fix tests on aarch64. 
* gnu/packages/gtk.scm (gtk)[arguments]<#:configure-flags>: Skip more
failing tests known to fail.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I34d0f7521224b41072fcc0c35321935d1db927e0
 2024-04-02 16:19:16 +03:00
Efraim Flashner ba76b27de9
Revert "gnu: gtk: Skip failing tests on aarch64-linux." 
This reverts commit 76ed1e886e.

The next commit does a better job of skipping the tests.
 2024-04-02 16:19:16 +03:00
Andy Tai acf370eebe
gnu: parallel: Update to 20240322. 
* gnu/packages/parallel.scm (parallel): Update to 20240322.

Change-Id: I7207d4847cd407de637334688242132e8c557490
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
Fredrik Salomonsson e678b1a747
gnu: pinentry-rofi: Update to 2.1.0. 
* gnu/packages/gnupg.scm (pinentry-rofi): Update to 2.1.0.

Change-Id: Ie39dfadc9905032e2a6cd08858596b7fdfd5c6dd
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
Denis 'GNUtoo' Carikli a159bf633e
gnu: debootstrap: Use pureos-archive-keyring. 
* gnu/packages/debian.scm (debootstrap): [arguments]: In 'patch-source'
phase, use pureos-archive-keyring.
[inputs]: Add pureos-archive-keyring.

Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Change-Id: I8bf0a7db50c66dcf3541e5c7244350ff9523d921
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
Denis 'GNUtoo' Carikli ea8981cf97
gnu: Add pureos-archive-keyring. 
* gnu/packages/debian.scm (pureos-archive-keyring): New variable.

Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Change-Id: I80af4b15c7fe20dd40358d4f676a89903060bf07
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
dan ddffc370ef
gnu: greetd: Fix cross-compilation. 
* gnu/packages/admin.scm (greetd): Fix cross-compilation.
[native-inputs]: Move linux-pam from here ...
[inputs]: ... to here.
[arguments]<#:phases>: Set release directory based on target.

Change-Id: I822f8f215677bc951b21e46dddf44954a43df58f
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
Tomas Volf af67e6d70c
gnu: ngtcp2: Update to 1.4.0. 
* gnu/packages/networking.scm (ngtcp2): Update to 1.4.0.

Change-Id: I87a91913dd12affe18d240235c39a5639c798801
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
dan 8439ee4fa0
gnu: ccid: Fix cross-compilation. 
* gnu/packages/security-token.scm (ccid): Fix cross-compilation.

Change-Id: I15c96a57e155742f5a2a8394402ae0fb0563f663
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
Zheng Junjie 9142c50c6d
gnu: libjxl: Fix build on riscv64-linux. 
* gnu/packages/image.scm (libjxl)
[arguments]: Add fix-atomic phase when target riscv64-linux.

Change-Id: I442c668c3d52c241f0d405f51ea8d995bfefd3fd
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-04-02 16:19:16 +03:00
Janneke Nieuwenhuizen 7af70efd76
gnu: ruby-stackprof: Remove store file name. 
This is a follow-up to commit
    d7e092719a4e0e168df56c03076a87c0e32692e5|head
    gnu: ruby-stackprof: Skip test known to fail.

* gnu/packages/ruby.scm (ruby-stackprof): Remove literal store file name from
comment.  This fixes `make dist'.

Change-Id: Ifc71c9f664790a27a0ed7f3dacd2189dbc1f6ba6
 2024-04-02 13:27:36 +02:00
Ricardo Wurmus ea53e621d4
gnu: r-tcgabiolinks: Update to 2.30.4. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.4.

Change-Id: Ib0f5a7f9855c21b378060b7a9e1af031effda624
 2024-04-02 11:01:52 +02:00
Ricardo Wurmus a0ed61d7ff
gnu: r-bionero: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.3.

Change-Id: I03b6f9259c05a6915d3e5425ab9165067c400f03
 2024-04-02 11:01:51 +02:00
Ricardo Wurmus 9fd70160bd
gnu: r-catalyst: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.1.

Change-Id: I32cff6ff74a76770212ab24a08805baf00bb7adc
 2024-04-02 11:01:51 +02:00
Ricardo Wurmus cce0c8ae3e
gnu: r-biocfilecache: Update to 2.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.2.

Change-Id: I23fdcff4ba85610aeee21504ff9313c6163d46bd
 2024-04-02 11:01:51 +02:00
Ricardo Wurmus 0f92aad040
gnu: r-seqarray: Update to 1.42.3. 
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.3.

Change-Id: I8fedfd9709519ad2b1533840747402a56a4af2b5
 2024-04-02 11:01:51 +02:00
Ricardo Wurmus df47f4fa27
gnu: r-lme4: Update to 1.1-35.2. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.2.

Change-Id: Iadd5c9d4a3903360e4e61920da3b2c5b83be882f
 2024-04-02 10:04:29 +02:00
Ricardo Wurmus ac87de2919
gnu: r-rsqlite: Update to 2.3.6. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.6.

Change-Id: Ib0404ffaceb949d7665aa22fc40c49c95cf3dd2c
 2024-04-02 10:04:29 +02:00
Ricardo Wurmus 129ff4d247
gnu: r-data-table: Update to 1.15.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.4.

Change-Id: Ia36df7314f9b85b5bac32f2c6dc661460f8aa5ec
 2024-04-02 10:04:29 +02:00
Ricardo Wurmus 4a8ef8e917
gnu: r-munsell: Update to 0.5.1. 
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.1.

Change-Id: I526337679f81d865f81b8b603305bf5f7b611539
 2024-04-02 10:04:29 +02:00
Ricardo Wurmus 37d1fc0151
gnu: r-codetools: Update to 0.2-20. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-20.

Change-Id: I81f61bfa1a5db3f0c6e9738735cc47536e5968ae
 2024-04-02 10:04:29 +02:00
Ricardo Wurmus 7bca3d4340
gnu: r-textshape: Update to 1.7.5. 
* gnu/packages/cran.scm (r-textshape): Update to 1.7.5.

Change-Id: I070fd0e29ae4498515696ba11968684618783e62
 2024-04-02 10:04:28 +02:00
Ricardo Wurmus 554b2740d5
gnu: r-metafor: Update to 4.6-0. 
* gnu/packages/cran.scm (r-metafor): Update to 4.6-0.

Change-Id: Idac90e66df71c8d316885966012a731d72310722
 2024-04-02 10:04:28 +02:00
Ricardo Wurmus bd2663ab68
gnu: r-iml: Update to 0.11.2. 
* gnu/packages/cran.scm (r-iml): Update to 0.11.2.
[propagated-inputs]: Remove r-prediction.

Change-Id: I9641fb9ab9e8093c9e1ece679b26799d833c158b
 2024-04-02 10:04:28 +02:00
Ricardo Wurmus 3dcc3c5a78
gnu: r-eulerr: Update to 7.0.2. 
* gnu/packages/cran.scm (r-eulerr): Update to 7.0.2.

Change-Id: I2cba2668de9efbbe279dd7ee89d36aab6631d7ec
 2024-04-02 10:04:28 +02:00
Ricardo Wurmus 5e39d0990d
gnu: r-future-apply: Update to 1.11.2. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.11.2.

Change-Id: Ie1cb584486734ee62c726393cedd17ad7fb5639d
 2024-04-02 10:04:28 +02:00
Ricardo Wurmus 64319857e5
gnu: r-epi: Update to 2.48. 
* gnu/packages/cran.scm (r-epi): Update to 2.48.

Change-Id: Ibc1817d26895962740177c02b95cf089658443e6
 2024-04-02 10:04:28 +02:00
Ricardo Wurmus e5aba86aad
gnu: r-arm: Update to 1.14-4. 
* gnu/packages/cran.scm (r-arm): Update to 1.14-4.

Change-Id: I5786ca735bbf67402d332a4bc7481b6ca4a7d1bc
 2024-04-02 10:04:27 +02:00
Ricardo Wurmus 3534632cd5
gnu: r-gh: Update to 1.4.1. 
* gnu/packages/cran.scm (r-gh): Update to 1.4.1.
[propagated-inputs]: Add r-glue and r-lifecycle.

Change-Id: Ifb23c4ab6f128c172780bf52fda6176771cfd616
 2024-04-02 10:04:27 +02:00
Ricardo Wurmus f17c477cf6
gnu: r-effectsize: Update to 0.8.7. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.8.7.

Change-Id: I909f9de3fbaf19acf0eeaaa17f60673c5208297e
 2024-04-02 10:04:27 +02:00
Ricardo Wurmus 69a9bdf8d8
gnu: r-hardyweinberg: Update to 1.7.7. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.7.
[propagated-inputs]: Add r-shape.

Change-Id: I6bbff3c991abe26ea3fd092a41bca455ed0bc0a3
 2024-04-02 10:04:27 +02:00
Ricardo Wurmus 5e9c66ddc4
gnu: r-httr2: Update to 1.0.1. 
* gnu/packages/cran.scm (r-httr2): Update to 1.0.1.

Change-Id: I4961227d5e26a3cbf9999b395bb9c3fce6321861
 2024-04-02 10:04:27 +02:00
Ricardo Wurmus 50ae661dca
gnu: r-collapse: Update to 2.0.12. 
* gnu/packages/cran.scm (r-collapse): Update to 2.0.12.

Change-Id: Id30326eaddfb6d546524db366160ce39905527c8
 2024-04-02 10:04:27 +02:00
Ricardo Wurmus 1f9b1187e0
gnu: r-microbiomestat: Update to 1.2. 
* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.2.
[propagated-inputs]: Remove r-phyloseq.

Change-Id: I3a0133e9318f86d162ca562708fbf5fe6703407d
 2024-04-02 10:04:27 +02:00