c057507a0b
gnu: icewm: Update to 3.4.1
...
* gnu/packages/wm.scm (icewm): Update to 3.4.1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 23:34:12 +02:00
f59a1dc924
gnu: armagetronad: Update to 0.2.9.1.1.
...
* gnu/packages/games.scm (armagetronad): Update to 0.2.9.1.1.
[inputs]: Add sdl-mixer to fix game audio.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 23:32:51 +02:00
a5d207f0db
gnu: kwin: Unwrap executable name for desktop file search.
...
see https://github.com/NixOS/nixpkgs/pull/116549
* gnu/packages/patches/kwin-unwrap-executable-name-for-dot-desktop-search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-plasma.scm (kwin)[origin]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 23:30:46 +02:00
0a6ad454a3
gnu: nanosvg: Add a patch for PrusaSlicer 2.6.
...
* gnu/packages/graphics.scm (nanosvg): Add a patch that is required to build
PrusaSlicer 2.6.
* gnu/packages/patches/nanosvg-prusa-slicer.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 23:15:48 +02:00
50725212f0
gnu: dpf-plugins: Update to 1.7.
...
Message-Id: <23da89c3cbf2358ac70d387ebd714abe03b6758e.1686926462.git.sughosha@proton.me>
From: Sughosha <sughosha@proton.me>
Date: Fri, 16 Jun 2023 16:22:57 +0200
Subject: [PATCH 1/2] gnu: dpf-plugins: Update to 1.7.
* gnu/packages/music.scm (dpf-plugins): Update to 1.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 23:02:59 +02:00
c0bfa12666
gnu: uncrustify: use new style and gexp.
...
* gnu/packages/code.scm (uncrustify): use new style and gexp.
[native-inputs]: remove label.
[arguments]: use gexp and remove tail #t.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 22:58:59 +02:00
ca5fae4f26
gnu: uncrustify: Update to 0.77.1.
...
* gnu/packages/code.scm (uncrustify): Update to 0.77.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 22:58:57 +02:00
258729b928
gnu: makefile2graph: fix cross-compile.
...
* gnu/packages/code.scm (makefile2graph): fix cross-compile.
[arguments]: Use gexp and CC-FOR-TARGET.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 22:58:25 +02:00
55da0930e3
gnu: openmpi: Enable PMIx.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass “--with-pmix=internal”.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 22:55:25 +02:00
62e1387065
gnu: npiet: Use gexps.
...
* gnu/packages/piet.scm (npiet): Use Gexp.
[arguments]: Use Gexp and remove tail #t.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 17:03:54 +02:00
40a76a7750
gnu: npiet: Fix cross-compilation.
...
* gnu/packages/piet.scm (npiet)[arguments]<#:phases>: Use
SEARCH-INPUT-FILE replace WHICH.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 17:03:18 +02:00
9aeb9e7cc8
gnu: rottlog: Add gawk as an input.
...
This avoids an issue where rottlog will delete the entire /tmp directory
if gawk is not installed. See <https://issues.guix.gnu.org/65793 >.
* gnu/packages/admin.scm (rottlog): Add gawk input, also update the
patch-paths build phase for awk invocations.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 16:50:40 +02:00
6c72db7314
gnu: neofetch: Fix cross-compiling.
...
* gnu/packages/admin.scm (neofetch): Fix cross-compiling.
[arguments]: Use Gexp.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 16:47:46 +02:00
de64e412f3
gnu: tor: Update to 0.4.8.5.
...
* gnu/packages/tor.scm (tor): Update to 0.4.8.5.
* gnu/packages/tor.scm (tor)[arguments]<#:configure-flags>:
Add "--enable-gpl".
* gnu/packages/patches/tor-remove-defensive-assert.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/tor.scm (tor)[source]: Add patch to remove defensive
assert.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 16:39:20 +02:00
08e8c3483f
gnu: syncthing: Update to 1.23.7.
...
The uraggregate binary was merged into ursrv, so don’t attempt to install it.
* gnu/packages/syncthing.scm (syncthing): Update to 1.23.7.
[arguments]: Build with go-1.20.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 16:13:49 +02:00
e645a53d87
gnu: Add stklos.
...
* gnu/packages/scheme.scm (stklos): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 16:12:28 +02:00
2643fa3513
home: services: redshift: Use redshift package specified in configuration
...
* gnu/home/services/desktop.scm (redshift-shepherd-service): Use the redshift
package specified by config.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14 15:53:23 +02:00
e5f7c14ef6
gnu: python-requests_ntlm: Update to 1.2.0.
...
* gnu/packages/python-web.scm (python-requests_ntlm): Update to 1.2.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-09-14 12:58:17 +03:00
c36d4760c6
gnu: perl-cworld-dekker: Drop labels from inputs.
...
* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use
G-expression and avoid references to labeled inputs.
[inputs]: Drop labels.
2023-09-14 11:17:48 +02:00
0ce57ea4a1
gnu: dpkg: Update to 1.22.0.
...
* gnu/packages/debian.scm (dpkg): Update to 1.22.0.
[arguments]: Wrap another script in the custom 'wrap-scripts phase.
2023-09-14 11:37:36 +03:00
6226b8f72d
gnu: debootstrap: Hardcode location of archive keyrings.
...
* gnu/packages/debian.scm (debootstrap)[arguments]: Adjust custom
'patch-source phase to hardcode the location of the archive keyrings.
2023-09-14 11:37:36 +03:00
180502f28f
gnu: debootstrap: Update to 1.0.132.
...
* gnu/packages/debian.scm (debootstrap): Update to 1.0.132.
2023-09-14 11:37:36 +03:00
cf5cb0875b
gnu: r-delayedmatrixstats: Update to 1.22.6.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.6.
2023-09-14 08:57:24 +02:00
c8e7ea8a8b
gnu: r-rhdf5lib: Update to 1.22.1.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.1.
2023-09-14 08:57:24 +02:00
ebaf944cdd
gnu: r-s4arrays: Update to 1.0.6.
...
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.6.
2023-09-14 08:57:24 +02:00
9232ef7986
gnu: r-clusterprofiler: Update to 4.8.3.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.3.
2023-09-14 08:57:24 +02:00
8cfd6e804a
gnu: r-greylistchip: Update to 1.32.1.
...
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.1.
2023-09-14 08:57:24 +02:00
8fe9e14917
gnu: r-tcgautils: Update to 1.20.4.
...
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.20.4.
[propagated-inputs]: Add r-biocbaseutils.
2023-09-14 08:57:24 +02:00
7f983fb730
gnu: r-shinymethyl: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.1.
2023-09-14 08:57:24 +02:00
a1245f559d
gnu: r-genomicdatacommons: Update to 1.24.3.
...
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.24.3.
[propagated-inputs]: Add r-tidyr.
2023-09-14 08:57:24 +02:00
6e06c0032c
gnu: r-genomeinfodb: Update to 1.36.3.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.3.
2023-09-14 08:57:24 +02:00
028ebb8edb
gnu: libwebp: Replace with 1.3.2. [fixes CVE-2023-4863]
...
* gnu/packages/image.scm (libwebp/fixed): Update to 1.3.2.
2023-09-14 06:54:28 +02:00
2afa9353a0
gnu: r-reghelper: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-reghelper): Update to 1.1.2.
[propagated-inputs]: Add r-rlang.
2023-09-14 00:04:16 +02:00
3d402fbf1d
gnu: r-desctools: Update to 0.99.50.
...
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.50.
2023-09-14 00:04:16 +02:00
97e5c897c4
gnu: r-lmom: Update to 3.0.
...
* gnu/packages/statistics.scm (r-lmom): Update to 3.0.
2023-09-14 00:04:16 +02:00
fd1d1e11a2
gnu: r-deoptimr: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-2.
2023-09-14 00:04:16 +02:00
894c89b1d8
gnu: r-rematch: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-rematch): Update to 2.0.0.
2023-09-14 00:04:16 +02:00
fcf5c595e2
gnu: r-rcpparmadillo: Update to 0.12.6.4.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.4.0.
2023-09-14 00:04:16 +02:00
800aab705c
gnu: r-dplyr: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.3.
2023-09-14 00:04:16 +02:00
44dfcc013a
gnu: r-knitr: Update to 1.44.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.44.
2023-09-14 00:04:16 +02:00
8f68be3264
gnu: r-labeling: Update to 0.4.3.
...
* gnu/packages/statistics.scm (r-labeling): Update to 0.4.3.
2023-09-14 00:04:16 +02:00
1a7612a64c
gnu: r-foreign: Update to 0.8-85.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-85.
2023-09-14 00:04:16 +02:00
b832880b1e
gnu: r-ggh4x: Update to 0.2.6.
...
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.6.
2023-09-14 00:04:16 +02:00
772f00b171
gnu: r-mlearning: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-mlearning): Update to 1.2.1.
[propagated-inputs]: Add r-rpart.
2023-09-14 00:04:16 +02:00
b2610240c4
gnu: r-paws-compute: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-compute): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
c165a1fa9b
gnu: r-paws-storage: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-storage): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
30bd163d01
gnu: r-paws-database: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-database): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
2e8126e3ba
gnu: r-paws-networking: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-networking): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
98c8da964f
gnu: r-paws-management: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-management): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
9497c4dbff
gnu: r-paws-machine-learning: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
ba2fa58be0
gnu: r-paws-analytics: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
6e8f6654d7
gnu: r-paws-security-identity: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.4.0.
2023-09-14 00:04:15 +02:00
90aa4f2afe
gnu: r-paws-application-integration: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.4.0.
2023-09-14 00:04:14 +02:00
4052f7d113
gnu: r-paws-end-user-computing: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.4.0.
2023-09-14 00:04:14 +02:00
ab20ed6424
gnu: r-paws-developer-tools: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.4.0.
2023-09-14 00:04:14 +02:00
6a6c29efb5
gnu: r-paws-cost-management: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-cost-management): Update to 0.4.0.
2023-09-14 00:04:14 +02:00
067f519a4d
gnu: r-paws-customer-engagement: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.4.0.
2023-09-14 00:04:14 +02:00
a2afbbed24
gnu: r-paws-common: Update to 0.6.0.
...
* gnu/packages/cran.scm (r-paws-common): Update to 0.6.0.
2023-09-14 00:04:14 +02:00
0285844e14
gnu: r-distributionutils: Update to 0.6-1.
...
* gnu/packages/cran.scm (r-distributionutils): Update to 0.6-1.
2023-09-14 00:04:14 +02:00
6bf5162b1d
gnu: r-stars: Update to 0.6-4.
...
* gnu/packages/cran.scm (r-stars): Update to 0.6-4.
[propagated-inputs]: Remove r-lwgeom.
2023-09-14 00:04:14 +02:00
1b2d3cf25d
gnu: r-packcircles: Update to 0.3.6.
...
* gnu/packages/cran.scm (r-packcircles): Update to 0.3.6.
2023-09-14 00:04:13 +02:00
6287891b2a
gnu: r-pbdmpi: Update to 0.5-0.
...
* gnu/packages/cran.scm (r-pbdmpi): Update to 0.5-0.
[propagated-inputs]: Remove r-rlecuyer.
2023-09-14 00:04:13 +02:00
d8ac99ec8e
gnu: r-readods: Update to 2.1.0.
...
* gnu/packages/cran.scm (r-readods): Update to 2.1.0.
[propagated-inputs]: Remove r-xml2.
2023-09-14 00:04:13 +02:00
fe2a36ed5b
gnu: r-diversitree: Update to 0.9-20.
...
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-20.
2023-09-14 00:04:13 +02:00
8da1449818
gnu: r-seqminer: Update to 9.1.
...
* gnu/packages/cran.scm (r-seqminer): Update to 9.1.
2023-09-14 00:04:13 +02:00
09b6be49e8
gnu: r-infer: Update to 1.0.5.
...
* gnu/packages/cran.scm (r-infer): Update to 1.0.5.
[propagated-inputs]: Add r-vctrs.
2023-09-14 00:04:12 +02:00
eb0ba6f494
gnu: r-config: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-config): Update to 0.3.2.
2023-09-14 00:04:12 +02:00
9de7344c48
gnu: r-spatstat-random: Update to 3.1-6.
...
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.1-6.
2023-09-14 00:04:12 +02:00
3bf11b1eea
gnu: r-spatstat-geom: Update to 3.2-5.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-5.
2023-09-14 00:04:12 +02:00
1e6db67bc1
gnu: r-spatstat-model: Update to 3.2-6.
...
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-6.
2023-09-14 00:04:12 +02:00
9cf2cf4c9a
gnu: r-spatstat-explore: Update to 3.2-3.
...
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.2-3.
2023-09-14 00:04:12 +02:00
f8fdfb731f
gnu: r-directlabels: Update to 2023.8.25.
...
* gnu/packages/cran.scm (r-directlabels): Update to 2023.8.25.
2023-09-14 00:04:12 +02:00
d471fd760d
gnu: r-rsconnect: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-rsconnect): Update to 1.1.0.
2023-09-14 00:04:11 +02:00
b40994d97d
gnu: r-packrat: Update to 0.9.2.
...
* gnu/packages/cran.scm (r-packrat): Update to 0.9.2.
2023-09-14 00:04:11 +02:00
3c3dbf2196
gnu: r-stanheaders: Update to 2.26.28.
...
* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.28.
2023-09-14 00:04:11 +02:00
2b40d9b13a
gnu: r-forecast: Update to 8.21.1.
...
* gnu/packages/cran.scm (r-forecast): Update to 8.21.1.
2023-09-14 00:04:11 +02:00
cd57a3ec9f
gnu: r-emplik: Update to 1.3-1.
...
* gnu/packages/cran.scm (r-emplik): Update to 1.3-1.
2023-09-14 00:04:11 +02:00
39c4556450
gnu: r-acopula: Update to 0.9.4.
...
* gnu/packages/cran.scm (r-acopula): Update to 0.9.4.
2023-09-14 00:04:11 +02:00
aec1073ee7
gnu: r-gamlss: Update to 5.4-18.
...
* gnu/packages/cran.scm (r-gamlss): Update to 5.4-18.
2023-09-14 00:04:11 +02:00
adb7d03127
gnu: r-desolve: Update to 1.38.
...
* gnu/packages/cran.scm (r-desolve): Update to 1.38.
2023-09-14 00:04:10 +02:00
53d902a9d4
gnu: r-terra: Update to 1.7-46.
...
* gnu/packages/cran.scm (r-terra): Update to 1.7-46.
2023-09-14 00:04:10 +02:00
331045a386
gnu: r-leidenalg: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.2.
2023-09-14 00:04:10 +02:00
99f4f47c8f
gnu: r-dqrng: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-dqrng): Update to 0.3.1.
2023-09-14 00:04:10 +02:00
ae07546906
gnu: r-styler: Update to 1.10.2.
...
* gnu/packages/cran.scm (r-styler): Update to 1.10.2.
2023-09-14 00:04:10 +02:00
6b25da59a1
gnu: r-cyclocomp: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-cyclocomp): Update to 1.1.1.
2023-09-14 00:04:10 +02:00
961a3a81ca
gnu: r-ggcorrplot: Update to 0.1.4.1.
...
* gnu/packages/cran.scm (r-ggcorrplot): Update to 0.1.4.1.
2023-09-14 00:04:10 +02:00
d92372b3fa
gnu: r-yulab-utils: Update to 0.0.9.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.0.9.
2023-09-14 00:04:09 +02:00
6589c5fab6
gnu: r-bqtl: Update to 1.0-35.
...
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-35.
2023-09-14 00:04:09 +02:00
c4084fb9d5
gnu: r-rms: Update to 6.7-1.
...
* gnu/packages/cran.scm (r-rms): Update to 6.7-1.
2023-09-14 00:04:09 +02:00
d4dd9c352d
gnu: r-classint: Update to 0.4-10.
...
* gnu/packages/cran.scm (r-classint): Update to 0.4-10.
2023-09-14 00:04:09 +02:00
ebd91f1bb4
gnu: r-pbdzmq: Update to 0.3-10.
...
* gnu/packages/cran.scm (r-pbdzmq): Update to 0.3-10.
2023-09-14 00:04:09 +02:00
982487c0fe
gnu: r-minpack-lm: Update to 1.2-4.
...
* gnu/packages/cran.scm (r-minpack-lm): Update to 1.2-4.
2023-09-14 00:04:09 +02:00
7dd9d99f71
gnu: r-nnls: Update to 1.5.
...
* gnu/packages/cran.scm (r-nnls): Update to 1.5.
2023-09-14 00:04:09 +02:00
2dac269403
gnu: r-qmri: Update to 1.2.6.
...
* gnu/packages/cran.scm (r-qmri): Update to 1.2.6.
2023-09-14 00:04:09 +02:00
d9b671a96e
gnu: r-adimpro: Update to 0.9.6.
...
* gnu/packages/cran.scm (r-adimpro): Update to 0.9.6.
2023-09-14 00:04:08 +02:00
b7b579dce4
gnu: r-fmri: Update to 1.9.12.
...
* gnu/packages/cran.scm (r-fmri): Update to 1.9.12.
2023-09-14 00:04:08 +02:00
d502c65bd4
gnu: r-circular: Update to 0.5-0.
...
* gnu/packages/cran.scm (r-circular): Update to 0.5-0.
2023-09-14 00:04:08 +02:00
27be02ef17
gnu: r-credentials: Update to 2.0.1.
...
* gnu/packages/cran.scm (r-credentials): Update to 2.0.1.
2023-09-14 00:04:08 +02:00
2085788215
gnu: r-ggeffects: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-ggeffects): Update to 1.3.1.
2023-09-14 00:04:08 +02:00
b0a59e175c
gnu: r-performance: Update to 0.10.5.
...
* gnu/packages/cran.scm (r-performance): Update to 0.10.5.
2023-09-14 00:04:08 +02:00
73eec30f7c
gnu: r-targets: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-targets): Update to 1.3.0.
2023-09-14 00:04:08 +02:00
c4d627396f
gnu: r-tarchetypes: Update to 0.7.8.
...
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.8.
2023-09-14 00:04:08 +02:00
52c69229f8
gnu: r-phyclust: Update to 0.1-34.
...
* gnu/packages/cran.scm (r-phyclust): Update to 0.1-34.
2023-09-14 00:04:07 +02:00
00a4e351eb
gnu: r-flextable: Update to 0.9.3.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.9.3.
2023-09-14 00:04:07 +02:00
e371d89fa4
gnu: r-insight: Update to 0.19.4.
...
* gnu/packages/cran.scm (r-insight): Update to 0.19.4.
2023-09-14 00:04:07 +02:00
28d1e102b6
gnu: r-reticulate: Update to 1.32.0.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.32.0.
2023-09-14 00:04:07 +02:00
4d0b8b39a7
gnu: r-rio: Update to 0.5.30.
...
* gnu/packages/cran.scm (r-rio): Update to 0.5.30.
2023-09-14 00:04:07 +02:00
a8c112e212
gnu: r-statsexpressions: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-statsexpressions): Update to 1.5.2.
2023-09-14 00:04:07 +02:00
ad05f41553
gnu: r-prodlim: Update to 2023.08.28.
...
* gnu/packages/cran.scm (r-prodlim): Update to 2023.08.28.
2023-09-14 00:04:07 +02:00
96841f9b22
gnu: r-lpsolve: Update to 5.6.19.
...
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.19.
2023-09-14 00:04:06 +02:00
d530d51c39
gnu: r-lambertw: Update to 0.6.8.
...
* gnu/packages/cran.scm (r-lambertw): Update to 0.6.8.
2023-09-14 00:04:06 +02:00
273b193782
gnu: r-ctrdata: Update to 1.15.1.
...
* gnu/packages/cran.scm (r-ctrdata): Update to 1.15.1.
2023-09-14 00:04:06 +02:00
d0928fe95c
gnu: r-rcppnumerical: Update to 0.6-0.
...
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.6-0.
2023-09-14 00:04:06 +02:00
f5bc3727de
gnu: r-askpass: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-askpass): Update to 1.2.0.
2023-09-14 00:04:06 +02:00
1af29b5f27
gnu: r-mboost: Update to 2.9-8.
...
* gnu/packages/cran.scm (r-mboost): Update to 2.9-8.
2023-09-14 00:04:06 +02:00
4e2c4c5d4d
gnu: r-climaemet: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-climaemet): Update to 1.2.0.
2023-09-14 00:04:06 +02:00
34d08dc157
gnu: r-ggfittext: Update to 0.10.1.
...
* gnu/packages/cran.scm (r-ggfittext): Update to 0.10.1.
2023-09-14 00:04:06 +02:00
bf9cd9521a
gnu: r-htscluster: Update to 2.0.11.
...
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.11.
2023-09-14 00:04:05 +02:00
8f59ac151f
gnu: r-abn: Update to 3.0.0.
...
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.0.
[propagated-inputs]: Add r-mclogit and r-stringi.
2023-09-13 23:14:38 +02:00
4676f07f6d
gnu: r-glmnetutils: Update to 1.1.9.
...
* gnu/packages/cran.scm (r-glmnetutils): Update to 1.1.9.
2023-09-13 23:02:37 +02:00
b3b369f990
gnu: r-hmisc: Update to 5.1-1.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-1.
2023-09-13 22:58:18 +02:00
ab1f8495f9
gnu: r-rstan: Update to 2.26.23.
...
* gnu/packages/cran.scm (r-rstan): Update to 2.26.23.
[native-inputs]: Remove pandoc.
[propagated-inputs]: Add r-quickjsr.
2023-09-13 22:57:03 +02:00
455dadc41a
gnu: r-iheatmapr: Update to 0.7.0.
...
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.0.
[source]: Delete minified plotly JavaScript.
[native-inputs]: Add esbuild and js-plotly.
[arguments]: Add phase to minify plotly.js.
2023-09-13 22:51:14 +02:00
f2d690c6c5
gnu: r-leaflet: Update to 2.2.0.
...
* gnu/packages/cran.scm (r-leaflet): Update to 2.2.0.
[source]: Do not delete jquery.min.js, because it is no longer included.
[arguments]: Adjust minification accordingly.
[native-inputs]: Remove js-jquery.
[propagated-inputs]: Remove r-base64enc and r-markdown; add r-jquerylib and
r-xfun.
2023-09-13 22:41:25 +02:00
9049506d8b
gnu: python-hicmatrix: Remove custom 'check phase.
...
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Remove custom
'check phase.
2023-09-13 22:19:23 +02:00
bf98283741
gnu: r-radiant-data: Update to 1.6.1.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.1.
[propagated-inputs]: Add r-arrow.
2023-09-13 22:18:27 +02:00
080d088016
gnu: r-arrow: Update to 13.0.0.
...
* gnu/packages/cran.scm (r-arrow): Update to 13.0.0.
2023-09-13 22:18:27 +02:00
6739c534f8
gnu: apache-arrow: Update to 13.0.0.
...
* gnu/packages/databases.scm (apache-arrow): Update to 13.0.0.
2023-09-13 22:18:27 +02:00
aaaaa2ea07
gnu: r-minqa: Update to 1.2.6.
...
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.6.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2023-09-13 22:18:27 +02:00
4e8ec5a16b
gnu: r-dt: Update to 0.29.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.29.
[propagated-inputs]: Add r-httpuv.
2023-09-13 22:18:27 +02:00
2c1d86e2e0
gnu: python-hicmatrix: Remove syntax error in setup.py.
...
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Add phase
remove-invalid-syntax.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13 22:17:21 +02:00
dc172966ba
gnu: Add r-quickjsr.
...
* gnu/packages/cran.scm (r-quickjsr): New variable.
2023-09-13 22:17:21 +02:00
67268d9a81
gnu: octave-cli: Update to 8.3.0
...
* gnu/packages/maths.scm (octave-cli): Update to 8.3.0
Signed-off-by: Eric Bavier <bavier@posteo.net>
2023-09-13 09:22:28 -05:00
4f933f977d
gnu: nyxt: Update to 3.7.0.
...
* gnu/packages/web-browsers.scm (nyxt): Update to 3.7.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13 13:38:18 +02:00
828b08d585
gnu: cl-nasdf: Update to 0.1.8.
...
* gnu/packages/lisp-xyz.scm (sbcl-nasdf): Update to 0.1.8.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13 13:37:15 +02:00
3007f77596
gnu: cl-njson: Update to 1.2.0.
...
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.2.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13 13:32:42 +02:00
cda20190bc
gnu: Add r-interactivedisplay.
...
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13 12:10:06 +02:00
6a01c1142b
gnu: hdf4, hdf4-alt: Update to 4.2.16-2.
...
* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches
that do not apply any more.
[arguments]: Drop configure flag related to libtirpc. Add configure flag
to build xdr library and drop unneeded substitutions.
* gnu/packages/patches/hdf4-architectures.patch,
gnu/packages/patches/hdf4-tirpc.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Unregister patches.
2023-09-13 11:18:42 +02:00
c30c9df5e9
gnu: yoyo-migrations: Update to 8.2.0.
...
* gnu/packages/databases.scm (yoyo-migrations): Update to 8.2.0.
[propagated-inputs]: Add python-importlib-metadata.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:21 +01:00
79988ab742
gnu: libvterm: Update arguments style.
...
* gnu/packages/terminals.scm (libvterm)[arguments]: Update arguments style.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:20 +01:00
8d5304b143
gnu: libvterm: Update to 0.3.3.
...
* gnu/packages/terminals.scm (libvterm): Update to 0.3.3.
[source]: Use launchpad.net url.
[arguments]: Use CC-FOR-TARGET.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:20 +01:00
901eaca92b
gnu: tennix: Update to 1.3.4.
...
* gnu/packages/games.scm (tennix): Update to 1.3.4.
[arguments]<#:phases>: Update style and remove fix-include phase.
[inputs]: Remove labels, update to SDL2, add SDL2_gfx dependency.
[license]: Remove LGPL license, as SDL_rotozoom is no longer included.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:20 +01:00
7f150a1895
gnu: python-qtsass: Update to 0.4.0.
...
This also fixes test failures preventing the package from building.
* gnu/packages/python-xyz.scm (python-qtsass): Update to 0.4.0, fix build.
[native-inputs]: Add python-flaky.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:20 +01:00
de2ee9cae6
gnu: python-libsass: Update to 0.22.0.
...
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.22.0.
[phases]: Add new phase 'silent-failing-tests and disable 2 failing
tests to complete build.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:20 +01:00
10bc07671e
gnu: emilua: Update to 0.4.3.
...
* gnu/packages/lua.scm (emilua): Update to 0.4.3.
[source]: Remove recursive? and replace with inputs.
[arguments]: Update style, add patch phase, enable tests and enable some more
features.
[native-inputs]: Add gperf, gawk and xdd.
[inputs]: Add emilua-http and trial-protocol as origin is no longer recursive,
also add serd, sord, libcap and liburing.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13 09:22:14 +01:00
07d43c66d5
gnu: Add swineherd.
...
* gnu/packages/admin.scm (swineherd): New variable.
2023-09-12 23:30:58 +02:00
4cb2e08b8e
gnu: python-django-4.0: Use $TZDIR.
...
* gnu/packages/django.scm (python-django-4.0) [native-search-paths]: Use
$TZDIR.
2023-09-12 10:05:00 -04:00
076b3384df
gnu: qemu: Reinstate the iothreads-commit-active test.
...
* gnu/packages/virtualization.scm (qemu) [arguments]: Add set-SOCK_DIR phase.
(qemu-minimal) [arguments]: Delete the disable-extra-tests phase.
2023-09-12 09:59:47 -04:00
9996896dc2
gnu: Add python-peaks2utr.
...
* gnu/packages/bioinformatics.scm (python-peaks2utr): New variable.
2023-09-12 12:28:32 +02:00
30ec6f2fb5
gnu: macs: Update to 2.2.9.1.
...
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.9.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Move python-cython from here...
[inputs]: ...and python-numpy from here...
[propagated-inputs]: ...to here.
2023-09-12 12:28:32 +02:00
Andy Tai
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Zheng Junjie
Artyom V. Poptsov
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Lars Bilke
Skyler
fanquake
Timotej Lazar
Ramin Honary
Kjartan Oli Agustsson
c4droid
Ricardo Wurmus
Efraim Flashner
Julien Lepiller
Mădălin Ionel Patrașcu
Andre A. Gomes
Artyom Bologov
Navid Afkhami
Andreas Enge
Munyoki Kilyungi
Sharlatan Hellseher
Valter Nazianzeno
Maxim Cournoyer