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47345 Commits (bead506555b147aaa438ba50b3b429e758fce324)

Author SHA1 Message Date
Tobias Geerinckx-Rice bead506555
gnu: s6-linux-init: Update to 1.0.4.0.
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.4.0.
2020-03-09 16:01:17 +01:00
Guillaume Le Vaillant 0ccc138517
gnu: Add spatialite-tools.
* gnu/packages/geo.scm (spatialite-tools): New variable.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant 133de9ab38
gnu: Add readosm.
* gnu/packages/geo.scm (readosm): New variable.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant e8906d86ee
gnu: spatialite-gui: Add missing input.
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant 3cf0a5dc53
gnu: gdal: Update to 3.0.4.
* gnu/packages/geo.scm (gdal): Update to 3.0.4.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant 9147d1216e
gnu: proj: Update to 6.3.1.
* gnu/packages/geo.scm (proj): Update to 6.3.1.
2020-03-09 15:21:45 +01:00
Roel Janssen 4960c03d1d
gnu: Add perl-math-vecstat.
* gnu/packages/perl.scm (perl-math-vecstat): New variable.
2020-03-09 15:18:13 +01:00
Roel Janssen b4e1ca0675
gnu: python-semver: Fix build.
* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib,
  python-importlib-metadata, python-filelock, and python-six to native-inputs
  in order to run the test suite.
2020-03-09 14:50:35 +01:00
Roel Janssen c0f6446579
gnu: Fix build of python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to
  native-inputs to make the test suite run succesfully.
2020-03-09 14:34:41 +01:00
Efraim Flashner fb29d7d70c
gnu: Add vim-asyncrun.
* gnu/packages/vim.scm (vim-asyncrun): New variable.
2020-03-09 14:45:38 +02:00
Efraim Flashner 61daf2dbc9
gnu: Add nyancat.
* gnu/packages/toys.scm (nyancat): New variable.
2020-03-09 14:31:25 +02:00
Roel Janssen b6574660e3
gnu: Update python-statsmodels to 0.11.1.
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
2020-03-09 13:01:27 +01:00
Pierre Neidhardt 6dfc981a98
gnu: Add sycamore.
* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
2020-03-09 10:55:46 +01:00
Pierre Neidhardt 698a34482a
gnu: emacs-sly: Update to 20200228.
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
2020-03-09 09:42:04 +01:00
Ricardo Wurmus c3b6d61df3
gnu: r-desolve: Update to 1.28.
* gnu/packages/cran.scm (r-desolve): Update to 1.28.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus 103de43c67
gnu: r-umap: Update to 0.2.5.0.
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus ea20989d87
gnu: r-rcppannoy: Update to 0.0.16.
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus 207ba868a3
gnu: r-quantmod: Update to 0.4-16.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus bcbcd17d45
gnu: r-vcd: Update to 1.4-6.
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus fec7f576b4
gnu: r-ggrepel: Update to 0.8.2.
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
2020-03-09 08:51:36 +01:00
Christopher Baines 67d21e2b08
gnu: guix-data-service: Update to 0.0.1-18.18eb9df.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
2020-03-08 23:35:00 +00:00
Jakub Kądziołka 94d57ba339
gnu: python-virtualenv: Update to 20.0.8.
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
  [arguments]: Remove the now-redundant 'disable-failing-test phase.
  [native-inputs]: Add python-setuptools and python-setuptools-scm.
  [inputs]: Add python-{appdirs, distlib, filelock, six,
  importlib-metadata}.
2020-03-09 00:20:49 +01:00
Jakub Kądziołka 6e79208954
gnu: python-xyz: Add python-filelock.
* gnu/packages/python-xyz.scm (python-filelock): New variable.
2020-03-09 00:20:47 +01:00
Jakub Kądziołka f2a6483084
gnu: python-xyz: Add python-distlib.
* gnu/packages/python-xyz.scm (python-distlib): New variable.
2020-03-09 00:20:46 +01:00
Ricardo Wurmus 830eac9c27
gnu: ngless: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
2020-03-08 23:37:09 +01:00
Ricardo Wurmus 3f68f76eaf
gnu: Add jack-select.
* gnu/packages/music.scm (jack-select): New variable.
2020-03-08 23:13:11 +01:00
Ricardo Wurmus 46a864e7c1
gnu: taxtastic: Update to 0.8.11.
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
2020-03-08 22:50:16 +01:00
Ludovic Courtès d6d0e10b3d
gnu: guile-next: Revert to 3.0.0.
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.

* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
2020-03-08 22:15:54 +01:00
Roel Janssen 3d33ca27b2
gnu: Add perl-config-inifiles.
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
2020-03-08 21:50:44 +01:00
Roel Janssen d0ca79e53d
gnu: Add perl-attribute-util.
* gnu/packages/perl.scm (perl-attribute-util): New variable.
2020-03-08 21:50:32 +01:00
Efraim Flashner 30acf2f959
gnu: Add font-opendyslexic.
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
2020-03-08 22:42:33 +02:00
Ludovic Courtès e5059c95aa
gnu: beep: Remove dependency on GCC 8.
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
2020-03-08 21:21:57 +01:00
Vincent Legoll 1d91680c84
gnu: beep: Update to 1.4.9.
* gnu/packages/terminals.scm (beep): Update to 1.4.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
Ludovic Courtès 1a30351bf3
gnu: guile-next: Update to 3.0.1.
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1.  Use "mirror://" URL.
2020-03-08 21:21:57 +01:00
Ricardo Wurmus c32897b6e4
gnu: r-robust: Update to 0.5-0.0.
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
2020-03-08 16:02:04 +01:00
Ricardo Wurmus 7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0.
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
2020-03-08 16:02:04 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
2020-03-08 16:02:04 +01:00
Hartmut Goebel 6434f9b634
gnu: Reword and extend descriptions for some KDE packages.
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
  kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
  kontactinterface, kpimtextedit)[description]: Reword and extend.
  (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
  (kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
2020-03-08 14:06:00 +01:00
Martin Becze 1eb3b2b666
gnu: Add emacs-org-journal.
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
2020-03-08 11:19:16 +01:00
Roel Janssen e2ca10a46f
gnu: python-umap-learn: Fix build.
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
2020-03-08 10:20:22 +01:00
Leo Famulari be3908fa14
gnu: QEMU: Fix CVE-2020-8608.
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2020-03-07 16:37:25 -05:00
Lars-Dominik Braun 83ac7cb42b
gnu: brotli: Remove package
Same package is provided by google-brotli.

* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
Lars-Dominik Braun d9476a3700
gnu: woff2: Update to 1.0.2
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
Vincent Legoll 74ff08e6b8
gnu: ccache: Fix indentation
* gnu/packages/ccache.scm (ccache): Fix indentation

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
Vincent Legoll 9eb456b8c7
gnu: ccache: Update to 3.7.7.
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
Ludovic Courtès 24a4a635fd
gnu: eudev: Add variant with corrected Btrfs rules.
Discussed at <https://bugs.gnu.org/39926>.

* gnu/packages/linux.scm (eudev/btrfs-fix): New variable.
* gnu/services/base.scm (<udev-configuration>)[udev]: Default to it.
(udev-service): Likewise for #:udev.
2020-03-07 22:30:00 +01:00
Ludovic Courtès 8ab060b68b
gnu: guile: Add 2.2.7.
* gnu/packages/guile.scm (guile-2.2.7): New variable.
(guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7.
* gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7.
* gnu/packages/patches/guile-finalization-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-07 22:29:44 +01:00
Nicolas Goaziou 2519e4cba8
gnu: emacs-xr: Update to 1.17.
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
2020-03-07 21:42:45 +01:00
Nicolas Goaziou f61b980f5d
gnu: emacs-relint: Update to 1.15.
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
2020-03-07 21:41:06 +01:00
Ricardo Wurmus 1c9e3e9f36
gnu: r-dplyr: Update to 0.8.5.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5.
[native-inputs]: Add r-knitr.
2020-03-07 20:03:55 +01:00